Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
22:24:01 (2883202): wrapper (7.7.26015): starting
22:24:01 (2883202): wrapper: running run_atlas (--nthreads 12)
[2025-11-21 22:24:01] Arguments: --nthreads 12
[2025-11-21 22:24:01] Threads: 12
[2025-11-21 22:24:01] Checking for CVMFS
[2025-11-21 22:24:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 22:24:03] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 22:24:03] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 22:24:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 22:24:05] 2.13.0.0 2291514 4367 161816 153145 0 89 3705826 4096000 13097 130560 0 26936835 99.972 811088 570 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.85.111:3128 1
[2025-11-21 22:24:05] CVMFS is ok
[2025-11-21 22:24:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 22:24:05] Checking for apptainer binary...
[2025-11-21 22:24:05] apptainer is not installed, using version from CVMFS
[2025-11-21 22:24:05] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 22:24:23] epyc7v12
[2025-11-21 22:24:23] apptainer works
[2025-11-21 22:24:23] Set ATHENA_PROC_NUMBER=12
[2025-11-21 22:24:23] Set ATHENA_CORE_NUMBER=12
[2025-11-21 22:24:23] Starting ATLAS job with PandaID=6891602254
[2025-11-21 22:24:23] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/opt/boinc/instance_homes/boinc_31418/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 08:18:51]  *** The last 200 lines of the pilot log: ***
[2025-11-22 08:18:51] 2025-11-22 08:17:48,527 | INFO     | PID=2897937 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 08:18:51] 2025-11-22 08:17:48,527 | INFO     | .. there are 15 such processes running
[2025-11-22 08:18:51] 2025-11-22 08:17:49,531 | INFO     | time since job start (35289s) is within the limit (172800.0s)
[2025-11-22 08:18:51] 2025-11-22 08:17:49,939 | INFO     | monitor loop #2236: job 0:6891602254 is in state 'finished'
[2025-11-22 08:18:51] 2025-11-22 08:17:49,939 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:18:51] 2025-11-22 08:17:51,543 | INFO     | time since job start (35291s) is within the limit (172800.0s)
[2025-11-22 08:18:51] 2025-11-22 08:17:52,449 | INFO     | monitor loop #2237: job 0:6891602254 is in state 'finished'
[2025-11-22 08:18:51] 2025-11-22 08:17:52,449 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:18:51] 2025-11-22 08:17:53,555 | INFO     | time since job start (35293s) is within the limit (172800.0s)
[2025-11-22 08:18:51] 2025-11-22 08:17:54,957 | INFO     | monitor loop #2238: job 0:6891602254 is in state 'finished'
[2025-11-22 08:18:51] 2025-11-22 08:17:54,957 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:18:51] 2025-11-22 08:17:55,567 | INFO     | time since job start (35295s) is within the limit (172800.0s)
[2025-11-22 08:18:51] 2025-11-22 08:17:57,467 | INFO     | monitor loop #2239: job 0:6891602254 is in state 'finished'
[2025-11-22 08:18:51] 2025-11-22 08:17:57,467 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 08:18:51] 2025-11-22 08:17:57,579 | INFO     | time since job start (35297s) is within the limit (172800.0s)
[2025-11-22 08:18:51] 2025-11-22 08:17:58,990 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 08:18:51] 2025-11-22 08:17:59,038 | INFO     | found 64 cores (64 cores per socket, 1 socket) HT, CPU MHz: 2392.6557421875004
[2025-11-22 08:18:51] 2025-11-22 08:17:59,070 | INFO     | using path: /opt/boinc/instance_homes/boinc_31418/slots/1/PanDA_Pilot-6891602254/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 08:18:51] 2025-11-22 08:17:59,071 | INFO     | extracted standard info from prmon json
[2025-11-22 08:18:51] 2025-11-22 08:17:59,071 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 08:18:51] 2025-11-22 08:17:59,071 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 08:18:51] 2025-11-22 08:17:59,082 | INFO     | fitting pss+swap vs Time
