Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
05:23:26 (2078160): wrapper (7.7.26015): starting
05:23:26 (2078160): wrapper: running run_atlas (--nthreads 12)
[2025-11-23 05:23:26] Arguments: --nthreads 12
[2025-11-23 05:23:26] Threads: 12
[2025-11-23 05:23:26] Checking for CVMFS
[2025-11-23 05:23:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-23 05:23:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-23 05:23:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-23 05:23:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-23 05:23:28] 2.13.0.0 2291514 6226 163272 153198 1 85 3953930 4096000 14379 130560 0 37327611 99.980 881552 589 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-23 05:23:28] CVMFS is ok
[2025-11-23 05:23:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-23 05:23:28] Checking for apptainer binary...
[2025-11-23 05:23:29] apptainer is not installed, using version from CVMFS
[2025-11-23 05:23:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-23 05:24:02] epyc7v12
[2025-11-23 05:24:02] apptainer works
[2025-11-23 05:24:02] Set ATHENA_PROC_NUMBER=12
[2025-11-23 05:24:02] Set ATHENA_CORE_NUMBER=12
[2025-11-23 05:24:02] Starting ATLAS job with PandaID=6891570081
[2025-11-23 05:24:02] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 15:04:17]  *** The last 200 lines of the pilot log: ***
[2025-11-23 15:04:17] 2025-11-23 15:03:06,391 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 15:04:17] 2025-11-23 15:03:06,707 | INFO     | time since job start (34437s) is within the limit (172800.0s)
[2025-11-23 15:04:17] 2025-11-23 15:03:08,715 | INFO     | time since job start (34439s) is within the limit (172800.0s)
[2025-11-23 15:04:17] 2025-11-23 15:03:08,901 | INFO     | monitor loop #2205: job 0:6891570081 is in state 'finished'
[2025-11-23 15:04:17] 2025-11-23 15:03:08,901 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 15:04:17] 2025-11-23 15:03:10,727 | INFO     | time since job start (34441s) is within the limit (172800.0s)
[2025-11-23 15:04:17] 2025-11-23 15:03:11,411 | INFO     | monitor loop #2206: job 0:6891570081 is in state 'finished'
[2025-11-23 15:04:17] 2025-11-23 15:03:11,411 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 15:04:17] 2025-11-23 15:03:13,131 | INFO     | PID=2092020 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 15:04:17] 2025-11-23 15:03:13,132 | INFO     | .. there are 16 such processes running
[2025-11-23 15:04:17] 2025-11-23 15:03:13,931 | INFO     | monitor loop #2207: job 0:6891570081 is in state 'finished'
[2025-11-23 15:04:17] 2025-11-23 15:03:13,931 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 15:04:17] 2025-11-23 15:03:14,135 | INFO     | time since job start (34445s) is within the limit (172800.0s)
[2025-11-23 15:04:17] 2025-11-23 15:03:16,143 | INFO     | time since job start (34447s) is within the limit (172800.0s)
[2025-11-23 15:04:17] 2025-11-23 15:03:16,443 | INFO     | monitor loop #2208: job 0:6891570081 is in state 'finished'
[2025-11-23 15:04:17] 2025-11-23 15:03:16,443 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-23 15:04:17] 2025-11-23 15:03:17,028 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-23 15:04:17] 2025-11-23 15:03:17,054 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2395.5797656250006
[2025-11-23 15:04:17] 2025-11-23 15:03:17,084 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/0/PanDA_Pilot-6891570081/memory_monitor_summary.json (trf name=prmon)
