Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:18:09 (716555): wrapper (7.7.26015): starting
00:18:09 (716555): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 00:18:09] Arguments: --nthreads 8
[2025-11-19 00:18:09] Threads: 8
[2025-11-19 00:18:09] Checking for CVMFS
[2025-11-19 00:18:09] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:18:09] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:18:09] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:18:09] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:18:09] 2.11.3.0 1855 84390 245068 153035 2 382 43613561 45568001 5576 130560 0 555259149 99.856 243523168 19830 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-19 00:18:09] CVMFS is ok
[2025-11-19 00:18:09] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:18:09] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:18:09] Further information can be found at the LHC@home message board.
[2025-11-19 00:18:09] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:18:09] Checking for apptainer binary...
[2025-11-19 00:18:09] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:18:09] Running /usr/bin/apptainer --version
[2025-11-19 00:18:09] apptainer version 1.4.1-1.el9
[2025-11-19 00:18:09] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:18:09] wns0009.triumf.lcg
[2025-11-19 00:18:09] apptainer works
[2025-11-19 00:18:09] Set ATHENA_PROC_NUMBER=8
[2025-11-19 00:18:09] Set ATHENA_CORE_NUMBER=8
[2025-11-19 00:18:09] Starting ATLAS job with PandaID=6892526196
[2025-11-19 00:18:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 00:22:25]  *** The last 200 lines of the pilot log: ***
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . Timing measurements:
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . get job = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . initial setup = 2 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . payload setup = 5 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . stage-in = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . payload execution = 54 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . stage-out = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . log creation = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | ..............................
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892526196/pilotlog.txt
[2025-11-19 00:22:25] 2025-11-19 08:21:38,155 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 00:22:25] - Log from pilotlog.txt -
[2025-11-19 00:22:25] 2025-11-19 08:21:38,140 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892526196/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,141 | INFO     | extracted standard info from prmon json
[2025-11-19 00:22:25] 2025-11-19 08:21:38,141 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 00:22:25] 2025-11-19 08:21:38,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 00:22:25] 2025-11-19 08:21:38,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 00:22:25] 2025-11-19 08:21:38,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 00:22:25] 2025-11-19 08:21:38,143 | WARNING  | wrong length of table data, x=[1763540323.0], y=[1188.0] (must be same and length>=4)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | ..............................
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . Timing measurements:
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . get job = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . initial setup = 2 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . payload setup = 5 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . stage-in = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . payload execution = 54 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . stage-out = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . log creation = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | ..............................
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892526196/pilotlog.txt
[2025-11-19 00:22:25] 2025-11-19 08:21:38,155 | WARNING  | 
[2025-11-19 00:22:25] [begin log extracts]
[2025-11-19 00:22:25] - Log from pilotlog.txt -
[2025-11-19 00:22:25] 2025-11-19 08:21:38,140 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892526196/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,141 | INFO     | extracted standard info from prmon json
[2025-11-19 00:22:25] 2025-11-19 08:21:38,141 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 00:22:25] 2025-11-19 08:21:38,141 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 00:22:25] 2025-11-19 08:21:38,142 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 00:22:25] 2025-11-19 08:21:38,142 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 00:22:25] 2025-11-19 08:21:38,143 | WARNING  | wrong length of table data, x=[1763540323.0], y=[1188.0] (must be same and length>=4)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | ..............................
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . Timing measurements:
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . get job = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . initial setup = 2 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . payload setup = 5 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . stage-in = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . payload execution = 54 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . stage-out = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,144 | INFO     | . log creation = 0 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | ..............................
