Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
15:21:13 (565109): wrapper (7.7.26015): starting
15:21:13 (565109): wrapper: running run_atlas (--nthreads 3)
[2025-11-21 15:21:13] Arguments: --nthreads 3
[2025-11-21 15:21:13] Threads: 3
[2025-11-21 15:21:13] Checking for CVMFS
[2025-11-21 15:21:14] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 15:21:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 15:21:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 15:21:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 15:21:14] 2.9.2.0 4188978 4258 82764 153128 0 81 33820467 36864000 0 130560 0 1586266 99.679 420702 6376 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 15:21:14] CVMFS is ok
[2025-11-21 15:21:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 15:21:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 15:21:14] Further information can be found at the LHC@home message board.
[2025-11-21 15:21:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 15:21:14] Checking for apptainer binary...
[2025-11-21 15:21:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 15:21:14] Running /usr/bin/apptainer --version
[2025-11-21 15:21:14] apptainer version 1.4.1-1.1
[2025-11-21 15:21:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 15:21:14] atlasA228b
[2025-11-21 15:21:14] apptainer works
[2025-11-21 15:21:14] Set ATHENA_PROC_NUMBER=3
[2025-11-21 15:21:14] Set ATHENA_CORE_NUMBER=3
[2025-11-21 15:21:14] Starting ATLAS job with PandaID=6891567942
[2025-11-21 15:21:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 23:21:59]  *** The last 200 lines of the pilot log: ***
[2025-11-21 23:21:59] 2025-11-21 22:21:20,537 | INFO     | collected zombie processes
[2025-11-21 23:21:59] 2025-11-21 22:21:20,537 | INFO     | will attempt to kill all subprocesses of pid=575294
[2025-11-21 23:21:59] 2025-11-21 22:21:20,583 | INFO     | process IDs to be killed: [575294] (in reverse order)
[2025-11-21 23:21:59] 2025-11-21 22:21:20,610 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 23:21:59] 2025-11-21 22:21:20,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 23:21:59] 2025-11-21 22:21:20,611 | INFO     | did not find any defunct processes belonging to 575294
[2025-11-21 23:21:59] 2025-11-21 22:21:20,612 | INFO     | did not find any defunct processes belonging to 575294
[2025-11-21 23:21:59] 2025-11-21 22:21:20,613 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 23:21:59] 2025-11-21 22:21:20,613 | INFO     | ready for new job
[2025-11-21 23:21:59] 2025-11-21 22:21:20,613 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 23:21:59] 2025-11-21 22:21:20,614 | INFO     | ***************************************
[2025-11-21 23:21:59] 2025-11-21 22:21:20,614 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 23:21:59] 2025-11-21 22:21:20,614 | INFO     | ***************************************
[2025-11-21 23:21:59] 2025-11-21 22:21:20,614 | INFO     | 
[2025-11-21 23:21:59] 2025-11-21 22:21:20,615 | INFO     | architecture information:
[2025-11-21 23:21:59] 2025-11-21 22:21:20,615 | INFO     | executing command: cat /etc/os-release
[2025-11-21 23:21:59] 2025-11-21 22:21:20,624 | INFO     | cat /etc/os-release:
[2025-11-21 23:21:59] NAME="CentOS Linux"
[2025-11-21 23:21:59] VERSION="7 (Core)"
[2025-11-21 23:21:59] ID="centos"
[2025-11-21 23:21:59] ID_LIKE="rhel fedora"
[2025-11-21 23:21:59] VERSION_ID="7"
[2025-11-21 23:21:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 23:21:59] ANSI_COLOR="0;31"
[2025-11-21 23:21:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 23:21:59] HOME_URL="https://www.centos.org/"
[2025-11-21 23:21:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 23:21:59] 
[2025-11-21 23:21:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 23:21:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 23:21:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 23:21:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 23:21:59] 
[2025-11-21 23:21:59] 2025-11-21 22:21:20,624 | INFO     | ***************************************
[2025-11-21 23:21:59] 2025-11-21 22:21:21,128 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 23:21:59] 2025-11-21 22:21:21,142 | INFO     | sufficient remaining disk space (267744444416 B)
