Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
07:56:07 (14252): wrapper (7.7.26015): starting
07:56:07 (14252): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 07:56:07] Arguments: --nthreads 8
[2025-11-19 07:56:07] Threads: 8
[2025-11-19 07:56:07] Checking for CVMFS
[2025-11-19 07:56:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 07:56:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 07:56:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 07:56:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 07:56:07] 2.11.2.0 2910 37364 80576 153045 2 81 11513993 20275201 1 130560 0 3288196 99.292 2695967 30953 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 07:56:07] CVMFS is ok
[2025-11-19 07:56:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 07:56:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 07:56:07] Further information can be found at the LHC@home message board.
[2025-11-19 07:56:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 07:56:07] Checking for apptainer binary...
[2025-11-19 07:56:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 07:56:07] Running /usr/bin/apptainer --version
[2025-11-19 07:56:07] apptainer version 1.3.2-1.el7
[2025-11-19 07:56:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 07:56:09] c-204-13.aglt2.org
[2025-11-19 07:56:09] apptainer works
[2025-11-19 07:56:09] Set ATHENA_PROC_NUMBER=8
[2025-11-19 07:56:09] Set ATHENA_CORE_NUMBER=8
[2025-11-19 07:56:09] Starting ATLAS job with PandaID=6891592176
[2025-11-19 07:56:09] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 20:20:07]  *** The last 200 lines of the pilot log: ***
[2025-11-19 20:20:07] 2025-11-20 01:19:33,072 | INFO     | monitor loop #3263: job 0:6891592176 is in state 'finished'
[2025-11-19 20:20:07] 2025-11-20 01:19:33,072 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 20:20:07] 2025-11-20 01:19:34,151 | INFO     | time since job start (44586s) is within the limit (172800.0s)
[2025-11-19 20:20:07] 2025-11-20 01:19:34,881 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-19 20:20:07] 2025-11-20 01:19:34,889 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1712.5
[2025-11-19 20:20:07] 2025-11-20 01:19:34,892 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891592176/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 20:20:07] 2025-11-20 01:19:34,893 | INFO     | extracted standard info from prmon json
[2025-11-19 20:20:07] 2025-11-20 01:19:34,893 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 20:20:07] 2025-11-20 01:19:34,893 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 20:20:07] 2025-11-20 01:19:34,906 | INFO     | fitting pss+swap vs Time
[2025-11-19 20:20:07] 2025-11-20 01:19:34,907 | INFO     | sum of square deviations: 121124438344.16153
[2025-11-19 20:20:07] 2025-11-20 01:19:34,919 | INFO     | sum of deviations: 832958589491.9714
[2025-11-19 20:20:07] 2025-11-20 01:19:34,919 | INFO     | mean x: 1763579285.6757865
[2025-11-19 20:20:07] 2025-11-20 01:19:34,919 | INFO     | mean y: 3173056.3543091654
[2025-11-19 20:20:07] 2025-11-20 01:19:34,919 | INFO     | intersect: -12124755331.472723
[2025-11-19 20:20:07] 2025-11-20 01:19:34,920 | INFO     | chi2: 6.751434308589731
[2025-11-19 20:20:07] 2025-11-20 01:19:34,921 | INFO     | sum of square deviations: 118656105519.36223
[2025-11-19 20:20:07] 2025-11-20 01:19:34,934 | INFO     | sum of deviations: 1131153565527.822
[2025-11-19 20:20:07] 2025-11-20 01:19:34,934 | INFO     | mean x: 1763579133.1804407
[2025-11-19 20:20:07] 2025-11-20 01:19:34,935 | INFO     | mean y: 3191481.367768595
[2025-11-19 20:20:07] 2025-11-20 01:19:34,935 | INFO     | intersect: -16809081396.255016
[2025-11-19 20:20:07] 2025-11-20 01:19:34,935 | INFO     | chi2: 3.0074455604384758
[2025-11-19 20:20:07] 2025-11-20 01:19:34,936 | INFO     | current chi2=3.0074455604384758 (change=55.45471639097257 %)