[2025-11-22 08:18:51] 2025-11-22 08:17:59,082 | INFO     | sum of square deviations: 56223845816.715515
[2025-11-22 08:18:51] 2025-11-22 08:17:59,091 | INFO     | sum of deviations: 401712922069.333
[2025-11-22 08:18:51] 2025-11-22 08:17:59,092 | INFO     | mean x: 1763782061.7332156
[2025-11-22 08:18:51] 2025-11-22 08:17:59,092 | INFO     | mean y: 3104689.0088339224
[2025-11-22 08:18:51] 2025-11-22 08:17:59,092 | INFO     | intersect: -12598915603.627808
[2025-11-22 08:18:51] 2025-11-22 08:17:59,093 | INFO     | chi2: 58.658309313071534
[2025-11-22 08:18:51] 2025-11-22 08:17:59,093 | INFO     | sum of square deviations: 54747128681.54368
[2025-11-22 08:18:51] 2025-11-22 08:17:59,102 | INFO     | sum of deviations: 616982697642.6426
[2025-11-22 08:18:51] 2025-11-22 08:17:59,102 | INFO     | mean x: 1763781909.2442067
[2025-11-22 08:18:51] 2025-11-22 08:17:59,102 | INFO     | mean y: 3126915.659536542
[2025-11-22 08:18:51] 2025-11-22 08:17:59,102 | INFO     | intersect: -19874133255.349987
[2025-11-22 08:18:51] 2025-11-22 08:17:59,103 | INFO     | chi2: 54.2282143450516
[2025-11-22 08:18:51] 2025-11-22 08:17:59,103 | INFO     | current chi2=54.2282143450516 (change=7.5523741135729 %)
[2025-11-22 08:18:51] 2025-11-22 08:17:59,103 | INFO     | right removable region: 560
[2025-11-22 08:18:51] 2025-11-22 08:17:59,104 | INFO     | sum of square deviations: 54746702901.54364
[2025-11-22 08:18:51] 2025-11-22 08:17:59,112 | INFO     | sum of deviations: 136342837884.34016
[2025-11-22 08:18:51] 2025-11-22 08:17:59,113 | INFO     | mean x: 1763782214.2442067
[2025-11-22 08:18:51] 2025-11-22 08:17:59,113 | INFO     | mean y: 3132086.873440285
[2025-11-22 08:18:51] 2025-11-22 08:17:59,113 | INFO     | intersect: -4389444264.846908
[2025-11-22 08:18:51] 2025-11-22 08:17:59,113 | INFO     | chi2: 53.242038556563
[2025-11-22 08:18:51] 2025-11-22 08:17:59,114 | INFO     | current chi2=53.242038556563 (change=9.233595069371628 %)
[2025-11-22 08:18:51] 2025-11-22 08:17:59,114 | INFO     | left removable region: 10
[2025-11-22 08:18:51] 2025-11-22 08:17:59,114 | INFO     | sum of square deviations: 51589021139.67467
[2025-11-22 08:18:51] 2025-11-22 08:17:59,122 | INFO     | sum of deviations: 147831399928.7069
[2025-11-22 08:18:51] 2025-11-22 08:17:59,123 | INFO     | mean x: 1763782183.769091
[2025-11-22 08:18:51] 2025-11-22 08:17:59,123 | INFO     | mean y: 3186610.1945454543
[2025-11-22 08:18:51] 2025-11-22 08:17:59,123 | INFO     | intersect: -5051035851.013812
[2025-11-22 08:18:51] 2025-11-22 08:17:59,123 | INFO     | chi2: 43.09643123876871
[2025-11-22 08:18:51] 2025-11-22 08:17:59,124 | INFO     | current memory leak: 2.87 B/s (using 550 data points, chi2=43.10)
[2025-11-22 08:18:51] 2025-11-22 08:17:59,125 | INFO     | could have reported an average CPU frequency of 2392 MHz (22 samples)
[2025-11-22 08:18:51] 2025-11-22 08:17:59,125 | INFO     | ..............................
[2025-11-22 08:18:51] 2025-11-22 08:17:59,125 | INFO     | . Timing measurements:
[2025-11-22 08:18:51] 2025-11-22 08:17:59,125 | INFO     | . get job = 0 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,125 | INFO     | . initial setup = 11 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,126 | INFO     | . payload setup = 183 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,126 | INFO     | . stage-in = 0 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,126 | INFO     | . payload execution = 34677 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,126 | INFO     | . stage-out = 6 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,126 | INFO     | . log creation = 2 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,126 | INFO     | ..............................