[2025-11-21 23:21:59] 2025-11-21 22:21:21,142 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 23:21:59] 2025-11-21 22:21:21,142 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 23:21:59] 2025-11-21 22:21:21,142 | INFO     | update_server=False
[2025-11-21 23:21:59] 2025-11-21 22:21:21,142 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 23:21:59] 2025-11-21 22:21:21,142 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 23:21:59] 2025-11-21 22:21:21,142 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:21:59] 2025-11-21 22:21:21,281 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 23:21:59] 2025-11-21 22:21:21,282 | INFO     | aborting loop
[2025-11-21 23:21:59] 2025-11-21 22:21:21,471 | INFO     | all payload control threads have been joined
[2025-11-21 23:21:59] 2025-11-21 22:21:21,759 | INFO     | all data control threads have been joined
[2025-11-21 23:21:59] 2025-11-21 22:21:21,879 | INFO     | all job control threads have been joined
[2025-11-21 23:21:59] 2025-11-21 22:21:22,089 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 23:21:59] 2025-11-21 22:21:22,148 | INFO     | [job] retrieve thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,148 | INFO     | [job] queue monitor thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,279 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,283 | INFO     | [job] job monitor thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,477 | INFO     | [payload] control thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,765 | INFO     | [data] control thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,803 | INFO     | [payload] failed_post thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,885 | INFO     | [job] control thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:22,998 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:23,409 | INFO     | [job] validate thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:23,409 | INFO     | [data] copytool_in thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:23,410 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:23,635 | INFO     | [payload] validate_post thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:24,096 | INFO     | [data] copytool_out thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:25,148 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:31,273 | INFO     | job.realtimelogging is not enabled
[2025-11-21 23:21:59] 2025-11-21 22:21:32,277 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 23:21:59] 2025-11-21 22:21:50,936 | INFO     | PID=568838 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-21 23:21:59] 2025-11-21 22:21:50,936 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 23:21:59] 2025-11-21 22:21:50,936 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 23:21:59] 2025-11-21 22:21:50,937 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 23:21:59] 2025-11-21 22:21:53,835 | INFO     | [monitor] cgroup control has ended
[2025-11-21 23:21:59] 2025-11-21 22:21:54,472 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140223021729600)>', '<ExcThread(monitor, started 140222025168640)>']
[2025-11-21 23:21:59] 2025-11-21 22:21:54,958 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 23:21:59] 2025-11-21 22:21:54,958 | INFO     | [monitor] control thread has ended
[2025-11-21 23:21:59] 2025-11-21 22:21:59,493 | INFO     | all workflow threads have been joined
[2025-11-21 23:21:59] 2025-11-21 22:21:59,493 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 23:21:59] 2025-11-21 22:21:59,493 | INFO     | traces error code: 0
[2025-11-21 23:21:59] 2025-11-21 22:21:59,494 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 23:21:59] 2025-11-21 22:21:59,545 [wrapper] ==== pilot stdout END ====
[2025-11-21 23:21:59] 2025-11-21 22:21:59,548 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 23:21:59] 2025-11-21 22:21:59,551 [wrapper] pilotpid: 568838
[2025-11-21 23:21:59] 2025-11-21 22:21:59,553 [wrapper] Pilot exit status: 0
[2025-11-21 23:21:59] 2025-11-21 22:21:59,561 [wrapper] pandaids: 6891567942
[2025-11-21 23:21:59] 2025-11-21 22:21:59,579 [wrapper] cleanup supervisor_pilot  628303 568839
[2025-11-21 23:21:59] 2025-11-21 22:21:59,581 [wrapper] Test setup, not cleaning
[2025-11-21 23:21:59] 2025-11-21 22:21:59,584 [wrapper] apfmon messages muted