[2025-11-19 20:20:07] 2025-11-20 01:19:34,936 | INFO     | sum of square deviations: 116221540769.53119
[2025-11-19 20:20:07] 2025-11-20 01:19:34,957 | INFO     | sum of deviations: 1207405963762.2026
[2025-11-19 20:20:07] 2025-11-20 01:19:34,957 | INFO     | mean x: 1763578980.6851594
[2025-11-19 20:20:07] 2025-11-20 01:19:34,957 | INFO     | mean y: 3196245.93481276
[2025-11-19 20:20:07] 2025-11-20 01:19:34,957 | INFO     | intersect: -18318328014.93751
[2025-11-19 20:20:07] 2025-11-20 01:19:34,958 | INFO     | chi2: 2.5747868574931925
[2025-11-19 20:20:07] 2025-11-20 01:19:34,958 | INFO     | current chi2=2.5747868574931925 (change=14.386252194776322 %)
[2025-11-19 20:20:07] 2025-11-20 01:19:34,958 | INFO     | right removable region: 720
[2025-11-19 20:20:07] 2025-11-20 01:19:34,959 | INFO     | sum of square deviations: 118655804179.36206
[2025-11-19 20:20:07] 2025-11-20 01:19:34,980 | INFO     | sum of deviations: 606861432264.5781
[2025-11-19 20:20:07] 2025-11-20 01:19:34,980 | INFO     | mean x: 1763579438.1804407
[2025-11-19 20:20:07] 2025-11-20 01:19:34,980 | INFO     | mean y: 3186999.758953168
[2025-11-19 20:20:07] 2025-11-20 01:19:34,980 | INFO     | intersect: -9016585367.623405
[2025-11-19 20:20:07] 2025-11-20 01:19:34,981 | INFO     | chi2: 4.364656756252851
[2025-11-19 20:20:07] 2025-11-20 01:19:34,981 | INFO     | current chi2=4.364656756252851 (change=35.35215545680753 %)
[2025-11-19 20:20:07] 2025-11-20 01:19:34,982 | INFO     | sum of square deviations: 116221071070.62982
[2025-11-19 20:20:07] 2025-11-20 01:19:34,996 | INFO     | sum of deviations: 561689006172.5117
[2025-11-19 20:20:07] 2025-11-20 01:19:34,996 | INFO     | mean x: 1763579590.6809986
[2025-11-19 20:20:07] 2025-11-20 01:19:34,996 | INFO     | mean y: 3189827.789181692
[2025-11-19 20:20:07] 2025-11-20 01:19:34,996 | INFO     | intersect: -8520077583.795232
[2025-11-19 20:20:07] 2025-11-20 01:19:34,997 | INFO     | chi2: 4.326813248995133
[2025-11-19 20:20:07] 2025-11-20 01:19:34,997 | INFO     | current chi2=4.326813248995133 (change=0.8670442917075267 %)
[2025-11-19 20:20:07] 2025-11-20 01:19:34,997 | INFO     | left removable region: 20
[2025-11-19 20:20:07] 2025-11-20 01:19:34,998 | INFO     | sum of square deviations: 106358882398.18715
[2025-11-19 20:20:07] 2025-11-20 01:19:35,008 | INFO     | sum of deviations: 874378175697.6294
[2025-11-19 20:20:07] 2025-11-20 01:19:35,008 | INFO     | mean x: 1763579560.1957142
[2025-11-19 20:20:07] 2025-11-20 01:19:35,008 | INFO     | mean y: 3217207.01
[2025-11-19 20:20:07] 2025-11-20 01:19:35,009 | INFO     | intersect: -14495200261.955803
[2025-11-19 20:20:07] 2025-11-20 01:19:35,009 | INFO     | chi2: 0.10089964405280377
[2025-11-19 20:20:07] 2025-11-20 01:19:35,009 | INFO     | current memory leak: 8.22 B/s (using 700 data points, chi2=0.10)
[2025-11-19 20:20:07] 2025-11-20 01:19:35,010 | INFO     | could have reported an average CPU frequency of 2170 MHz (28 samples)
[2025-11-19 20:20:07] 2025-11-20 01:19:35,010 | INFO     | ..............................
[2025-11-19 20:20:07] 2025-11-20 01:19:35,010 | INFO     | . Timing measurements:
[2025-11-19 20:20:07] 2025-11-20 01:19:35,010 | INFO     | . get job = 0 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,011 | INFO     | . initial setup = 2 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,011 | INFO     | . payload setup = 9 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,011 | INFO     | . stage-in = 0 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,011 | INFO     | . payload execution = 44544 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,011 | INFO     | . stage-out = 3 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,011 | INFO     | . log creation = 0 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,011 | INFO     | ..............................