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | 
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | job summary report
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | --------------------------------------------------
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | PanDA job id: 6891602254
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | task id: 47493068
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | errors: (none)
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 08:18:51] 2025-11-22 08:17:59,261 | INFO     | pilot state: finished 
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | transexitcode: 0
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | exeerrorcode: 0
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | exeerrordiag: 
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | exitcode: 0
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | exitmsg: OK
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | cpuconsumptiontime: 259667 s
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | nevents: 1000
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | neventsw: 0
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | pid: 2918335
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | pgrp: 2918335
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | corecount: 12
[2025-11-22 08:18:51] 2025-11-22 08:17:59,262 | INFO     | event service: False
[2025-11-22 08:18:51] 2025-11-22 08:17:59,263 | INFO     | sizes: {0: 2297968, 1: 2298676, 2: 2298875, 13: 2298875, 24: 2298931, 35: 2298959, 45: 2299115, 56: 2299143, 67: 2299171, 78: 2299199, 88: 2299255, 99: 2299563, 11
[2025-11-22 08:18:51] 2025-11-22 08:17:59,263 | INFO     | --------------------------------------------------
[2025-11-22 08:18:51] 2025-11-22 08:17:59,263 | INFO     | 
[2025-11-22 08:18:51] 2025-11-22 08:17:59,263 | INFO     | executing command: ls -lF /opt/boinc/instance_homes/boinc_31418/slots/1
[2025-11-22 08:18:51] 2025-11-22 08:17:59,587 | INFO     | time since job start (35299s) is within the limit (172800.0s)
[2025-11-22 08:18:51] 2025-11-22 08:18:00,299 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,299 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,299 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,300 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 08:18:51] 2025-11-22 08:18:00,301 | INFO     | job 6891602254 has completed (purged errors)
[2025-11-22 08:18:51] 2025-11-22 08:18:00,302 | INFO     | overall cleanup function is called
[2025-11-22 08:18:51] 2025-11-22 08:18:01,343 | INFO     | --- collectZombieJob: --- 10, [2918335]
[2025-11-22 08:18:51] 2025-11-22 08:18:01,343 | INFO     | zombie collector waiting for pid 2918335
[2025-11-22 08:18:51] 2025-11-22 08:18:01,343 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 08:18:51] 2025-11-22 08:18:01,343 | INFO     | collected zombie processes
[2025-11-22 08:18:51] 2025-11-22 08:18:01,343 | INFO     | will attempt to kill all subprocesses of pid=2918335
[2025-11-22 08:18:51] 2025-11-22 08:18:02,371 | INFO     | process IDs to be killed: [2918335] (in reverse order)
[2025-11-22 08:18:51] 2025-11-22 08:18:10,170 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 08:18:51] 2025-11-22 08:18:10,170 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 08:18:51] 2025-11-22 08:18:10,205 | INFO     | did not find any defunct processes belonging to 2918335
[2025-11-22 08:18:51] 2025-11-22 08:18:10,259 | INFO     | did not find any defunct processes belonging to 2918335
[2025-11-22 08:18:51] 2025-11-22 08:18:10,327 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 08:18:51] 2025-11-22 08:18:10,327 | INFO     | ready for new job
[2025-11-22 08:18:51] 2025-11-22 08:18:10,327 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 08:18:51] 2025-11-22 08:18:10,332 | INFO     | ***************************************
[2025-11-22 08:18:51] 2025-11-22 08:18:10,332 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 08:18:51] 2025-11-22 08:18:10,332 | INFO     | ***************************************
[2025-11-22 08:18:51] 2025-11-22 08:18:10,332 | INFO     | 
[2025-11-22 08:18:51] 2025-11-22 08:18:10,373 | INFO     | architecture information:
[2025-11-22 08:18:51] 2025-11-22 08:18:10,403 | INFO     | executing command: cat /etc/os-release
[2025-11-22 08:18:51] 2025-11-22 08:18:10,943 | INFO     | cat /etc/os-release:
[2025-11-22 08:18:51] NAME="CentOS Linux"
[2025-11-22 08:18:51] VERSION="7 (Core)"
[2025-11-22 08:18:51] ID="centos"
[2025-11-22 08:18:51] ID_LIKE="rhel fedora"
[2025-11-22 08:18:51] VERSION_ID="7"
[2025-11-22 08:18:51] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 08:18:51] ANSI_COLOR="0;31"
[2025-11-22 08:18:51] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 08:18:51] HOME_URL="https://www.centos.org/"