[2025-11-21 23:21:59] 2025-11-21 22:21:59,586 [wrapper] ==== wrapper stdout END ====
[2025-11-21 23:21:59] 2025-11-21 22:21:59,589 [wrapper] ==== wrapper stderr END ====
[2025-11-21 23:21:59]  *** Error codes and diagnostics ***
[2025-11-21 23:21:59]     "exeErrorCode": 0,
[2025-11-21 23:21:59]     "exeErrorDiag": "",
[2025-11-21 23:21:59]     "pilotErrorCode": 0,
[2025-11-21 23:21:59]     "pilotErrorDiag": "",
[2025-11-21 23:21:59]  *** Listing of results directory ***
[2025-11-21 23:21:59] total 1328140
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:32 queuedata.json
[2025-11-21 23:21:59] -rwx------ 1 boinc boinc     36292 Nov 18 16:33 runpilot2-wrapper.sh
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc       100 Nov 21 15:21 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 23:21:59] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 15:21 run_atlas
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc       105 Nov 21 15:21 job.xml
[2025-11-21 23:21:59] -rw-r--r-- 2 boinc boinc 412061659 Nov 21 15:21 EVNT.47493065._000181.pool.root.1
[2025-11-21 23:21:59] -rw-r--r-- 2 boinc boinc    590108 Nov 21 15:21 input.tar.gz
[2025-11-21 23:21:59] -rw-r--r-- 2 boinc boinc     15120 Nov 21 15:21 start_atlas.sh
[2025-11-21 23:21:59] drwxrwx--x 2 boinc boinc      4096 Nov 21 15:21 shared
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc         0 Nov 21 15:21 boinc_setup_complete
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc      6449 Nov 21 15:21 init_data.xml
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc         0 Nov 21 15:21 boinc_lockfile
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc      2773 Nov 21 15:21 pandaJob.out
[2025-11-21 23:21:59] -rw------- 1 boinc boinc    989817 Nov 21 15:21 agis_schedconf.cvmfs.json
[2025-11-21 23:21:59] drwx------ 5 boinc boinc      4096 Nov 21 15:21 pilot3
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc       531 Nov 21 23:17 boinc_task_state.xml
[2025-11-21 23:21:59] -rw------- 1 boinc boinc 933594253 Nov 21 23:20 HITS.47493068._001805.pool.root.1
[2025-11-21 23:21:59] -rw------- 1 boinc boinc      1020 Nov 21 23:21 memory_monitor_summary.json
[2025-11-21 23:21:59] -rw------- 1 boinc boinc   1526164 Nov 21 23:21 agis_ddmendpoints.agis.ALL.json
[2025-11-21 23:21:59] -rw------- 1 boinc boinc   1169297 Nov 21 23:21 log.47493068._001805.job.log.tgz.1
[2025-11-21 23:21:59] -rw------- 1 boinc boinc      8567 Nov 21 23:21 heartbeat.json
[2025-11-21 23:21:59] -rw------- 1 boinc boinc        95 Nov 21 23:21 pilot_heartbeat.json
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc      8192 Nov 21 23:21 boinc_mmap_file
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc        28 Nov 21 23:21 wrapper_checkpoint.txt
[2025-11-21 23:21:59] -rw------- 1 boinc boinc      4823 Nov 21 23:21 pilotlog.txt
[2025-11-21 23:21:59] -rw------- 1 boinc boinc   4055404 Nov 21 23:21 log.47493068._001805.job.log.1
[2025-11-21 23:21:59] -rw------- 1 boinc boinc       353 Nov 21 23:21 output.list
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc       620 Nov 21 23:21 runtime_log
[2025-11-21 23:21:59] -rw------- 1 boinc boinc   5242880 Nov 21 23:21 result.tar.gz
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc      8798 Nov 21 23:21 runtime_log.err
[2025-11-21 23:21:59] -rw------- 1 boinc boinc       669 Nov 21 23:21 77KMDmYtcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmVKFKDmC67KWo.diag
[2025-11-21 23:21:59] -rw-r--r-- 1 boinc boinc     10595 Nov 21 23:21 stderr.txt
[2025-11-21 23:21:59] HITS file was successfully produced:
[2025-11-21 23:21:59] -rw------- 1 boinc boinc 933594253 Nov 21 23:20 shared/HITS.pool.root.1
[2025-11-21 23:21:59]  *** Contents of shared directory: ***
[2025-11-21 23:21:59] total 1319844
[2025-11-21 23:21:59] -rw-r--r-- 2 boinc boinc 412061659 Nov 21 15:21 ATLAS.root_0
[2025-11-21 23:21:59] -rw-r--r-- 2 boinc boinc    590108 Nov 21 15:21 input.tar.gz
[2025-11-21 23:21:59] -rw-r--r-- 2 boinc boinc     15120 Nov 21 15:21 start_atlas.sh
[2025-11-21 23:21:59] -rw------- 1 boinc boinc 933594253 Nov 21 23:20 HITS.pool.root.1
[2025-11-21 23:21:59] -rw------- 1 boinc boinc   5242880 Nov 21 23:21 result.tar.gz
23:22:01 (565109): run_atlas exited; CPU time 85078.021505
23:22:01 (565109): called boinc_finish(0)

</stderr_txt>
]]>

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