[2025-11-19 20:20:07] 2025-11-20 01:19:35,107 | INFO     | 
[2025-11-19 20:20:07] 2025-11-20 01:19:35,107 | INFO     | job summary report
[2025-11-19 20:20:07] 2025-11-20 01:19:35,108 | INFO     | --------------------------------------------------
[2025-11-19 20:20:07] 2025-11-20 01:19:35,108 | INFO     | PanDA job id: 6891592176
[2025-11-19 20:20:07] 2025-11-20 01:19:35,108 | INFO     | task id: 47493068
[2025-11-19 20:20:07] 2025-11-20 01:19:35,108 | INFO     | errors: (none)
[2025-11-19 20:20:07] 2025-11-20 01:19:35,108 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 20:20:07] 2025-11-20 01:19:35,108 | INFO     | pilot state: finished 
[2025-11-19 20:20:07] 2025-11-20 01:19:35,109 | INFO     | transexitcode: 0
[2025-11-19 20:20:07] 2025-11-20 01:19:35,109 | INFO     | exeerrorcode: 0
[2025-11-19 20:20:07] 2025-11-20 01:19:35,109 | INFO     | exeerrordiag: 
[2025-11-19 20:20:07] 2025-11-20 01:19:35,109 | INFO     | exitcode: 0
[2025-11-19 20:20:07] 2025-11-20 01:19:35,109 | INFO     | exitmsg: OK
[2025-11-19 20:20:07] 2025-11-20 01:19:35,109 | INFO     | cpuconsumptiontime: 344564 s
[2025-11-19 20:20:07] 2025-11-20 01:19:35,110 | INFO     | nevents: 1000
[2025-11-19 20:20:07] 2025-11-20 01:19:35,110 | INFO     | neventsw: 0
[2025-11-19 20:20:07] 2025-11-20 01:19:35,110 | INFO     | pid: 24314
[2025-11-19 20:20:07] 2025-11-20 01:19:35,110 | INFO     | pgrp: 24314
[2025-11-19 20:20:07] 2025-11-20 01:19:35,110 | INFO     | corecount: 8
[2025-11-19 20:20:07] 2025-11-20 01:19:35,110 | INFO     | event service: False
[2025-11-19 20:20:07] 2025-11-20 01:19:35,111 | INFO     | sizes: {0: 2297199, 6: 2297461, 11: 2297489, 44556: 2343237, 44557: 2343236, 44561: 2352470, 44569: 2352660}
[2025-11-19 20:20:07] 2025-11-20 01:19:35,111 | INFO     | --------------------------------------------------
[2025-11-19 20:20:07] 2025-11-20 01:19:35,111 | INFO     | 
[2025-11-19 20:20:07] 2025-11-20 01:19:35,111 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-19 20:20:07] 2025-11-20 01:19:35,142 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,142 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,142 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,143 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,143 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,143 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,143 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,143 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,143 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,144 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,144 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,144 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,144 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,145 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,145 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,145 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,145 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,145 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 20:20:07] 2025-11-20 01:19:35,146 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,146 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 20:20:07] 2025-11-20 01:19:35,146 | INFO     | job 6891592176 has completed (purged errors)
[2025-11-19 20:20:07] 2025-11-20 01:19:35,146 | INFO     | overall cleanup function is called
[2025-11-19 20:20:07] 2025-11-20 01:19:36,162 | INFO     | --- collectZombieJob: --- 10, [24314]
[2025-11-19 20:20:07] 2025-11-20 01:19:36,162 | INFO     | zombie collector waiting for pid 24314
[2025-11-19 20:20:07] 2025-11-20 01:19:36,163 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 20:20:07] 2025-11-20 01:19:36,163 | INFO     | collected zombie processes
[2025-11-19 20:20:07] 2025-11-20 01:19:36,163 | INFO     | will attempt to kill all subprocesses of pid=24314
[2025-11-19 20:20:07] 2025-11-20 01:19:36,258 | INFO     | process IDs to be killed: [24314] (in reverse order)
[2025-11-19 20:20:07] 2025-11-20 01:19:36,319 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 20:20:07] 2025-11-20 01:19:36,319 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 20:20:07] 2025-11-20 01:19:36,324 | INFO     | did not find any defunct processes belonging to 24314
[2025-11-19 20:20:07] 2025-11-20 01:19:36,328 | INFO     | did not find any defunct processes belonging to 24314
[2025-11-19 20:20:07] 2025-11-20 01:19:36,331 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 20:20:07] 2025-11-20 01:19:36,331 | INFO     | ready for new job
[2025-11-19 20:20:07] 2025-11-20 01:19:36,331 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 20:20:07] 2025-11-20 01:19:36,335 | INFO     | ***************************************
[2025-11-19 20:20:07] 2025-11-20 01:19:36,335 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 20:20:07] 2025-11-20 01:19:36,335 | INFO     | ***************************************
[2025-11-19 20:20:07] 2025-11-20 01:19:36,335 | INFO     | 
[2025-11-19 20:20:07] 2025-11-20 01:19:36,336 | INFO     | architecture information:
