Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
14:24:16 (17726): wrapper (7.7.26015): starting
14:24:16 (17726): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 14:24:16] Arguments: --nthreads 8
[2025-11-19 14:24:16] Threads: 8
[2025-11-19 14:24:16] Checking for CVMFS
[2025-11-19 14:24:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 14:24:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 14:24:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 14:24:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 14:24:16] 2.11.2.0 3026 68947 88428 153055 0 81 10999447 20275200 1 130560 0 22114992 99.926 3332928 32227 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 14:24:16] CVMFS is ok
[2025-11-19 14:24:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 14:24:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 14:24:16] Further information can be found at the LHC@home message board.
[2025-11-19 14:24:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 14:24:16] Checking for apptainer binary...
[2025-11-19 14:24:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 14:24:16] Running /usr/bin/apptainer --version
[2025-11-19 14:24:16] apptainer version 1.3.2-1.el7
[2025-11-19 14:24:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 14:24:18] c-204-25.aglt2.org
[2025-11-19 14:24:18] apptainer works
[2025-11-19 14:24:18] Set ATHENA_PROC_NUMBER=8
[2025-11-19 14:24:18] Set ATHENA_CORE_NUMBER=8
[2025-11-19 14:24:18] Starting ATLAS job with PandaID=6891571627
[2025-11-19 14:24:18] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
19:29:14 (304): wrapper (7.7.26015): starting
19:29:14 (304): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 19:29:14] Arguments: --nthreads 8
[2025-11-19 19:29:14] Threads: 8
[2025-11-19 19:29:14] This job has been restarted, cleaning up previous attempt
[2025-11-19 19:29:14] Checking for CVMFS
[2025-11-19 19:29:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:29:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:29:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:29:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:29:15] 2.11.2.0 3026 69251 88780 153063 1 1 15564278 20275201 1 130560 0 22250337 99.926 3343650 32235 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 19:29:15] CVMFS is ok
[2025-11-19 19:29:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 19:29:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 19:29:15] Further information can be found at the LHC@home message board.
[2025-11-19 19:29:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:29:15] Checking for apptainer binary...
[2025-11-19 19:29:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:29:15] Running /usr/bin/apptainer --version
[2025-11-19 19:29:15] apptainer version 1.3.2-1.el7
[2025-11-19 19:29:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:29:17] c-204-25.aglt2.org
[2025-11-19 19:29:17] apptainer works
[2025-11-19 19:29:17] Set ATHENA_PROC_NUMBER=8
[2025-11-19 19:29:17] Set ATHENA_CORE_NUMBER=8
[2025-11-19 19:29:17] Starting ATLAS job with PandaID=6891571627
[2025-11-19 19:29:17] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 07:47:09]  *** The last 200 lines of the pilot log: ***
[2025-11-20 07:47:09] 2025-11-20 12:46:34,159 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:47:09] 2025-11-20 12:46:36,007 | INFO     | time since job start (44219s) is within the limit (172800.0s)
[2025-11-20 07:47:09] 2025-11-20 12:46:36,663 | INFO     | monitor loop #3258: job 0:6891571627 is in state 'finished'
[2025-11-20 07:47:09] 2025-11-20 12:46:36,663 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,363 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 07:47:09] 2025-11-20 12:46:37,365 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-20 07:47:09] 2025-11-20 12:46:37,367 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891571627/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,367 | INFO     | extracted standard info from prmon json
[2025-11-20 07:47:09] 2025-11-20 12:46:37,368 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 07:47:09] 2025-11-20 12:46:37,368 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 07:47:09] 2025-11-20 12:46:37,380 | INFO     | fitting pss+swap vs Time
