Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
00:09:27 (662208): wrapper (7.7.26015): starting
00:09:27 (662208): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 00:09:27] Arguments: --nthreads 8
[2025-11-19 00:09:27] Threads: 8
[2025-11-19 00:09:27] Checking for CVMFS
[2025-11-19 00:09:27] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:09:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:09:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:09:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:09:27] 2.11.3.0 1855 84381 231848 153035 3 153 42896950 45568001 4432 130560 0 555105303 99.856 243204142 19823 http://cvmfs-s1bnl.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://206.12.9.162:3129 1
[2025-11-19 00:09:27] CVMFS is ok
[2025-11-19 00:09:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:09:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:09:27] Further information can be found at the LHC@home message board.
[2025-11-19 00:09:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:09:27] Checking for apptainer binary...
[2025-11-19 00:09:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:09:27] Running /usr/bin/apptainer --version
[2025-11-19 00:09:27] apptainer version 1.4.1-1.el9
[2025-11-19 00:09:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:09:27] wns0009.triumf.lcg
[2025-11-19 00:09:27] apptainer works
[2025-11-19 00:09:27] Set ATHENA_PROC_NUMBER=8
[2025-11-19 00:09:27] Set ATHENA_CORE_NUMBER=8
[2025-11-19 00:09:27] Starting ATLAS job with PandaID=6892522907
[2025-11-19 00:09:27] Running command: /usr/bin/apptainer exec -B /cvmfs,/home/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 00:13:43]  *** The last 200 lines of the pilot log: ***
[2025-11-19 00:13:43] 2025-11-19 08:12:55,596 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,596 | INFO     | ..............................
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . Timing measurements:
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . get job = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . initial setup = 2 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . payload setup = 4 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . stage-in = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . payload execution = 55 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . stage-out = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . log creation = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | ..............................
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892522907/pilotlog.txt
[2025-11-19 00:13:43] 2025-11-19 08:12:55,607 | WARNING  | detected the following tail of warning/fatal messages in the pilot log:
[2025-11-19 00:13:43] - Log from pilotlog.txt -
[2025-11-19 00:13:43] 2025-11-19 08:12:55,593 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892522907/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,594 | INFO     | extracted standard info from prmon json
[2025-11-19 00:13:43] 2025-11-19 08:12:55,594 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 00:13:43] 2025-11-19 08:12:55,594 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 00:13:43] 2025-11-19 08:12:55,595 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 00:13:43] 2025-11-19 08:12:55,595 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 00:13:43] 2025-11-19 08:12:55,595 | WARNING  | wrong length of table data, x=[1763539801.0], y=[1259.0] (must be same and length>=4)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,596 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,596 | INFO     | ..............................
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . Timing measurements:
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . get job = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . initial setup = 2 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . payload setup = 4 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . stage-in = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . payload execution = 55 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . stage-out = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . log creation = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | ..............................
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892522907/pilotlog.txt
[2025-11-19 00:13:43] 2025-11-19 08:12:55,607 | WARNING  | 
[2025-11-19 00:13:43] [begin log extracts]
[2025-11-19 00:13:43] - Log from pilotlog.txt -
[2025-11-19 00:13:43] 2025-11-19 08:12:55,593 | INFO     | using path: /home/boinc/slots/0/PanDA_Pilot-6892522907/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,594 | INFO     | extracted standard info from prmon json
[2025-11-19 00:13:43] 2025-11-19 08:12:55,594 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 00:13:43] 2025-11-19 08:12:55,594 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 00:13:43] 2025-11-19 08:12:55,595 | WARNING  | format EVNTtoHITS has no such key: dbData
[2025-11-19 00:13:43] 2025-11-19 08:12:55,595 | WARNING  | format EVNTtoHITS has no such key: dbTime
[2025-11-19 00:13:43] 2025-11-19 08:12:55,595 | WARNING  | wrong length of table data, x=[1763539801.0], y=[1259.0] (must be same and length>=4)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,596 | INFO     | could have reported an average CPU frequency of 2095 MHz (4 samples)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,596 | INFO     | ..............................
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . Timing measurements:
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . get job = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . initial setup = 2 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . payload setup = 4 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . stage-in = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . payload execution = 55 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . stage-out = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | . log creation = 0 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | ..............................