[2025-11-19 20:20:07] 2025-11-20 01:19:36,336 | INFO     | executing command: cat /etc/os-release
[2025-11-19 20:20:07] 2025-11-20 01:19:36,357 | INFO     | cat /etc/os-release:
[2025-11-19 20:20:07] NAME="CentOS Linux"
[2025-11-19 20:20:07] VERSION="7 (Core)"
[2025-11-19 20:20:07] ID="centos"
[2025-11-19 20:20:07] ID_LIKE="rhel fedora"
[2025-11-19 20:20:07] VERSION_ID="7"
[2025-11-19 20:20:07] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 20:20:07] ANSI_COLOR="0;31"
[2025-11-19 20:20:07] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 20:20:07] HOME_URL="https://www.centos.org/"
[2025-11-19 20:20:07] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 20:20:07] 
[2025-11-19 20:20:07] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 20:20:07] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 20:20:07] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 20:20:07] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 20:20:07] 
[2025-11-19 20:20:07] 2025-11-20 01:19:36,358 | INFO     | ***************************************
[2025-11-19 20:20:07] 2025-11-20 01:19:36,859 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-19 20:20:07] 2025-11-20 01:19:36,884 | INFO     | sufficient remaining disk space (17461936128 B)
[2025-11-19 20:20:07] 2025-11-20 01:19:36,884 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 20:20:07] 2025-11-20 01:19:36,885 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 20:20:07] 2025-11-20 01:19:36,885 | INFO     | update_server=False
[2025-11-19 20:20:07] 2025-11-20 01:19:36,885 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 20:20:07] 2025-11-20 01:19:36,885 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 20:20:07] 2025-11-20 01:19:36,886 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 20:20:07] 2025-11-20 01:19:36,886 | INFO     | aborting loop
[2025-11-19 20:20:07] 2025-11-20 01:19:37,028 | INFO     | all data control threads have been joined
[2025-11-19 20:20:07] 2025-11-20 01:19:37,030 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 20:20:07] 2025-11-20 01:19:37,747 | INFO     | all job control threads have been joined
[2025-11-19 20:20:07] 2025-11-20 01:19:37,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 20:20:07] 2025-11-20 01:19:37,778 | INFO     | all payload control threads have been joined
[2025-11-19 20:20:07] 2025-11-20 01:19:37,888 | INFO     | [job] retrieve thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:37,892 | INFO     | [job] queue monitor thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:37,892 | INFO     | [job] job monitor thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:38,034 | INFO     | [data] control thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:38,241 | INFO     | [payload] failed_post thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:38,414 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:38,535 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:38,753 | INFO     | [job] control thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:38,783 | INFO     | [payload] control thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:39,031 | INFO     | [data] copytool_out thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:39,121 | INFO     | [data] copytool_in thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:39,156 | INFO     | [job] validate thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:39,158 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:39,461 | INFO     | [payload] validate_post thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:41,780 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:42,141 | INFO     | [monitor] cgroup control has ended
[2025-11-19 20:20:07] 2025-11-20 01:19:47,560 | INFO     | job.realtimelogging is not enabled
[2025-11-19 20:20:07] 2025-11-20 01:19:48,565 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 20:20:07] 2025-11-20 01:19:49,653 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140446802810688)>', '<ExcThread(monitor, started 140446210705152)>']
[2025-11-19 20:20:07] 2025-11-20 01:19:54,654 | INFO     | all workflow threads have been joined
[2025-11-19 20:20:07] 2025-11-20 01:19:54,654 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 20:20:07] 2025-11-20 01:19:54,655 | INFO     | traces error code: 0
[2025-11-19 20:20:07] 2025-11-20 01:19:54,655 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 20:20:07] 2025-11-20 01:20:07,380 | INFO     | PID=17947 has CPU usage=5.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-19 20:20:07] 2025-11-20 01:20:07,381 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 20:20:07] 2025-11-20 01:20:07,381 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 20:20:07] 2025-11-20 01:20:07,381 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 20:20:07] 2025-11-20 01:20:07,381 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 20:20:07] 2025-11-20 01:20:07,381 | INFO     | [monitor] control thread has ended
[2025-11-19 20:20:07] 2025-11-20 01:20:07,495 [wrapper] ==== pilot stdout END ====