[2025-11-20 07:47:09] 2025-11-20 12:46:37,381 | INFO     | sum of square deviations: 118166062097.06767
[2025-11-20 07:47:09] 2025-11-20 12:46:37,392 | INFO     | sum of deviations: 691594889329.1836
[2025-11-20 07:47:09] 2025-11-20 12:46:37,392 | INFO     | mean x: 1763620692.515862
[2025-11-20 07:47:09] 2025-11-20 12:46:37,392 | INFO     | mean y: 2866537.1144827586
[2025-11-20 07:47:09] 2025-11-20 12:46:37,392 | INFO     | intersect: -10319141626.762827
[2025-11-20 07:47:09] 2025-11-20 12:46:37,393 | INFO     | chi2: 6.500303852343305
[2025-11-20 07:47:09] 2025-11-20 12:46:37,394 | INFO     | sum of square deviations: 115738186455.72809
[2025-11-20 07:47:09] 2025-11-20 12:46:37,404 | INFO     | sum of deviations: 951133228179.8435
[2025-11-20 07:47:09] 2025-11-20 12:46:37,405 | INFO     | mean x: 1763620540.0194445
[2025-11-20 07:47:09] 2025-11-20 12:46:37,405 | INFO     | mean y: 2882841.011111111
[2025-11-20 07:47:09] 2025-11-20 12:46:37,405 | INFO     | intersect: -14490502176.34116
[2025-11-20 07:47:09] 2025-11-20 12:46:37,406 | INFO     | chi2: 2.9549721130423445
[2025-11-20 07:47:09] 2025-11-20 12:46:37,406 | INFO     | current chi2=2.9549721130423445 (change=54.54101561764529 %)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,407 | INFO     | sum of square deviations: 113343799814.37022
[2025-11-20 07:47:09] 2025-11-20 12:46:37,417 | INFO     | sum of deviations: 1027403893765.7842
[2025-11-20 07:47:09] 2025-11-20 12:46:37,417 | INFO     | mean x: 1763620387.523077
[2025-11-20 07:47:09] 2025-11-20 12:46:37,418 | INFO     | mean y: 2887695.225174825
[2025-11-20 07:47:09] 2025-11-20 12:46:37,418 | INFO     | intersect: -15983434064.178234
[2025-11-20 07:47:09] 2025-11-20 12:46:37,418 | INFO     | chi2: 2.539540114868301
[2025-11-20 07:47:09] 2025-11-20 12:46:37,419 | INFO     | current chi2=2.539540114868301 (change=14.058745134698691 %)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,419 | INFO     | right removable region: 714
[2025-11-20 07:47:09] 2025-11-20 12:46:37,419 | INFO     | sum of square deviations: 115737958315.72813
[2025-11-20 07:47:09] 2025-11-20 12:46:37,430 | INFO     | sum of deviations: 490106208395.3334
[2025-11-20 07:47:09] 2025-11-20 12:46:37,430 | INFO     | mean x: 1763620845.0194445
[2025-11-20 07:47:09] 2025-11-20 12:46:37,431 | INFO     | mean y: 2879169.8333333335
[2025-11-20 07:47:09] 2025-11-20 12:46:37,431 | INFO     | intersect: -7465383947.799285
[2025-11-20 07:47:09] 2025-11-20 12:46:37,432 | INFO     | chi2: 4.134655636212499
[2025-11-20 07:47:09] 2025-11-20 12:46:37,432 | INFO     | current chi2=4.134655636212499 (change=36.392886699873415 %)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,432 | INFO     | sum of square deviations: 113343387332.41415
[2025-11-20 07:47:09] 2025-11-20 12:46:37,443 | INFO     | sum of deviations: 449763613224.595
[2025-11-20 07:47:09] 2025-11-20 12:46:37,443 | INFO     | mean x: 1763620997.5216782
[2025-11-20 07:47:09] 2025-11-20 12:46:37,443 | INFO     | mean y: 2881737.6713286713
[2025-11-20 07:47:09] 2025-11-20 12:46:37,443 | INFO     | intersect: -6995431713.803136
[2025-11-20 07:47:09] 2025-11-20 12:46:37,444 | INFO     | chi2: 4.093589002660104
[2025-11-20 07:47:09] 2025-11-20 12:46:37,444 | INFO     | current chi2=4.093589002660104 (change=0.9932298398135485 %)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,444 | INFO     | left removable region: 20
[2025-11-20 07:47:09] 2025-11-20 12:46:37,445 | INFO     | sum of square deviations: 103647131625.3026
[2025-11-20 07:47:09] 2025-11-20 12:46:37,455 | INFO     | sum of deviations: 741791033898.3881
[2025-11-20 07:47:09] 2025-11-20 12:46:37,455 | INFO     | mean x: 1763620967.0317004
[2025-11-20 07:47:09] 2025-11-20 12:46:37,455 | INFO     | mean y: 2906968.7550432277
[2025-11-20 07:47:09] 2025-11-20 12:46:37,455 | INFO     | intersect: -12619132831.33094
[2025-11-20 07:47:09] 2025-11-20 12:46:37,456 | INFO     | chi2: 0.07321344146832055
[2025-11-20 07:47:09] 2025-11-20 12:46:37,456 | INFO     | current memory leak: 7.16 B/s (using 694 data points, chi2=0.07)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,457 | INFO     | could have reported an average CPU frequency of 2162 MHz (28 samples)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,457 | INFO     | ..............................