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | building log extracts (sent to the server as 'pilotLog')
[2025-11-19 00:13:43] 2025-11-19 08:12:55,597 | INFO     | executing command: tail -n 20 /home/boinc/slots/0/PanDA_Pilot-6892522907/pilotlog.txt
[2025-11-19 00:13:43] [end log extracts]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,607 | WARNING  | pilotErrorCodes = [1305, 1165] (will report primary/first error code)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,608 | WARNING  | pilotErrorDiags = ['Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return c
[2025-11-19 00:13:43] 2025-11-19 08:12:55,683 | INFO     | 
[2025-11-19 00:13:43] 2025-11-19 08:12:55,683 | INFO     | job summary report
[2025-11-19 00:13:43] 2025-11-19 08:12:55,683 | INFO     | --------------------------------------------------
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | PanDA job id: 6892522907
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | task id: 47493029
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | error 1/2: 1305: Failed to execute payload:PyJobTransforms.transform.execute 2025-11-19 00:10:47,448 CRITICAL Transform executor raised TransformValidationExceptio
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | error 2/2: 1165: Local output file is missing
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | pilot state: failed 
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | transexitcode: 65
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | exeerrorcode: 65
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | exeerrordiag: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFL
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | exitcode: 65
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | exitmsg: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: "IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | cpuconsumptiontime: 46 s
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | nevents: 0
[2025-11-19 00:13:43] 2025-11-19 08:12:55,684 | INFO     | neventsw: 0
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | pid: 672400
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | pgrp: 672400
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | corecount: 8
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | event service: False
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | sizes: {0: 2297193, 4: 2297455, 11: 2297483, 64: 2327287, 184: 2327425}
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | --------------------------------------------------
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | 
[2025-11-19 00:13:43] 2025-11-19 08:12:55,685 | INFO     | executing command: ls -lF /home/boinc/slots/0
[2025-11-19 00:13:43] 2025-11-19 08:12:55,701 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,701 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,701 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,701 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,702 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,703 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,703 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,703 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 00:13:43] 2025-11-19 08:12:55,703 | INFO     | job 6892522907 has completed (purged errors)
[2025-11-19 00:13:43] 2025-11-19 08:12:55,703 | INFO     | overall cleanup function is called
[2025-11-19 00:13:43] 2025-11-19 08:12:56,437 | INFO     | PID=665867 has CPU usage=1.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 00:13:43] 2025-11-19 08:12:56,438 | INFO     | .. there are 12 such processes running
[2025-11-19 00:13:43] 2025-11-19 08:12:56,711 | INFO     | --- collectZombieJob: --- 10, [672400]
[2025-11-19 00:13:43] 2025-11-19 08:12:56,711 | INFO     | zombie collector waiting for pid 672400
[2025-11-19 00:13:43] 2025-11-19 08:12:56,711 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 00:13:43] 2025-11-19 08:12:56,711 | INFO     | collected zombie processes
[2025-11-19 00:13:43] 2025-11-19 08:12:56,711 | INFO     | will attempt to kill all subprocesses of pid=672400
[2025-11-19 00:13:43] 2025-11-19 08:12:56,858 | INFO     | process IDs to be killed: [672400] (in reverse order)
[2025-11-19 00:13:43] 2025-11-19 08:12:56,905 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 00:13:43] 2025-11-19 08:12:56,905 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 00:13:43] 2025-11-19 08:12:56,910 | INFO     | did not find any defunct processes belonging to 672400
[2025-11-19 00:13:43] 2025-11-19 08:12:56,914 | INFO     | did not find any defunct processes belonging to 672400
[2025-11-19 00:13:43] 2025-11-19 08:12:56,915 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 00:13:43] 2025-11-19 08:12:56,915 | INFO     | ready for new job
[2025-11-19 00:13:43] 2025-11-19 08:12:56,915 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 00:13:43] 2025-11-19 08:12:56,917 | INFO     | ***************************************
[2025-11-19 00:13:43] 2025-11-19 08:12:56,917 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 00:13:43] 2025-11-19 08:12:56,917 | INFO     | ***************************************