[2025-11-19 20:20:07] 2025-11-20 01:20:07,499 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 20:20:07] 2025-11-20 01:20:07,503 [wrapper] pilotpid: 17947
[2025-11-19 20:20:07] 2025-11-20 01:20:07,507 [wrapper] Pilot exit status: 0
[2025-11-19 20:20:07] 2025-11-20 01:20:07,519 [wrapper] pandaids: 6891592176
[2025-11-19 20:20:07] 2025-11-20 01:20:07,561 [wrapper] cleanup supervisor_pilot 22333 17948
[2025-11-19 20:20:07] 2025-11-20 01:20:07,565 [wrapper] Test setup, not cleaning
[2025-11-19 20:20:07] 2025-11-20 01:20:07,569 [wrapper] apfmon messages muted
[2025-11-19 20:20:07] 2025-11-20 01:20:07,574 [wrapper] ==== wrapper stdout END ====
[2025-11-19 20:20:07] 2025-11-20 01:20:07,578 [wrapper] ==== wrapper stderr END ====
[2025-11-19 20:20:07]  *** Error codes and diagnostics ***
[2025-11-19 20:20:07]     "exeErrorCode": 0,
[2025-11-19 20:20:07]     "exeErrorDiag": "",
[2025-11-19 20:20:07]     "pilotErrorCode": 0,
[2025-11-19 20:20:07]     "pilotErrorDiag": "",
[2025-11-19 20:20:07]  *** Listing of results directory ***
[2025-11-19 20:20:07] total 1322576
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 12:59 pilot3.tar.gz
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 13:21 queuedata.json
[2025-11-19 20:20:07] -rwx------ 1 boincer umatlas     36292 Nov 18 13:23 runpilot2-wrapper.sh
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas       100 Nov 19 07:56 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 20:20:07] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 07:56 run_atlas
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas       105 Nov 19 07:56 job.xml
[2025-11-19 20:20:07] -rw-r--r-- 2 boincer umatlas 409568386 Nov 19 07:56 EVNT.47493065._000643.pool.root.1
[2025-11-19 20:20:07] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 07:56 start_atlas.sh
[2025-11-19 20:20:07] drwxrwx--x 2 boincer umatlas      4096 Nov 19 07:56 shared
[2025-11-19 20:20:07] -rw-r--r-- 2 boincer umatlas    590097 Nov 19 07:56 input.tar.gz
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas         0 Nov 19 07:56 boinc_lockfile
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas      2772 Nov 19 07:56 pandaJob.out
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas    989442 Nov 19 07:56 agis_schedconf.cvmfs.json
[2025-11-19 20:20:07] drwx------ 5 boincer umatlas      4096 Nov 19 07:56 pilot3
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas       532 Nov 19 20:10 boinc_task_state.xml
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas 924649659 Nov 19 20:18 HITS.47493068._005922.pool.root.1
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas      1065 Nov 19 20:19 memory_monitor_summary.json
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas   1525063 Nov 19 20:19 agis_ddmendpoints.agis.ALL.json
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas   1973906 Nov 19 20:19 log.47493068._005922.job.log.tgz.1
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas      8672 Nov 19 20:19 heartbeat.json
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas      5912 Nov 19 20:19 init_data.xml
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas        29 Nov 19 20:20 wrapper_checkpoint.txt
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas      8192 Nov 19 20:20 boinc_mmap_file
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas        95 Nov 19 20:20 pilot_heartbeat.json
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas       745 Nov 19 20:20 pilotlog.txt
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas   6121071 Nov 19 20:20 log.47493068._005922.job.log.1
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas       353 Nov 19 20:20 output.list
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas       620 Nov 19 20:20 runtime_log
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas   8110080 Nov 19 20:20 result.tar.gz
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas      8704 Nov 19 20:20 runtime_log.err
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas       668 Nov 19 20:20 DhFNDmJXff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmcgFKDmuoGaFo.diag
[2025-11-19 20:20:07] -rw-r--r-- 1 boincer umatlas     21267 Nov 19 20:20 stderr.txt
[2025-11-19 20:20:07] HITS file was successfully produced:
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas 924649659 Nov 19 20:18 shared/HITS.pool.root.1
[2025-11-19 20:20:07]  *** Contents of shared directory: ***
[2025-11-19 20:20:07] total 1311472
[2025-11-19 20:20:07] -rw-r--r-- 2 boincer umatlas 409568386 Nov 19 07:56 ATLAS.root_0
[2025-11-19 20:20:07] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 07:56 start_atlas.sh
[2025-11-19 20:20:07] -rw-r--r-- 2 boincer umatlas    590097 Nov 19 07:56 input.tar.gz
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas 924649659 Nov 19 20:18 HITS.pool.root.1
[2025-11-19 20:20:07] -rw------- 1 boincer umatlas   8110080 Nov 19 20:20 result.tar.gz
20:20:09 (14252): run_atlas exited; CPU time 342549.793616
20:20:09 (14252): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN