Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:55:53 (3116261): wrapper (7.7.26015): starting
00:55:53 (3116261): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 00:55:53] Arguments: --nthreads 12
[2025-11-19 00:55:53] Threads: 12
[2025-11-19 00:55:53] Checking for CVMFS
[2025-11-19 00:55:53] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:55:53] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:55:53] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:55:53] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:55:53] 2.11.5.0 2129 86684 208476 153036 0 311 40337203 45568001 9518 130560 0 853413805 99.844 418714902 21193 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.163:3129 1
[2025-11-19 00:55:53] CVMFS is ok
[2025-11-19 00:55:53] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:55:53] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:55:53] Further information can be found at the LHC@home message board.
[2025-11-19 00:55:53] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:55:53] Checking for apptainer binary...
[2025-11-19 00:55:53] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:55:53] Running /usr/bin/apptainer --version
[2025-11-19 00:55:53] apptainer version 1.4.1-1.el9
[2025-11-19 00:55:53] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:55:53] wns0037.triumf.lcg
[2025-11-19 00:55:53] apptainer works
[2025-11-19 00:55:53] Set ATHENA_PROC_NUMBER=12
[2025-11-19 00:55:53] Set ATHENA_CORE_NUMBER=12
[2025-11-19 00:55:53] Starting ATLAS job with PandaID=6892524057
[2025-11-19 00:55:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 01:00:08]  *** The last 200 lines of the pilot log: ***
[2025-11-19 01:00:08] 2025-11-19 08:59:12,528 | WARNING  | wrong length of table data, x=[1763542585.0], y=[1542.0] (must be same and length>=4)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | could have reported an average CPU frequency of 2632 MHz (4 samples)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | ..............................
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . Timing measurements:
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . get job = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . initial setup = 2 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . payload setup = 4 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . stage-in = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . payload execution = 46 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . stage-out = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . log creation = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | ..............................
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892524057/pilotlog.txt
[2025-11-19 01:00:08] 2025-11-19 08:59:12,541 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 01:00:08] - Log from pilotlog.txt -
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892524057/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | INFO     | extracted standard info from prmon json
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 01:00:08] 2025-11-19 08:59:12,528 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 01:00:08] 2025-11-19 08:59:12,528 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 01:00:08] 2025-11-19 08:59:12,528 | WARNING  | wrong length of table data, x=[1763542585.0], y=[1542.0] (must be same and length>=4)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | could have reported an average CPU frequency of 2632 MHz (4 samples)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | ..............................
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . Timing measurements:
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . get job = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . initial setup = 2 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . payload setup = 4 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . stage-in = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . payload execution = 46 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . stage-out = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . log creation = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | ..............................
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892524057/pilotlog.txt
[2025-11-19 01:00:08] 2025-11-19 08:59:12,541 | WARNING  | 
[2025-11-19 01:00:08] [begin log extracts]
[2025-11-19 01:00:08] - Log from pilotlog.txt -
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892524057/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | INFO     | extracted standard info from prmon json
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 01:00:08] 2025-11-19 08:59:12,527 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 01:00:08] 2025-11-19 08:59:12,528 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 01:00:08] 2025-11-19 08:59:12,528 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 01:00:08] 2025-11-19 08:59:12,528 | WARNING  | wrong length of table data, x=[1763542585.0], y=[1542.0] (must be same and length>=4)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | could have reported an average CPU frequency of 2632 MHz (4 samples)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | ..............................
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . Timing measurements:
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . get job = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . initial setup = 2 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,529 | INFO     | . payload setup = 4 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . stage-in = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . payload execution = 46 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . stage-out = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | . log creation = 0 s
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | ..............................
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 01:00:08] 2025-11-19 08:59:12,530 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892524057/pilotlog.txt
[2025-11-19 01:00:08] [end log extracts]
[2025-11-19 01:00:08] 2025-11-19 08:59:12,541 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 01:00:08] 2025-11-19 08:59:12,542 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 01:00:08] 2025-11-19 08:59:12,756 | INFO     | time since job start (190s) is within the limit (172800.0s)
[2025-11-19 01:00:08] 2025-11-19 08:59:13,010 | INFO     | 
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | job summary report
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | --------------------------------------------------
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | PanDA job id: 6892524057
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | task id: 47493029
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 00:57:04,054 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | pilot state: failed 
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | transexitcode: 65
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | exeerrorcode: 65
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | exitcode: 65
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | cpuconsumptiontime: 40 s
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | nevents: 0
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | neventsw: 0
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | pid: 3126520
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | pgrp: 3126520
[2025-11-19 01:00:08] 2025-11-19 08:59:13,011 | INFO     | corecount: 12
[2025-11-19 01:00:08] 2025-11-19 08:59:13,012 | INFO     | event service: False
[2025-11-19 01:00:08] 2025-11-19 08:59:13,012 | INFO     | sizes: {0: 2297193, 1: 2297193, 4: 2297483, 11: 2297511, 54: 2322943, 55: 2327389, 176: 2327587}
[2025-11-19 01:00:08] 2025-11-19 08:59:13,012 | INFO     | --------------------------------------------------
[2025-11-19 01:00:08] 2025-11-19 08:59:13,012 | INFO     | 
[2025-11-19 01:00:08] 2025-11-19 08:59:13,012 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,029 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | job 6892524057 has completed (purged errors)
[2025-11-19 01:00:08] 2025-11-19 08:59:13,030 | INFO     | overall cleanup function is called
[2025-11-19 01:00:08] 2025-11-19 08:59:14,037 | INFO     | --- collectZombieJob: --- 10, [3126520]
[2025-11-19 01:00:08] 2025-11-19 08:59:14,037 | INFO     | zombie collector waiting for pid 3126520
[2025-11-19 01:00:08] 2025-11-19 08:59:14,037 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 01:00:08] 2025-11-19 08:59:14,037 | INFO     | collected zombie processes
[2025-11-19 01:00:08] 2025-11-19 08:59:14,037 | INFO     | will attempt to kill all subprocesses of pid=3126520
[2025-11-19 01:00:08] 2025-11-19 08:59:14,192 | INFO     | process IDs to be killed: [3126520] (in reverse order)
[2025-11-19 01:00:08] 2025-11-19 08:59:14,255 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 01:00:08] 2025-11-19 08:59:14,256 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 01:00:08] 2025-11-19 08:59:14,263 | INFO     | did not find any defunct processes belonging to 3126520
[2025-11-19 01:00:08] 2025-11-19 08:59:14,269 | INFO     | did not find any defunct processes belonging to 3126520
[2025-11-19 01:00:08] 2025-11-19 08:59:14,270 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 01:00:08] 2025-11-19 08:59:14,270 | INFO     | ready for new job
[2025-11-19 01:00:08] 2025-11-19 08:59:14,270 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 01:00:08] 2025-11-19 08:59:14,272 | INFO     | ***************************************
[2025-11-19 01:00:08] 2025-11-19 08:59:14,272 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 01:00:08] 2025-11-19 08:59:14,272 | INFO     | ***************************************
[2025-11-19 01:00:08] 2025-11-19 08:59:14,272 | INFO     | 
[2025-11-19 01:00:08] 2025-11-19 08:59:14,274 | INFO     | architecture information:
[2025-11-19 01:00:08] 2025-11-19 08:59:14,274 | INFO     | executing command: cat /etc/os-release
[2025-11-19 01:00:08] 2025-11-19 08:59:14,286 | INFO     | cat /etc/os-release:
[2025-11-19 01:00:08] NAME="CentOS Linux"
[2025-11-19 01:00:08] VERSION="7 (Core)"
[2025-11-19 01:00:08] ID="centos"
[2025-11-19 01:00:08] ID_LIKE="rhel fedora"
[2025-11-19 01:00:08] VERSION_ID="7"
[2025-11-19 01:00:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 01:00:08] ANSI_COLOR="0;31"
[2025-11-19 01:00:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 01:00:08] HOME_URL="https://www.centos.org/"