[2025-11-19 00:13:43] 2025-11-19 08:12:56,917 | INFO     | 
[2025-11-19 00:13:43] 2025-11-19 08:12:56,918 | INFO     | architecture information:
[2025-11-19 00:13:43] 2025-11-19 08:12:56,919 | INFO     | executing command: cat /etc/os-release
[2025-11-19 00:13:43] 2025-11-19 08:12:56,930 | INFO     | cat /etc/os-release:
[2025-11-19 00:13:43] NAME="CentOS Linux"
[2025-11-19 00:13:43] VERSION="7 (Core)"
[2025-11-19 00:13:43] ID="centos"
[2025-11-19 00:13:43] ID_LIKE="rhel fedora"
[2025-11-19 00:13:43] VERSION_ID="7"
[2025-11-19 00:13:43] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 00:13:43] ANSI_COLOR="0;31"
[2025-11-19 00:13:43] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 00:13:43] HOME_URL="https://www.centos.org/"
[2025-11-19 00:13:43] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 00:13:43] 
[2025-11-19 00:13:43] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 00:13:43] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 00:13:43] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 00:13:43] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 00:13:43] 
[2025-11-19 00:13:43] 2025-11-19 08:12:56,930 | INFO     | ***************************************
[2025-11-19 00:13:43] 2025-11-19 08:12:57,432 | INFO     | executing command: df -mP /home/boinc/slots/0
[2025-11-19 00:13:43] 2025-11-19 08:12:57,444 | INFO     | sufficient remaining disk space (1408391708672 B)
[2025-11-19 00:13:43] 2025-11-19 08:12:57,444 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 00:13:43] 2025-11-19 08:12:57,444 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 00:13:43] 2025-11-19 08:12:57,445 | INFO     | update_server=False
[2025-11-19 00:13:43] 2025-11-19 08:12:57,445 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 00:13:43] 2025-11-19 08:12:57,445 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 00:13:43] 2025-11-19 08:12:57,445 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 00:13:43] 2025-11-19 08:12:57,445 | INFO     | aborting loop
[2025-11-19 00:13:43] 2025-11-19 08:12:57,548 | INFO     | all job control threads have been joined
[2025-11-19 00:13:43] 2025-11-19 08:12:57,897 | INFO     | all payload control threads have been joined
[2025-11-19 00:13:43] 2025-11-19 08:12:58,193 | INFO     | all data control threads have been joined
[2025-11-19 00:13:43] 2025-11-19 08:12:58,447 | INFO     | [job] queue monitor thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:58,450 | INFO     | [job] retrieve thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:58,451 | INFO     | [job] job monitor thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:58,553 | INFO     | [job] control thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:58,673 | INFO     | [data] copytool_in thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:58,685 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 00:13:43] 2025-11-19 08:12:58,696 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:58,705 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 00:13:43] 2025-11-19 08:12:58,903 | INFO     | [payload] control thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:58,974 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:59,105 | INFO     | [payload] validate_post thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:59,168 | INFO     | [job] validate thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:59,198 | INFO     | [data] control thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:59,355 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:59,466 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:12:59,685 | INFO     | [payload] failed_post thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:13:00,690 | INFO     | [data] copytool_out thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:13:02,708 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 00:13:43] 2025-11-19 08:13:28,706 | INFO     | PID=665867 has CPU usage=1.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-19 00:13:43] 2025-11-19 08:13:28,706 | INFO     | .. there are 12 such processes running
[2025-11-19 00:13:43] 2025-11-19 08:13:28,706 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 00:13:43] 2025-11-19 08:13:28,706 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 00:13:43] 2025-11-19 08:13:28,706 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 00:13:43] 2025-11-19 08:13:36,515 | INFO     | [monitor] cgroup control has ended
[2025-11-19 00:13:43] 2025-11-19 08:13:38,133 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139754889774912)>', '<ExcThread(monitor, started 139754209277696)>']
[2025-11-19 00:13:43] 2025-11-19 08:13:38,756 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 00:13:43] 2025-11-19 08:13:38,756 | INFO     | [monitor] control thread has ended
[2025-11-19 00:13:43] 2025-11-19 08:13:43,158 | INFO     | all workflow threads have been joined
[2025-11-19 00:13:43] 2025-11-19 08:13:43,158 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 00:13:43] 2025-11-19 08:13:43,159 | INFO     | traces error code: 0