[2025-11-23 15:04:17] 2025-11-23 15:03:17,084 | INFO     | extracted standard info from prmon json
[2025-11-23 15:04:17] 2025-11-23 15:03:17,084 | INFO     | extracted standard memory fields from prmon json
[2025-11-23 15:04:17] 2025-11-23 15:03:17,084 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-23 15:04:17] 2025-11-23 15:03:17,095 | INFO     | fitting pss+swap vs Time
[2025-11-23 15:04:17] 2025-11-23 15:03:17,095 | INFO     | sum of square deviations: 52154535054.99783
[2025-11-23 15:04:17] 2025-11-23 15:03:17,105 | INFO     | sum of deviations: 474194106019.37164
[2025-11-23 15:04:17] 2025-11-23 15:03:17,105 | INFO     | mean x: 1763893237.914855
[2025-11-23 15:04:17] 2025-11-23 15:03:17,105 | INFO     | mean y: 3134758.454710145
[2025-11-23 15:04:17] 2025-11-23 15:03:17,105 | INFO     | intersect: -16034354142.263557
[2025-11-23 15:04:17] 2025-11-23 15:03:17,106 | INFO     | chi2: 51.693004843708465
[2025-11-23 15:04:17] 2025-11-23 15:03:17,107 | INFO     | sum of square deviations: 50750319009.89769
[2025-11-23 15:04:17] 2025-11-23 15:03:17,115 | INFO     | sum of deviations: 688697066137.7247
[2025-11-23 15:04:17] 2025-11-23 15:03:17,115 | INFO     | mean x: 1763893085.427788
[2025-11-23 15:04:17] 2025-11-23 15:03:17,115 | INFO     | mean y: 3158043.689213894
[2025-11-23 15:04:17] 2025-11-23 15:03:17,115 | INFO     | intersect: -23933400713.26796
[2025-11-23 15:04:17] 2025-11-23 15:03:17,116 | INFO     | chi2: 47.35384460682996
[2025-11-23 15:04:17] 2025-11-23 15:03:17,116 | INFO     | current chi2=47.35384460682996 (change=8.394095584108076 %)
[2025-11-23 15:04:17] 2025-11-23 15:03:17,116 | INFO     | right removable region: 546
[2025-11-23 15:04:17] 2025-11-23 15:03:17,117 | INFO     | sum of square deviations: 50749842599.89766
[2025-11-23 15:04:17] 2025-11-23 15:03:17,125 | INFO     | sum of deviations: 211133973672.13644
[2025-11-23 15:04:17] 2025-11-23 15:03:17,131 | INFO     | mean x: 1763893390.427788
[2025-11-23 15:04:17] 2025-11-23 15:03:17,131 | INFO     | mean y: 3163320.319926874
[2025-11-23 15:04:17] 2025-11-23 15:03:17,131 | INFO     | intersect: -7335141619.6797695
[2025-11-23 15:04:17] 2025-11-23 15:03:17,132 | INFO     | chi2: 46.20637610572139
[2025-11-23 15:04:17] 2025-11-23 15:03:17,132 | INFO     | current chi2=46.20637610572139 (change=10.613870783050157 %)
[2025-11-23 15:04:17] 2025-11-23 15:03:17,132 | INFO     | left removable region: 10
[2025-11-23 15:04:17] 2025-11-23 15:03:17,133 | INFO     | sum of square deviations: 47749320470.01309
[2025-11-23 15:04:17] 2025-11-23 15:03:17,153 | INFO     | sum of deviations: 221188958239.30542
[2025-11-23 15:04:17] 2025-11-23 15:03:17,153 | INFO     | mean x: 1763893359.9570897
[2025-11-23 15:04:17] 2025-11-23 15:03:17,154 | INFO     | mean y: 3220246.7089552237
[2025-11-23 15:04:17] 2025-11-23 15:03:17,154 | INFO     | intersect: -8167654875.569615
[2025-11-23 15:04:17] 2025-11-23 15:03:17,154 | INFO     | chi2: 36.12599449167401
[2025-11-23 15:04:17] 2025-11-23 15:03:17,159 | INFO     | current memory leak: 4.63 B/s (using 536 data points, chi2=36.13)
[2025-11-23 15:04:17] 2025-11-23 15:03:17,160 | INFO     | could have reported an average CPU frequency of 2395 MHz (21 samples)
[2025-11-23 15:04:17] 2025-11-23 15:03:17,160 | INFO     | ..............................