[2025-11-20 07:47:09] 2025-11-20 12:46:37,457 | INFO     | . Timing measurements:
[2025-11-20 07:47:09] 2025-11-20 12:46:37,457 | INFO     | . get job = 0 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,457 | INFO     | . initial setup = 3 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,457 | INFO     | . payload setup = 9 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,458 | INFO     | . stage-in = 0 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,458 | INFO     | . payload execution = 44178 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,458 | INFO     | . stage-out = 3 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,458 | INFO     | . log creation = 0 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,458 | INFO     | ..............................
[2025-11-20 07:47:09] 2025-11-20 12:46:37,547 | INFO     | 
[2025-11-20 07:47:09] 2025-11-20 12:46:37,547 | INFO     | job summary report
[2025-11-20 07:47:09] 2025-11-20 12:46:37,548 | INFO     | --------------------------------------------------
[2025-11-20 07:47:09] 2025-11-20 12:46:37,548 | INFO     | PanDA job id: 6891571627
[2025-11-20 07:47:09] 2025-11-20 12:46:37,548 | INFO     | task id: 47493068
[2025-11-20 07:47:09] 2025-11-20 12:46:37,548 | INFO     | errors: (none)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,548 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 07:47:09] 2025-11-20 12:46:37,548 | INFO     | pilot state: finished 
[2025-11-20 07:47:09] 2025-11-20 12:46:37,549 | INFO     | transexitcode: 0
[2025-11-20 07:47:09] 2025-11-20 12:46:37,549 | INFO     | exeerrorcode: 0
[2025-11-20 07:47:09] 2025-11-20 12:46:37,549 | INFO     | exeerrordiag: 
[2025-11-20 07:47:09] 2025-11-20 12:46:37,549 | INFO     | exitcode: 0
[2025-11-20 07:47:09] 2025-11-20 12:46:37,549 | INFO     | exitmsg: OK
[2025-11-20 07:47:09] 2025-11-20 12:46:37,550 | INFO     | cpuconsumptiontime: 341938 s
[2025-11-20 07:47:09] 2025-11-20 12:46:37,550 | INFO     | nevents: 1000
[2025-11-20 07:47:09] 2025-11-20 12:46:37,550 | INFO     | neventsw: 0
[2025-11-20 07:47:09] 2025-11-20 12:46:37,550 | INFO     | pid: 11195
[2025-11-20 07:47:09] 2025-11-20 12:46:37,550 | INFO     | pgrp: 11195
[2025-11-20 07:47:09] 2025-11-20 12:46:37,550 | INFO     | corecount: 8
[2025-11-20 07:47:09] 2025-11-20 12:46:37,551 | INFO     | event service: False
[2025-11-20 07:47:09] 2025-11-20 12:46:37,551 | INFO     | sizes: {0: 2297029, 1: 2297228, 7: 2297490, 12: 2297518, 44191: 2343182, 44192: 2343181, 44197: 2352415, 44204: 2352605}
[2025-11-20 07:47:09] 2025-11-20 12:46:37,551 | INFO     | --------------------------------------------------
[2025-11-20 07:47:09] 2025-11-20 12:46:37,551 | INFO     | 
[2025-11-20 07:47:09] 2025-11-20 12:46:37,551 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 07:47:09] 2025-11-20 12:46:37,579 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,580 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,580 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,580 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,580 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,580 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,581 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,581 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,581 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,581 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,581 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,582 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,582 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,582 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,582 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,582 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,582 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,583 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,583 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,583 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 07:47:09] 2025-11-20 12:46:37,583 | INFO     | job 6891571627 has completed (purged errors)