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 00:22:25] 2025-11-19 08:21:38,145 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892526196/pilotlog.txt
[2025-11-19 00:22:25] [end log extracts]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,156 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,156 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 00:22:25] 2025-11-19 08:21:38,233 | INFO     | 
[2025-11-19 00:22:25] 2025-11-19 08:21:38,233 | INFO     | job summary report
[2025-11-19 00:22:25] 2025-11-19 08:21:38,233 | INFO     | --------------------------------------------------
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | PanDA job id: 6892526196
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | task id: 47493029
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 00:19:28,984 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | pilot state: failed 
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | transexitcode: 65
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | exeerrorcode: 65
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | exitcode: 65
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | cpuconsumptiontime: 46 s
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | nevents: 0
[2025-11-19 00:22:25] 2025-11-19 08:21:38,234 | INFO     | neventsw: 0
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | pid: 726750
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | pgrp: 726750
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | corecount: 8
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | event service: False
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | sizes: {0: 2297193, 4: 2297455, 11: 2297483, 63: 2322969, 65: 2327287, 185: 2327425}
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | --------------------------------------------------
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | 
[2025-11-19 00:22:25] 2025-11-19 08:21:38,235 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,249 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 00:22:25] 2025-11-19 08:21:38,250 | INFO     | job 6892526196 has completed (purged errors)
[2025-11-19 00:22:25] 2025-11-19 08:21:38,251 | INFO     | overall cleanup function is called
[2025-11-19 00:22:25] 2025-11-19 08:21:38,733 | INFO     | PID=720212 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 00:22:25] 2025-11-19 08:21:38,733 | INFO     | .. there are 12 such processes running
[2025-11-19 00:22:25] 2025-11-19 08:21:39,258 | INFO     | --- collectZombieJob: --- 10, [726750]
[2025-11-19 00:22:25] 2025-11-19 08:21:39,258 | INFO     | zombie collector waiting for pid 726750
[2025-11-19 00:22:25] 2025-11-19 08:21:39,258 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 00:22:25] 2025-11-19 08:21:39,259 | INFO     | collected zombie processes
[2025-11-19 00:22:25] 2025-11-19 08:21:39,259 | INFO     | will attempt to kill all subprocesses of pid=726750
[2025-11-19 00:22:25] 2025-11-19 08:21:39,415 | INFO     | process IDs to be killed: [726750] (in reverse order)
[2025-11-19 00:22:25] 2025-11-19 08:21:39,464 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 00:22:25] 2025-11-19 08:21:39,464 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 00:22:25] 2025-11-19 08:21:39,469 | INFO     | did not find any defunct processes belonging to 726750
[2025-11-19 00:22:25] 2025-11-19 08:21:39,473 | INFO     | did not find any defunct processes belonging to 726750
[2025-11-19 00:22:25] 2025-11-19 08:21:39,474 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 00:22:25] 2025-11-19 08:21:39,474 | INFO     | ready for new job
[2025-11-19 00:22:25] 2025-11-19 08:21:39,474 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 00:22:25] 2025-11-19 08:21:39,475 | INFO     | ***************************************
[2025-11-19 00:22:25] 2025-11-19 08:21:39,475 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 00:22:25] 2025-11-19 08:21:39,475 | INFO     | ***************************************
[2025-11-19 00:22:25] 2025-11-19 08:21:39,475 | INFO     | 
[2025-11-19 00:22:25] 2025-11-19 08:21:39,477 | INFO     | architecture information:
[2025-11-19 00:22:25] 2025-11-19 08:21:39,477 | INFO     | executing command: cat /etc/os-release
[2025-11-19 00:22:25] 2025-11-19 08:21:39,486 | INFO     | cat /etc/os-release:
[2025-11-19 00:22:25] NAME="CentOS Linux"
[2025-11-19 00:22:25] VERSION="7 (Core)"
[2025-11-19 00:22:25] ID="centos"
[2025-11-19 00:22:25] ID_LIKE="rhel fedora"
[2025-11-19 00:22:25] VERSION_ID="7"
[2025-11-19 00:22:25] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 00:22:25] ANSI_COLOR="0;31"
[2025-11-19 00:22:25] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 00:22:25] HOME_URL="https://www.centos.org/"