[2025-11-23 15:04:17] 2025-11-23 15:03:17,160 | INFO     | . Timing measurements:
[2025-11-23 15:04:17] 2025-11-23 15:03:17,160 | INFO     | . get job = 0 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,161 | INFO     | . initial setup = 9 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,161 | INFO     | . payload setup = 207 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,161 | INFO     | . stage-in = 0 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,161 | INFO     | . payload execution = 33806 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,161 | INFO     | . stage-out = 7 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,161 | INFO     | . log creation = 3 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,161 | INFO     | ..............................
[2025-11-23 15:04:17] 2025-11-23 15:03:17,519 | INFO     | 
[2025-11-23 15:04:17] 2025-11-23 15:03:17,519 | INFO     | job summary report
[2025-11-23 15:04:17] 2025-11-23 15:03:17,519 | INFO     | --------------------------------------------------
[2025-11-23 15:04:17] 2025-11-23 15:03:17,519 | INFO     | PanDA job id: 6891570081
[2025-11-23 15:04:17] 2025-11-23 15:03:17,519 | INFO     | task id: 47493068
[2025-11-23 15:04:17] 2025-11-23 15:03:17,519 | INFO     | errors: (none)
[2025-11-23 15:04:17] 2025-11-23 15:03:17,519 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | pilot state: finished 
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | transexitcode: 0
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | exeerrorcode: 0
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | exeerrordiag: 
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | exitcode: 0
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | exitmsg: OK
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | cpuconsumptiontime: 258292 s
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | nevents: 1000
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | neventsw: 0
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | pid: 2119212
[2025-11-23 15:04:17] 2025-11-23 15:03:17,520 | INFO     | pgrp: 2119212
[2025-11-23 15:04:17] 2025-11-23 15:03:17,521 | INFO     | corecount: 12
[2025-11-23 15:04:17] 2025-11-23 15:03:17,521 | INFO     | event service: False
[2025-11-23 15:04:17] 2025-11-23 15:03:17,521 | INFO     | sizes: {0: 2297968, 1: 2298676, 2: 2298875, 13: 2298875, 24: 2298931, 34: 2298959, 45: 2299115, 56: 2299143, 67: 2299171, 78: 2299199, 88: 2299255, 99: 2299563, 11
[2025-11-23 15:04:17] 2025-11-23 15:03:17,521 | INFO     | --------------------------------------------------
[2025-11-23 15:04:17] 2025-11-23 15:03:17,521 | INFO     | 
[2025-11-23 15:04:17] 2025-11-23 15:03:17,521 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/0
[2025-11-23 15:04:17] 2025-11-23 15:03:18,175 | INFO     | time since job start (34449s) is within the limit (172800.0s)
[2025-11-23 15:04:17] 2025-11-23 15:03:18,360 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,360 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,360 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,360 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,360 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,360 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,361 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,362 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-23 15:04:17] 2025-11-23 15:03:18,362 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,362 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-23 15:04:17] 2025-11-23 15:03:18,362 | INFO     | job 6891570081 has completed (purged errors)
[2025-11-23 15:04:17] 2025-11-23 15:03:18,362 | INFO     | overall cleanup function is called
[2025-11-23 15:04:17] 2025-11-23 15:03:19,419 | INFO     | --- collectZombieJob: --- 10, [2119212]
[2025-11-23 15:04:17] 2025-11-23 15:03:19,419 | INFO     | zombie collector waiting for pid 2119212
[2025-11-23 15:04:17] 2025-11-23 15:03:19,419 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 15:04:17] 2025-11-23 15:03:19,419 | INFO     | collected zombie processes
[2025-11-23 15:04:17] 2025-11-23 15:03:19,419 | INFO     | will attempt to kill all subprocesses of pid=2119212
[2025-11-23 15:04:17] 2025-11-23 15:03:20,693 | INFO     | process IDs to be killed: [2119212] (in reverse order)
[2025-11-23 15:04:17] 2025-11-23 15:03:25,956 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 15:04:17] 2025-11-23 15:03:25,956 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 15:04:17] 2025-11-23 15:03:25,990 | INFO     | did not find any defunct processes belonging to 2119212
[2025-11-23 15:04:17] 2025-11-23 15:03:26,030 | INFO     | did not find any defunct processes belonging to 2119212
[2025-11-23 15:04:17] 2025-11-23 15:03:26,099 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 15:04:17] 2025-11-23 15:03:26,099 | INFO     | ready for new job
[2025-11-23 15:04:17] 2025-11-23 15:03:26,099 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 15:04:17] 2025-11-23 15:03:26,112 | INFO     | ***************************************
[2025-11-23 15:04:17] 2025-11-23 15:03:26,112 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 15:04:17] 2025-11-23 15:03:26,112 | INFO     | ***************************************
[2025-11-23 15:04:17] 2025-11-23 15:03:26,112 | INFO     | 
[2025-11-23 15:04:17] 2025-11-23 15:03:26,148 | INFO     | architecture information:
[2025-11-23 15:04:17] 2025-11-23 15:03:26,183 | INFO     | executing command: cat /etc/os-release
[2025-11-23 15:04:17] 2025-11-23 15:03:26,831 | INFO     | cat /etc/os-release:
[2025-11-23 15:04:17] NAME="CentOS Linux"
[2025-11-23 15:04:17] VERSION="7 (Core)"
[2025-11-23 15:04:17] ID="centos"
[2025-11-23 15:04:17] ID_LIKE="rhel fedora"
[2025-11-23 15:04:17] VERSION_ID="7"
[2025-11-23 15:04:17] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 15:04:17] ANSI_COLOR="0;31"
[2025-11-23 15:04:17] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 15:04:17] HOME_URL="https://www.centos.org/"
[2025-11-23 15:04:17] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 15:04:17] 
[2025-11-23 15:04:17] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 15:04:17] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 15:04:17] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 15:04:17] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 15:04:17] 
[2025-11-23 15:04:17] 2025-11-23 15:03:26,832 | INFO     | ***************************************
[2025-11-23 15:04:17] 2025-11-23 15:03:27,335 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/0
[2025-11-23 15:04:17] 2025-11-23 15:03:27,784 | INFO     | sufficient remaining disk space (327483916288 B)
[2025-11-23 15:04:17] 2025-11-23 15:03:27,784 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 15:04:17] 2025-11-23 15:03:27,784 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 15:04:17] 2025-11-23 15:03:27,785 | INFO     | update_server=False
[2025-11-23 15:04:17] 2025-11-23 15:03:27,785 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 15:04:17] 2025-11-23 15:03:27,787 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:04:17] 2025-11-23 15:03:27,787 | INFO     | aborting loop
[2025-11-23 15:04:17] 2025-11-23 15:03:28,007 | INFO     | all payload control threads have been joined
[2025-11-23 15:04:17] 2025-11-23 15:03:28,483 | INFO     | all data control threads have been joined
[2025-11-23 15:04:17] 2025-11-23 15:03:28,515 | INFO     | all job control threads have been joined