[2025-11-20 07:47:09] 2025-11-20 12:46:37,584 | INFO     | overall cleanup function is called
[2025-11-20 07:47:09] 2025-11-20 12:46:38,599 | INFO     | --- collectZombieJob: --- 10, [11195]
[2025-11-20 07:47:09] 2025-11-20 12:46:38,599 | INFO     | zombie collector waiting for pid 11195
[2025-11-20 07:47:09] 2025-11-20 12:46:38,600 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 07:47:09] 2025-11-20 12:46:38,600 | INFO     | collected zombie processes
[2025-11-20 07:47:09] 2025-11-20 12:46:38,600 | INFO     | will attempt to kill all subprocesses of pid=11195
[2025-11-20 07:47:09] 2025-11-20 12:46:38,688 | INFO     | process IDs to be killed: [11195] (in reverse order)
[2025-11-20 07:47:09] 2025-11-20 12:46:38,749 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 07:47:09] 2025-11-20 12:46:38,749 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 07:47:09] 2025-11-20 12:46:38,754 | INFO     | did not find any defunct processes belonging to 11195
[2025-11-20 07:47:09] 2025-11-20 12:46:38,757 | INFO     | did not find any defunct processes belonging to 11195
[2025-11-20 07:47:09] 2025-11-20 12:46:38,760 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 07:47:09] 2025-11-20 12:46:38,760 | INFO     | ready for new job
[2025-11-20 07:47:09] 2025-11-20 12:46:38,760 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 07:47:09] 2025-11-20 12:46:38,764 | INFO     | ***************************************
[2025-11-20 07:47:09] 2025-11-20 12:46:38,764 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 07:47:09] 2025-11-20 12:46:38,764 | INFO     | ***************************************
[2025-11-20 07:47:09] 2025-11-20 12:46:38,764 | INFO     | 
[2025-11-20 07:47:09] 2025-11-20 12:46:38,765 | INFO     | architecture information:
[2025-11-20 07:47:09] 2025-11-20 12:46:38,766 | INFO     | executing command: cat /etc/os-release
[2025-11-20 07:47:09] 2025-11-20 12:46:38,785 | INFO     | cat /etc/os-release:
[2025-11-20 07:47:09] NAME="CentOS Linux"
[2025-11-20 07:47:09] VERSION="7 (Core)"
[2025-11-20 07:47:09] ID="centos"
[2025-11-20 07:47:09] ID_LIKE="rhel fedora"
[2025-11-20 07:47:09] VERSION_ID="7"
[2025-11-20 07:47:09] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 07:47:09] ANSI_COLOR="0;31"
[2025-11-20 07:47:09] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 07:47:09] HOME_URL="https://www.centos.org/"
[2025-11-20 07:47:09] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 07:47:09] 
[2025-11-20 07:47:09] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 07:47:09] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 07:47:09] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 07:47:09] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 07:47:09] 
[2025-11-20 07:47:09] 2025-11-20 12:46:38,785 | INFO     | ***************************************
[2025-11-20 07:47:09] 2025-11-20 12:46:39,288 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 07:47:09] 2025-11-20 12:46:39,309 | INFO     | sufficient remaining disk space (17042505728 B)
[2025-11-20 07:47:09] 2025-11-20 12:46:39,309 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 07:47:09] 2025-11-20 12:46:39,310 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 07:47:09] 2025-11-20 12:46:39,310 | INFO     | update_server=False
[2025-11-20 07:47:09] 2025-11-20 12:46:39,310 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 07:47:09] 2025-11-20 12:46:39,310 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 07:47:09] 2025-11-20 12:46:39,311 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:47:09] 2025-11-20 12:46:39,564 | INFO     | all data control threads have been joined
[2025-11-20 07:47:09] 2025-11-20 12:46:40,178 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:47:09] 2025-11-20 12:46:40,179 | INFO     | aborting loop