[2025-11-19 01:00:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 01:00:08] 
[2025-11-19 01:00:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 01:00:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 01:00:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 01:00:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 01:00:08] 
[2025-11-19 01:00:08] 2025-11-19 08:59:14,287 | INFO     | ***************************************
[2025-11-19 01:00:08] 2025-11-19 08:59:14,789 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-19 01:00:08] 2025-11-19 08:59:14,801 | INFO     | sufficient remaining disk space (2157044563968 B)
[2025-11-19 01:00:08] 2025-11-19 08:59:14,801 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 01:00:08] 2025-11-19 08:59:14,801 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 01:00:08] 2025-11-19 08:59:14,801 | INFO     | update_server=False
[2025-11-19 01:00:08] 2025-11-19 08:59:14,801 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 01:00:08] 2025-11-19 08:59:14,801 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 01:00:08] 2025-11-19 08:59:14,802 | INFO     | aborting loop
[2025-11-19 01:00:08] 2025-11-19 08:59:14,838 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 01:00:08] 2025-11-19 08:59:14,843 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 01:00:08] 2025-11-19 08:59:14,893 | INFO     | all data control threads have been joined
[2025-11-19 01:00:08] 2025-11-19 08:59:15,806 | INFO     | [job] retrieve thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:15,808 | INFO     | [job] job monitor thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:15,826 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:15,876 | INFO     | [payload] failed_post thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:15,883 | INFO     | all payload control threads have been joined
[2025-11-19 01:00:08] 2025-11-19 08:59:15,898 | INFO     | [data] control thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:15,997 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:16,215 | INFO     | all job control threads have been joined
[2025-11-19 01:00:08] 2025-11-19 08:59:16,373 | INFO     | [data] copytool_in thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:16,553 | INFO     | [payload] validate_post thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:16,843 | INFO     | [data] copytool_out thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:16,888 | INFO     | [payload] control thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:17,088 | INFO     | [job] validate thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:17,090 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:17,216 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:17,220 | INFO     | [job] control thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:17,611 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 01:00:08] 2025-11-19 08:59:18,616 | INFO     | [job] queue monitor thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:18,848 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 01:00:08] 2025-11-19 08:59:46,035 | INFO     | PID=3119955 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 01:00:08] 2025-11-19 08:59:46,036 | INFO     | .. there are 21 such processes running
[2025-11-19 01:00:08] 2025-11-19 08:59:46,036 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 01:00:08] 2025-11-19 08:59:46,036 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 01:00:08] 2025-11-19 08:59:46,036 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 01:00:08] 2025-11-19 09:00:01,997 | INFO     | [monitor] cgroup control has ended
[2025-11-19 01:00:08] 2025-11-19 09:00:02,755 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140642000897856)>', '<ExcThread(monitor, started 140641170347776)>']
[2025-11-19 01:00:08] 2025-11-19 09:00:03,121 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 01:00:08] 2025-11-19 09:00:03,121 | INFO     | [monitor] control thread has ended
[2025-11-19 01:00:08] 2025-11-19 09:00:07,780 | INFO     | all workflow threads have been joined
[2025-11-19 01:00:08] 2025-11-19 09:00:07,780 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 01:00:08] 2025-11-19 09:00:07,780 | INFO     | traces error code: 0
[2025-11-19 01:00:08] 2025-11-19 09:00:07,780 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 01:00:08] 2025-11-19 09:00:07,907 [wrapper] ==== pilot stdout END ====
[2025-11-19 01:00:08] 2025-11-19 09:00:07,908 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 01:00:08] 2025-11-19 09:00:07,910 [wrapper] pilotpid: 3119955