[2025-11-22 08:18:51] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 08:18:51] 
[2025-11-22 08:18:51] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 08:18:51] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 08:18:51] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 08:18:51] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 08:18:51] 
[2025-11-22 08:18:51] 2025-11-22 08:18:10,944 | INFO     | ***************************************
[2025-11-22 08:18:51] 2025-11-22 08:18:11,451 | INFO     | executing command: df -mP /opt/boinc/instance_homes/boinc_31418/slots/1
[2025-11-22 08:18:51] 2025-11-22 08:18:11,949 | INFO     | sufficient remaining disk space (327026737152 B)
[2025-11-22 08:18:51] 2025-11-22 08:18:11,949 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 08:18:51] 2025-11-22 08:18:11,949 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 08:18:51] 2025-11-22 08:18:11,949 | INFO     | update_server=False
[2025-11-22 08:18:51] 2025-11-22 08:18:11,949 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 08:18:51] 2025-11-22 08:18:11,950 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:18:51] 2025-11-22 08:18:11,950 | INFO     | aborting loop
[2025-11-22 08:18:51] 2025-11-22 08:18:12,037 | INFO     | all job control threads have been joined
[2025-11-22 08:18:51] 2025-11-22 08:18:12,315 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 08:18:51] 2025-11-22 08:18:12,393 | INFO     | all payload control threads have been joined
[2025-11-22 08:18:51] 2025-11-22 08:18:12,727 | INFO     | all data control threads have been joined
[2025-11-22 08:18:51] 2025-11-22 08:18:12,871 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 08:18:51] 2025-11-22 08:18:12,955 | INFO     | [job] retrieve thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:12,955 | INFO     | [job] job monitor thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,047 | INFO     | [job] control thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,319 | INFO     | [job] queue monitor thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,399 | INFO     | [payload] control thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,731 | INFO     | [data] control thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,815 | INFO     | [job] validate thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,823 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,827 | INFO     | [payload] validate_post thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:13,935 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:14,191 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:14,275 | INFO     | [data] copytool_in thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:14,447 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 08:18:51] 2025-11-22 08:18:14,567 | INFO     | [payload] failed_post thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:14,879 | INFO     | [data] copytool_out thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:18,463 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:22,327 | INFO     | job.realtimelogging is not enabled
[2025-11-22 08:18:51] 2025-11-22 08:18:23,335 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 08:18:51] 2025-11-22 08:18:34,334 | INFO     | PID=2897937 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 08:18:51] 2025-11-22 08:18:34,334 | INFO     | .. there are 15 such processes running
[2025-11-22 08:18:51] 2025-11-22 08:18:34,343 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 08:18:51] 2025-11-22 08:18:34,343 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 08:18:51] 2025-11-22 08:18:34,343 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 08:18:51] 2025-11-22 08:18:39,619 | INFO     | [monitor] cgroup control has ended
[2025-11-22 08:18:51] 2025-11-22 08:18:40,499 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140041115170624)>', '<ExcThread(monitor, started 140040680232704)>']
[2025-11-22 08:18:51] 2025-11-22 08:18:41,383 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 08:18:51] 2025-11-22 08:18:41,383 | INFO     | [monitor] control thread has ended
[2025-11-22 08:18:51] 2025-11-22 08:18:45,527 | INFO     | all workflow threads have been joined
[2025-11-22 08:18:51] 2025-11-22 08:18:45,527 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 08:18:51] 2025-11-22 08:18:45,527 | INFO     | traces error code: 0
[2025-11-22 08:18:51] 2025-11-22 08:18:45,527 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 08:18:51] 2025-11-22 08:18:46,123 [wrapper] ==== pilot stdout END ====
[2025-11-22 08:18:51] 2025-11-22 08:18:46,355 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 08:18:51] 2025-11-22 08:18:46,439 [wrapper] pilotpid: 2897937
[2025-11-22 08:18:51] 2025-11-22 08:18:46,567 [wrapper] Pilot exit status: 0