[2025-11-20 07:47:09] 2025-11-20 12:46:40,316 | INFO     | [job] retrieve thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:40,317 | INFO     | [job] queue monitor thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:40,517 | INFO     | all payload control threads have been joined
[2025-11-20 07:47:09] 2025-11-20 12:46:40,569 | INFO     | [data] control thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:40,584 | INFO     | [payload] failed_post thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:40,794 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:40,981 | INFO     | all job control threads have been joined
[2025-11-20 07:47:09] 2025-11-20 12:46:40,983 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,184 | INFO     | [job] job monitor thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,233 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 07:47:09] 2025-11-20 12:46:41,282 | INFO     | [payload] validate_post thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,317 | INFO     | [data] copytool_out thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,437 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,522 | INFO     | [payload] control thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,616 | INFO     | [job] validate thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,667 | INFO     | [data] copytool_in thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,671 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:41,986 | INFO     | [job] control thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:45,234 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 07:47:09] 2025-11-20 12:46:49,794 | INFO     | [monitor] cgroup control has ended
[2025-11-20 07:47:09] 2025-11-20 12:46:49,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139646705362752)>', '<ExcThread(monitor, started 139645794891520)>']
[2025-11-20 07:47:09] 2025-11-20 12:46:54,841 | INFO     | all workflow threads have been joined
[2025-11-20 07:47:09] 2025-11-20 12:46:54,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 07:47:09] 2025-11-20 12:46:54,842 | INFO     | traces error code: 0
[2025-11-20 07:47:09] 2025-11-20 12:46:54,842 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 07:47:09] 2025-11-20 12:47:09,223 | INFO     | PID=4590 has CPU usage=7.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -
[2025-11-20 07:47:09] 2025-11-20 12:47:09,223 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 07:47:09] 2025-11-20 12:47:09,223 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 07:47:09] 2025-11-20 12:47:09,224 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 07:47:09] 2025-11-20 12:47:09,224 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 07:47:09] 2025-11-20 12:47:09,224 | INFO     | [monitor] control thread has ended
[2025-11-20 07:47:09] 2025-11-20 12:47:09,370 [wrapper] ==== pilot stdout END ====
[2025-11-20 07:47:09] 2025-11-20 12:47:09,375 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 07:47:09] 2025-11-20 12:47:09,380 [wrapper] pilotpid: 4590
[2025-11-20 07:47:09] 2025-11-20 12:47:09,385 [wrapper] Pilot exit status: 0
[2025-11-20 07:47:09] 2025-11-20 12:47:09,403 [wrapper] pandaids: 6891571627 6891571627
[2025-11-20 07:47:09] 2025-11-20 12:47:09,447 [wrapper] cleanup supervisor_pilot  5788 4591
[2025-11-20 07:47:09] 2025-11-20 12:47:09,452 [wrapper] Test setup, not cleaning
[2025-11-20 07:47:09] 2025-11-20 12:47:09,457 [wrapper] apfmon messages muted
[2025-11-20 07:47:09] 2025-11-20 12:47:09,461 [wrapper] ==== wrapper stdout END ====
[2025-11-20 07:47:09] 2025-11-20 12:47:09,466 [wrapper] ==== wrapper stderr END ====
[2025-11-20 07:47:09]  *** Error codes and diagnostics ***
[2025-11-20 07:47:09]     "exeErrorCode": 0,
[2025-11-20 07:47:09]     "exeErrorDiag": "",
[2025-11-20 07:47:09]     "pilotErrorCode": 0,
[2025-11-20 07:47:09]     "pilotErrorDiag": "",
[2025-11-20 07:47:09]  *** Listing of results directory ***
[2025-11-20 07:47:09] total 1702716