[2025-11-19 01:00:08] 2025-11-19 09:00:07,912 [wrapper] Pilot exit status: 0
[2025-11-19 01:00:08] 2025-11-19 09:00:07,919 [wrapper] pandaids: 6892524057
[2025-11-19 01:00:08] 2025-11-19 09:00:07,959 [wrapper] cleanup supervisor_pilot 3119961 3119956
[2025-11-19 01:00:08] 2025-11-19 09:00:07,963 [wrapper] Test setup, not cleaning
[2025-11-19 01:00:08] 2025-11-19 09:00:07,965 [wrapper] apfmon messages muted
[2025-11-19 01:00:08] 2025-11-19 09:00:07,967 [wrapper] ==== wrapper stdout END ====
[2025-11-19 01:00:08] 2025-11-19 09:00:07,969 [wrapper] ==== wrapper stderr END ====
[2025-11-19 01:00:08]  *** Error codes and diagnostics ***
[2025-11-19 01:00:08]     "exeErrorCode": 65,
[2025-11-19 01:00:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-19 01:00:08]     "pilotErrorCode": 1305,
[2025-11-19 01:00:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-19 01:00:08]  *** Listing of results directory ***
[2025-11-19 01:00:08] total 404120
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc    576529 Nov 18 23:00 pilot3.tar.gz
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc      5112 Nov 18 23:07 queuedata.json
[2025-11-19 01:00:08] -rwx------. 1 boinc boinc     36292 Nov 18 23:08 runpilot2-wrapper.sh
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc       100 Nov 19 00:55 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 01:00:08] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 00:55 run_atlas
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc       105 Nov 19 00:55 job.xml
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc      6595 Nov 19 00:55 init_data.xml
[2025-11-19 01:00:08] -rw-r--r--. 2 boinc boinc 409616547 Nov 19 00:55 EVNT.47493027._000086.pool.root.1
[2025-11-19 01:00:08] -rw-r--r--. 2 boinc boinc     15120 Nov 19 00:55 start_atlas.sh
[2025-11-19 01:00:08] drwxrwx--x. 2 boinc boinc      4096 Nov 19 00:55 shared
[2025-11-19 01:00:08] -rw-r--r--. 2 boinc boinc    590097 Nov 19 00:55 input.tar.gz
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc         0 Nov 19 00:55 boinc_lockfile
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc      2771 Nov 19 00:55 pandaJob.out
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc    989279 Nov 19 00:55 agis_schedconf.cvmfs.json
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc   1525063 Nov 19 00:56 agis_ddmendpoints.agis.ALL.json
[2025-11-19 01:00:08] drwx------. 5 boinc boinc      4096 Nov 19 00:56 pilot3
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc       523 Nov 19 00:57 boinc_task_state.xml
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc       987 Nov 19 00:57 memory_monitor_summary.json
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc     48205 Nov 19 00:57 log.47493029._000817.job.log.tgz.1
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc        95 Nov 19 00:59 pilot_heartbeat.json
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc     10316 Nov 19 00:59 heartbeat.json
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc      8192 Nov 19 01:00 boinc_mmap_file
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc        23 Nov 19 01:00 wrapper_checkpoint.txt
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc      4823 Nov 19 01:00 pilotlog.txt
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc     92371 Nov 19 01:00 log.47493029._000817.job.log.1
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc       186 Nov 19 01:00 output.list
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc       620 Nov 19 01:00 runtime_log
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc    163840 Nov 19 01:00 result.tar.gz
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc      8528 Nov 19 01:00 runtime_log.err
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc       644 Nov 19 01:00 7JHNDmJUrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmttFKDm8cPgfm.diag
[2025-11-19 01:00:08] -rw-r--r--. 1 boinc boinc     22407 Nov 19 01:00 stderr.txt
[2025-11-19 01:00:08] No HITS result produced
[2025-11-19 01:00:08]  *** Contents of shared directory: ***
[2025-11-19 01:00:08] total 400780
[2025-11-19 01:00:08] -rw-r--r--. 2 boinc boinc 409616547 Nov 19 00:55 ATLAS.root_0
[2025-11-19 01:00:08] -rw-r--r--. 2 boinc boinc     15120 Nov 19 00:55 start_atlas.sh
[2025-11-19 01:00:08] -rw-r--r--. 2 boinc boinc    590097 Nov 19 00:55 input.tar.gz
[2025-11-19 01:00:08] -rw-------. 1 boinc boinc    163840 Nov 19 01:00 result.tar.gz
01:00:09 (3116261): run_atlas exited; CPU time 38.590814
01:00:09 (3116261): called boinc_finish(0)

</stderr_txt>
]]>

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