[2025-11-22 08:18:51] 2025-11-22 08:18:47,087 [wrapper] pandaids: 6891602254
[2025-11-22 08:18:51] 2025-11-22 08:18:47,867 [wrapper] cleanup supervisor_pilot 3931784 2897938
[2025-11-22 08:18:51] 2025-11-22 08:18:48,043 [wrapper] Test setup, not cleaning
[2025-11-22 08:18:51] 2025-11-22 08:18:48,207 [wrapper] apfmon messages muted
[2025-11-22 08:18:51] 2025-11-22 08:18:48,339 [wrapper] ==== wrapper stdout END ====
[2025-11-22 08:18:51] 2025-11-22 08:18:48,451 [wrapper] ==== wrapper stderr END ====
[2025-11-22 08:18:51]  *** Error codes and diagnostics ***
[2025-11-22 08:18:51]     "exeErrorCode": 0,
[2025-11-22 08:18:51]     "exeErrorDiag": "",
[2025-11-22 08:18:51]     "pilotErrorCode": 0,
[2025-11-22 08:18:51]     "pilotErrorDiag": "",
[2025-11-22 08:18:51]  *** Listing of results directory ***
[2025-11-22 08:18:51] total 1312036
[2025-11-22 08:18:51] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:20 queuedata.json
[2025-11-22 08:18:51] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:21 pilot3.tar.gz
[2025-11-22 08:18:51] -rwx------ 1 boinc boinc     36292 Nov 18 19:22 runpilot2-wrapper.sh
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc       100 Nov 21 22:24 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 08:18:51] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 22:24 run_atlas
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc       105 Nov 21 22:24 job.xml
[2025-11-22 08:18:51] drwxrwx--x 2 boinc boinc      4096 Nov 21 22:24 shared
[2025-11-22 08:18:51] -rw-r--r-- 2 boinc boinc    590101 Nov 21 22:24 input.tar.gz
[2025-11-22 08:18:51] -rw-r--r-- 2 boinc boinc 409626126 Nov 21 22:24 EVNT.47493065._000907.pool.root.1
[2025-11-22 08:18:51] -rw-r--r-- 2 boinc boinc     15120 Nov 21 22:24 start_atlas.sh
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc      7040 Nov 21 22:24 init_data.xml
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc         0 Nov 21 22:24 boinc_setup_complete
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc         0 Nov 21 22:24 boinc_lockfile
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc      2773 Nov 21 22:24 pandaJob.out
[2025-11-22 08:18:51] -rw------- 1 boinc boinc    989798 Nov 21 22:29 agis_schedconf.cvmfs.json
[2025-11-22 08:18:51] drwx------ 5 boinc boinc      4096 Nov 21 22:29 pilot3
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc       533 Nov 22 07:31 boinc_task_state.xml
[2025-11-22 08:18:51] -rw------- 1 boinc boinc 916264239 Nov 22 08:14 HITS.47493068._007219.pool.root.1
[2025-11-22 08:18:51] -rw------- 1 boinc boinc      1038 Nov 22 08:15 memory_monitor_summary.json
[2025-11-22 08:18:51] -rw------- 1 boinc boinc   1526164 Nov 22 08:15 agis_ddmendpoints.agis.ALL.json
[2025-11-22 08:18:51] -rw------- 1 boinc boinc   2245524 Nov 22 08:15 log.47493068._007219.job.log.tgz.1
[2025-11-22 08:18:51] -rw------- 1 boinc boinc      8575 Nov 22 08:17 heartbeat.json
[2025-11-22 08:18:51] -rw------- 1 boinc boinc        95 Nov 22 08:18 pilot_heartbeat.json
[2025-11-22 08:18:51] -rw------- 1 boinc boinc      4920 Nov 22 08:18 pilotlog.txt
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc      8192 Nov 22 08:18 boinc_mmap_file
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc        29 Nov 22 08:18 wrapper_checkpoint.txt
[2025-11-22 08:18:51] -rw------- 1 boinc boinc   4610782 Nov 22 08:18 log.47493068._007219.job.log.1
[2025-11-22 08:18:51] -rw------- 1 boinc boinc       353 Nov 22 08:18 output.list
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc       620 Nov 22 08:18 runtime_log
[2025-11-22 08:18:51] -rw------- 1 boinc boinc   6871040 Nov 22 08:18 result.tar.gz
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc      9008 Nov 22 08:18 runtime_log.err
[2025-11-22 08:18:51] -rw------- 1 boinc boinc       660 Nov 22 08:18 aJSNDmlSgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUTGKDmLQnjGn.diag
[2025-11-22 08:18:51] -rw-rw-r-- 1 boinc boinc     21636 Nov 22 08:18 stderr.txt
[2025-11-22 08:18:51] HITS file was successfully produced:
[2025-11-22 08:18:51] -rw------- 1 boinc boinc 916264239 Nov 22 08:14 shared/HITS.pool.root.1
[2025-11-22 08:18:51]  *** Contents of shared directory: ***
[2025-11-22 08:18:51] total 1302136
[2025-11-22 08:18:51] -rw-r--r-- 2 boinc boinc    590101 Nov 21 22:24 input.tar.gz
[2025-11-22 08:18:51] -rw-r--r-- 2 boinc boinc 409626126 Nov 21 22:24 ATLAS.root_0
[2025-11-22 08:18:51] -rw-r--r-- 2 boinc boinc     15120 Nov 21 22:24 start_atlas.sh
[2025-11-22 08:18:51] -rw------- 1 boinc boinc 916264239 Nov 22 08:14 HITS.pool.root.1
[2025-11-22 08:18:51] -rw------- 1 boinc boinc   6871040 Nov 22 08:18 result.tar.gz
08:18:53 (2883202): run_atlas exited; CPU time 260907.433300
08:18:53 (2883202): called boinc_finish(0)

</stderr_txt>
]]>

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