[2025-11-20 07:47:09] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 10:54 queuedata.json
[2025-11-20 07:47:09] -rwx------ 1 boincer umatlas     36292 Nov 18 10:56 runpilot2-wrapper.sh
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas       100 Nov 19 14:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 07:47:09] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 14:24 run_atlas
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas       105 Nov 19 14:24 job.xml
[2025-11-20 07:47:09] -rw-r--r-- 3 boincer umatlas 409134933 Nov 19 14:24 EVNT.47493065._000291.pool.root.1
[2025-11-20 07:47:09] -rw-r--r-- 3 boincer umatlas 409134933 Nov 19 14:24 ATLAS.root_0
[2025-11-20 07:47:09] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 14:24 start_atlas.sh
[2025-11-20 07:47:09] drwxrwx--x 2 boincer umatlas      4096 Nov 19 14:24 shared
[2025-11-20 07:47:09] -rw-r--r-- 2 boincer umatlas    590100 Nov 19 14:24 input.tar.gz
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas         0 Nov 19 14:24 boinc_lockfile
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas      2773 Nov 19 19:29 pandaJob.out
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas    989451 Nov 19 19:29 agis_schedconf.cvmfs.json
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas       532 Nov 20 07:35 boinc_task_state.xml
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas      5912 Nov 20 07:45 init_data.xml
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas 905247925 Nov 20 07:45 HITS.47493068._002910.pool.root.1
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas        96 Nov 20 07:46 pilot_heartbeat.json
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas      1062 Nov 20 07:46 memory_monitor_summary.json
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas   1525063 Nov 20 07:46 agis_ddmendpoints.agis.ALL.json
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas   1975848 Nov 20 07:46 log.47493068._002910.job.log.tgz.1
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas      8671 Nov 20 07:46 heartbeat.json
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 07:46 boinc_mmap_file
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas        29 Nov 20 07:46 wrapper_checkpoint.txt
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas       744 Nov 20 07:47 pilotlog.txt
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas   6092122 Nov 20 07:47 log.47493068._002910.job.log.1
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas       353 Nov 20 07:47 output.list
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas       620 Nov 20 07:47 runtime_log
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas   8089600 Nov 20 07:47 result.tar.gz
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas      8789 Nov 20 07:47 runtime_log.err
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas       793 Nov 20 07:47 8fYNDmVFdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOiFKDmDIozom.diag
[2025-11-20 07:47:09] -rw-r--r-- 1 boincer umatlas     23476 Nov 20 07:47 stderr.txt
[2025-11-20 07:47:09] HITS file was successfully produced:
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas 905247925 Nov 20 07:45 shared/HITS.pool.root.1
[2025-11-20 07:47:09]  *** Contents of shared directory: ***
[2025-11-20 07:47:09] total 1292084
[2025-11-20 07:47:09] -rw-r--r-- 3 boincer umatlas 409134933 Nov 19 14:24 ATLAS.root_0
[2025-11-20 07:47:09] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 14:24 start_atlas.sh
[2025-11-20 07:47:09] -rw-r--r-- 2 boincer umatlas    590100 Nov 19 14:24 input.tar.gz
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas 905247925 Nov 20 07:45 HITS.pool.root.1
[2025-11-20 07:47:09] -rw------- 1 boincer umatlas   8089600 Nov 20 07:47 result.tar.gz
07:47:11 (304): run_atlas exited; CPU time 337934.550964
07:47:11 (304): called boinc_finish(0)

</stderr_txt>
]]>

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