[2025-11-19 00:13:43] 2025-11-19 08:13:43,159 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 00:13:43] 2025-11-19 08:13:43,261 [wrapper] ==== pilot stdout END ====
[2025-11-19 00:13:43] 2025-11-19 08:13:43,263 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 00:13:43] 2025-11-19 08:13:43,266 [wrapper] pilotpid: 665867
[2025-11-19 00:13:43] 2025-11-19 08:13:43,267 [wrapper] Pilot exit status: 0
[2025-11-19 00:13:43] 2025-11-19 08:13:43,276 [wrapper] pandaids: 6892522907
[2025-11-19 00:13:43] 2025-11-19 08:13:43,306 [wrapper] cleanup supervisor_pilot  665873 665868
[2025-11-19 00:13:43] 2025-11-19 08:13:43,308 [wrapper] Test setup, not cleaning
[2025-11-19 00:13:43] 2025-11-19 08:13:43,310 [wrapper] apfmon messages muted
[2025-11-19 00:13:43] 2025-11-19 08:13:43,313 [wrapper] ==== wrapper stdout END ====
[2025-11-19 00:13:43] 2025-11-19 08:13:43,316 [wrapper] ==== wrapper stderr END ====
[2025-11-19 00:13:43]  *** Error codes and diagnostics ***
[2025-11-19 00:13:43]     "exeErrorCode": 65,
[2025-11-19 00:13:43]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 cannot be opened - STOP\"",
[2025-11-19 00:13:43]     "pilotErrorCode": 1305,
[2025-11-19 00:13:43]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (33); Logfile error in log.EVNTtoHITS: \"IOVDbSvc            FATAL Conditions database connection COOLOFL_TRT/OFLP200 canno",
[2025-11-19 00:13:43]  *** Listing of results directory ***
[2025-11-19 00:13:43] total 404724
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc    576529 Nov 18 23:00 pilot3.tar.gz
[2025-11-19 00:13:43] -rwx------. 1 boinc boinc     36292 Nov 18 23:06 runpilot2-wrapper.sh
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc      5112 Nov 18 23:07 queuedata.json
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc       100 Nov 19 00:09 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 00:13:43] -rwxr-xr-x. 1 boinc boinc      7986 Nov 19 00:09 run_atlas
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc       105 Nov 19 00:09 job.xml
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc      6444 Nov 19 00:09 init_data.xml
[2025-11-19 00:13:43] -rw-r--r--. 2 boinc boinc 410231353 Nov 19 00:09 EVNT.47493027._000058.pool.root.1
[2025-11-19 00:13:43] -rw-r--r--. 2 boinc boinc     15120 Nov 19 00:09 start_atlas.sh
[2025-11-19 00:13:43] drwxrwx--x. 2 boinc boinc      4096 Nov 19 00:09 shared
[2025-11-19 00:13:43] -rw-r--r--. 2 boinc boinc    590094 Nov 19 00:09 input.tar.gz
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc         0 Nov 19 00:09 boinc_lockfile
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc      2771 Nov 19 00:09 pandaJob.out
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc    992806 Nov 19 00:09 agis_schedconf.cvmfs.json
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc   1525063 Nov 19 00:09 agis_ddmendpoints.agis.ALL.json
[2025-11-19 00:13:43] drwx------. 5 boinc boinc      4096 Nov 19 00:09 pilot3
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc       523 Nov 19 00:10 boinc_task_state.xml
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc       984 Nov 19 00:10 memory_monitor_summary.json
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc     48526 Nov 19 00:10 log.47493029._000532.job.log.tgz.1
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc        95 Nov 19 00:12 pilot_heartbeat.json
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc     10316 Nov 19 00:12 heartbeat.json
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc      8192 Nov 19 00:13 boinc_mmap_file
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc        23 Nov 19 00:13 wrapper_checkpoint.txt
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc      4822 Nov 19 00:13 pilotlog.txt
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc     93133 Nov 19 00:13 log.47493029._000532.job.log.1
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc       186 Nov 19 00:13 output.list
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc       620 Nov 19 00:13 runtime_log
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc    163840 Nov 19 00:13 result.tar.gz
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc      8526 Nov 19 00:13 runtime_log.err
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc       644 Nov 19 00:13 oeoKDm6Rrf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmNrFKDmYLcCPo.diag
[2025-11-19 00:13:43] -rw-r--r--. 1 boinc boinc     22421 Nov 19 00:13 stderr.txt
[2025-11-19 00:13:43] No HITS result produced
[2025-11-19 00:13:43]  *** Contents of shared directory: ***
[2025-11-19 00:13:43] total 401380
[2025-11-19 00:13:43] -rw-r--r--. 2 boinc boinc 410231353 Nov 19 00:09 ATLAS.root_0
[2025-11-19 00:13:43] -rw-r--r--. 2 boinc boinc     15120 Nov 19 00:09 start_atlas.sh
[2025-11-19 00:13:43] -rw-r--r--. 2 boinc boinc    590094 Nov 19 00:09 input.tar.gz
[2025-11-19 00:13:43] -rw-------. 1 boinc boinc    163840 Nov 19 00:13 result.tar.gz
00:13:44 (662208): run_atlas exited; CPU time 46.049288
00:13:44 (662208): called boinc_finish(0)

</stderr_txt>
]]>

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