[2025-11-23 15:04:17] 2025-11-23 15:03:28,787 | INFO     | [job] retrieve thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:28,791 | INFO     | [job] job monitor thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:28,943 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 15:04:17] 2025-11-23 15:03:29,011 | INFO     | [payload] control thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,091 | INFO     | [payload] failed_post thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,467 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,491 | INFO     | [data] control thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,519 | INFO     | [job] control thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,531 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,531 | INFO     | [job] validate thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,895 | INFO     | [data] copytool_in thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:29,967 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 15:04:17] 2025-11-23 15:03:30,027 | INFO     | [payload] validate_post thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:30,259 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:30,271 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:30,471 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 15:04:17] 2025-11-23 15:03:30,951 | INFO     | [data] copytool_out thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:31,479 | INFO     | [job] queue monitor thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:33,987 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 15:04:17] 2025-11-23 15:03:52,664 | INFO     | PID=2092020 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 15:04:17] 2025-11-23 15:03:52,664 | INFO     | .. there are 16 such processes running
[2025-11-23 15:04:17] 2025-11-23 15:03:52,664 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 15:04:17] 2025-11-23 15:03:52,665 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 15:04:17] 2025-11-23 15:03:52,665 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 15:04:17] 2025-11-23 15:04:06,739 | INFO     | [monitor] cgroup control has ended
[2025-11-23 15:04:17] 2025-11-23 15:04:07,147 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140637202667328)>', '<ExcThread(monitor, started 140636606945024)>']
[2025-11-23 15:04:17] 2025-11-23 15:04:07,739 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 15:04:17] 2025-11-23 15:04:07,739 | INFO     | [monitor] control thread has ended
[2025-11-23 15:04:17] 2025-11-23 15:04:12,175 | INFO     | all workflow threads have been joined
[2025-11-23 15:04:17] 2025-11-23 15:04:12,175 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 15:04:17] 2025-11-23 15:04:12,175 | INFO     | traces error code: 0
[2025-11-23 15:04:17] 2025-11-23 15:04:12,175 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 15:04:17] 2025-11-23 15:04:12,439 [wrapper] ==== pilot stdout END ====
[2025-11-23 15:04:17] 2025-11-23 15:04:12,547 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 15:04:17] 2025-11-23 15:04:12,655 [wrapper] pilotpid: 2092020
[2025-11-23 15:04:17] 2025-11-23 15:04:12,799 [wrapper] Pilot exit status: 0
[2025-11-23 15:04:17] 2025-11-23 15:04:13,291 [wrapper] pandaids: 6891570081
[2025-11-23 15:04:17] 2025-11-23 15:04:14,123 [wrapper] cleanup supervisor_pilot 3111926 2092021
[2025-11-23 15:04:17] 2025-11-23 15:04:14,194 [wrapper] Test setup, not cleaning
[2025-11-23 15:04:17] 2025-11-23 15:04:14,307 [wrapper] apfmon messages muted
[2025-11-23 15:04:17] 2025-11-23 15:04:14,439 [wrapper] ==== wrapper stdout END ====
[2025-11-23 15:04:17] 2025-11-23 15:04:14,539 [wrapper] ==== wrapper stderr END ====
[2025-11-23 15:04:17]  *** Error codes and diagnostics ***
[2025-11-23 15:04:17]     "exeErrorCode": 0,
[2025-11-23 15:04:17]     "exeErrorDiag": "",
[2025-11-23 15:04:17]     "pilotErrorCode": 0,
[2025-11-23 15:04:17]     "pilotErrorDiag": "",
[2025-11-23 15:04:17]  *** Listing of results directory ***
[2025-11-23 15:04:17] total 1307504
[2025-11-23 15:04:17] -rw-r--r-- 1 boinc boinc    576529 Nov 18 15:15 pilot3.tar.gz