[2025-11-19 00:22:25] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 00:22:25] 
[2025-11-19 00:22:25] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 00:22:25] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 00:22:25] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 00:22:25] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 00:22:25] 
[2025-11-19 00:22:25] 2025-11-19 08:21:39,486 | INFO     | ***************************************
[2025-11-19 00:22:25] 2025-11-19 08:21:39,989 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-19 00:22:25] 2025-11-19 08:21:40,000 | INFO     | sufficient remaining disk space (1406206476288 B)
[2025-11-19 00:22:25] 2025-11-19 08:21:40,000 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 00:22:25] 2025-11-19 08:21:40,000 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 00:22:25] 2025-11-19 08:21:40,001 | INFO     | update_server=False
[2025-11-19 00:22:25] 2025-11-19 08:21:40,001 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 00:22:25] 2025-11-19 08:21:40,001 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 00:22:25] 2025-11-19 08:21:40,223 | INFO     | all payload control threads have been joined
[2025-11-19 00:22:25] 2025-11-19 08:21:40,462 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 00:22:25] 2025-11-19 08:21:40,462 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 00:22:25] 2025-11-19 08:21:40,462 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 00:22:25] 2025-11-19 08:21:40,463 | INFO     | will abort loop
[2025-11-19 00:22:25] 2025-11-19 08:21:40,515 | INFO     | all data control threads have been joined
[2025-11-19 00:22:25] 2025-11-19 08:21:40,887 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 00:22:25] 2025-11-19 08:21:40,903 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 00:22:25] 2025-11-19 08:21:41,005 | INFO     | [job] retrieve thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,007 | INFO     | [job] queue monitor thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,096 | INFO     | [data] copytool_in thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,232 | INFO     | [payload] control thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,343 | INFO     | [payload] validate_post thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,381 | INFO     | [job] validate thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,467 | INFO     | [job] job monitor thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,521 | INFO     | [data] control thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,561 | INFO     | all job control threads have been joined
[2025-11-19 00:22:25] 2025-11-19 08:21:41,574 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,648 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:41,729 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:42,092 | INFO     | [payload] failed_post thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:42,449 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:42,565 | INFO     | [job] control thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:42,894 | INFO     | [data] copytool_out thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:21:44,908 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 00:22:25] 2025-11-19 08:22:11,032 | INFO     | PID=720212 has CPU usage=1.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 00:22:25] 2025-11-19 08:22:11,032 | INFO     | .. there are 12 such processes running
[2025-11-19 00:22:25] 2025-11-19 08:22:11,033 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 00:22:25] 2025-11-19 08:22:11,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 00:22:25] 2025-11-19 08:22:11,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 00:22:25] 2025-11-19 08:22:18,720 | INFO     | [monitor] cgroup control has ended
[2025-11-19 00:22:25] 2025-11-19 08:22:20,518 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140653574752064)>', '<ExcThread(monitor, started 140653040224000)>']
[2025-11-19 00:22:25] 2025-11-19 08:22:21,083 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 00:22:25] 2025-11-19 08:22:21,083 | INFO     | [monitor] control thread has ended
[2025-11-19 00:22:25] 2025-11-19 08:22:25,543 | INFO     | all workflow threads have been joined
[2025-11-19 00:22:25] 2025-11-19 08:22:25,543 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 00:22:25] 2025-11-19 08:22:25,544 | INFO     | traces error code: 0
[2025-11-19 00:22:25] 2025-11-19 08:22:25,544 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 00:22:25] 2025-11-19 08:22:25,656 [wrapper] ==== pilot stdout END ====