[2025-11-23 15:04:17] -rw-r--r-- 1 boinc boinc      5112 Nov 18 15:35 queuedata.json
[2025-11-23 15:04:17] -rwx------ 1 boinc boinc     36292 Nov 18 15:38 runpilot2-wrapper.sh
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc       100 Nov 23 05:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 15:04:17] -rwxr-xr-x 1 boinc boinc      7986 Nov 23 05:23 run_atlas
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc       105 Nov 23 05:23 job.xml
[2025-11-23 15:04:17] -rw-r--r-- 2 boinc boinc     15120 Nov 23 05:23 start_atlas.sh
[2025-11-23 15:04:17] drwxrwx--x 2 boinc boinc      4096 Nov 23 05:23 shared
[2025-11-23 15:04:17] -rw-r--r-- 2 boinc boinc    590102 Nov 23 05:23 input.tar.gz
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc      7041 Nov 23 05:23 init_data.xml
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc         0 Nov 23 05:23 boinc_setup_complete
[2025-11-23 15:04:17] -rw-r--r-- 2 boinc boinc 409214586 Nov 23 05:23 EVNT.47493065._000229.pool.root.1
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc         0 Nov 23 05:23 boinc_lockfile
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc      2773 Nov 23 05:24 pandaJob.out
[2025-11-23 15:04:17] -rw------- 1 boinc boinc    989784 Nov 23 05:29 agis_schedconf.cvmfs.json
[2025-11-23 15:04:17] drwx------ 5 boinc boinc      4096 Nov 23 05:29 pilot3
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc       533 Nov 23 14:23 boinc_task_state.xml
[2025-11-23 15:04:17] -rw------- 1 boinc boinc 912126057 Nov 23 14:59 HITS.47493068._002285.pool.root.1
[2025-11-23 15:04:17] -rw------- 1 boinc boinc      1038 Nov 23 15:00 memory_monitor_summary.json
[2025-11-23 15:04:17] -rw------- 1 boinc boinc   1526164 Nov 23 15:00 agis_ddmendpoints.agis.ALL.json
[2025-11-23 15:04:17] -rw------- 1 boinc boinc   2247851 Nov 23 15:00 log.47493068._002285.job.log.tgz.1
[2025-11-23 15:04:17] -rw------- 1 boinc boinc        95 Nov 23 15:02 pilot_heartbeat.json
[2025-11-23 15:04:17] -rw------- 1 boinc boinc      8560 Nov 23 15:03 heartbeat.json
[2025-11-23 15:04:17] -rw------- 1 boinc boinc      4848 Nov 23 15:04 pilotlog.txt
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc        29 Nov 23 15:04 wrapper_checkpoint.txt
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc      8192 Nov 23 15:04 boinc_mmap_file
[2025-11-23 15:04:17] -rw------- 1 boinc boinc   4560271 Nov 23 15:04 log.47493068._002285.job.log.1
[2025-11-23 15:04:17] -rw------- 1 boinc boinc       353 Nov 23 15:04 output.list
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc       620 Nov 23 15:04 runtime_log
[2025-11-23 15:04:17] -rw------- 1 boinc boinc   6830080 Nov 23 15:04 result.tar.gz
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc      9008 Nov 23 15:04 runtime_log.err
[2025-11-23 15:04:17] -rw------- 1 boinc boinc       660 Nov 23 15:04 qtpLDmcxcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqbFKDmVJMLsn.diag
[2025-11-23 15:04:17] -rw-rw-r-- 1 boinc boinc     21688 Nov 23 15:04 stderr.txt
[2025-11-23 15:04:17] HITS file was successfully produced:
[2025-11-23 15:04:17] -rw------- 1 boinc boinc 912126057 Nov 23 14:59 shared/HITS.pool.root.1
[2025-11-23 15:04:17]  *** Contents of shared directory: ***
[2025-11-23 15:04:17] total 1297652
[2025-11-23 15:04:17] -rw-r--r-- 2 boinc boinc     15120 Nov 23 05:23 start_atlas.sh
[2025-11-23 15:04:17] -rw-r--r-- 2 boinc boinc    590102 Nov 23 05:23 input.tar.gz
[2025-11-23 15:04:17] -rw-r--r-- 2 boinc boinc 409214586 Nov 23 05:23 ATLAS.root_0
[2025-11-23 15:04:17] -rw------- 1 boinc boinc 912126057 Nov 23 14:59 HITS.pool.root.1
[2025-11-23 15:04:17] -rw------- 1 boinc boinc   6830080 Nov 23 15:04 result.tar.gz
15:04:19 (2078160): run_atlas exited; CPU time 259371.356559
15:04:19 (2078160): called boinc_finish(0)

</stderr_txt>
]]>

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