[2025-11-19 00:22:25] 2025-11-19 08:22:25,658 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 00:22:25] 2025-11-19 08:22:25,660 [wrapper] pilotpid: 720212
[2025-11-19 00:22:25] 2025-11-19 08:22:25,661 [wrapper] Pilot exit status: 0
[2025-11-19 00:22:25] 2025-11-19 08:22:25,672 [wrapper] pandaids: 6892526196
[2025-11-19 00:22:25] 2025-11-19 08:22:25,702 [wrapper] cleanup supervisor_pilot  720218 720213
[2025-11-19 00:22:25] 2025-11-19 08:22:25,704 [wrapper] Test setup, not cleaning
[2025-11-19 00:22:25] 2025-11-19 08:22:25,706 [wrapper] apfmon messages muted
[2025-11-19 00:22:25] 2025-11-19 08:22:25,709 [wrapper] ==== wrapper stdout END ====
[2025-11-19 00:22:25] 2025-11-19 08:22:25,711 [wrapper] ==== wrapper stderr END ====
[2025-11-19 00:22:25]  *** Error codes and diagnostics ***
[2025-11-19 00:22:25]     "exeErrorCode": 65,
[2025-11-19 00:22:25]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-19 00:22:25]     "pilotErrorCode": 1305,
[2025-11-19 00:22:25]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-19 00:22:25]  *** Listing of results directory ***
[2025-11-19 00:22:25] total 405268
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc    576529 Nov 18 23:00 pilot3.tar.gz
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc      5112 Nov 18 23:09 queuedata.json
[2025-11-19 00:22:25] -rwx------. 1 boinc boinc     36292 Nov 18 23:09 runpilot2-wrapper.sh
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc       100 Nov 19 00:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 00:22:25] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 00:18 run_atlas
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc       105 Nov 19 00:18 job.xml
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc      6444 Nov 19 00:18 init_data.xml
[2025-11-19 00:22:25] -rw-r--r--. 2 boinc boinc 410789275 Nov 19 00:18 EVNT.47493027._000099.pool.root.1
[2025-11-19 00:22:25] -rw-r--r--. 2 boinc boinc     15120 Nov 19 00:18 start_atlas.sh
[2025-11-19 00:22:25] drwxrwx--x. 2 boinc boinc      4096 Nov 19 00:18 shared
[2025-11-19 00:22:25] -rw-r--r--. 2 boinc boinc    590099 Nov 19 00:18 input.tar.gz
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc         0 Nov 19 00:18 boinc_lockfile
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc      2771 Nov 19 00:18 pandaJob.out
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc    992806 Nov 19 00:18 agis_schedconf.cvmfs.json
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc   1525063 Nov 19 00:18 agis_ddmendpoints.agis.ALL.json
[2025-11-19 00:22:25] drwx------. 5 boinc boinc      4096 Nov 19 00:18 pilot3
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc       523 Nov 19 00:19 boinc_task_state.xml
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc       964 Nov 19 00:19 memory_monitor_summary.json
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc     48410 Nov 19 00:19 log.47493029._000945.job.log.tgz.1
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc        95 Nov 19 00:21 pilot_heartbeat.json
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc     10316 Nov 19 00:21 heartbeat.json
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc      8192 Nov 19 00:22 boinc_mmap_file
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc        23 Nov 19 00:22 wrapper_checkpoint.txt
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc      5008 Nov 19 00:22 pilotlog.txt
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc     93547 Nov 19 00:22 log.47493029._000945.job.log.1
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc       186 Nov 19 00:22 output.list
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc       620 Nov 19 00:22 runtime_log
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc    163840 Nov 19 00:22 result.tar.gz
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc      8526 Nov 19 00:22 runtime_log.err
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc       644 Nov 19 00:22 My3KDm4Urf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm5tFKDmphrQbm.diag
[2025-11-19 00:22:25] -rw-r--r--. 1 boinc boinc     22446 Nov 19 00:22 stderr.txt
[2025-11-19 00:22:25] No HITS result produced
[2025-11-19 00:22:25]  *** Contents of shared directory: ***
[2025-11-19 00:22:25] total 401924
[2025-11-19 00:22:25] -rw-r--r--. 2 boinc boinc 410789275 Nov 19 00:18 ATLAS.root_0
[2025-11-19 00:22:25] -rw-r--r--. 2 boinc boinc     15120 Nov 19 00:18 start_atlas.sh
[2025-11-19 00:22:25] -rw-r--r--. 2 boinc boinc    590099 Nov 19 00:18 input.tar.gz
[2025-11-19 00:22:25] -rw-------. 1 boinc boinc    163840 Nov 19 00:22 result.tar.gz
00:22:27 (716555): run_atlas exited; CPU time 46.115531
00:22:27 (716555): called boinc_finish(0)

</stderr_txt>
]]>

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