Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:12:14 (1192650): wrapper (7.7.26015): starting
00:12:14 (1192650): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 00:12:14] Arguments: --nthreads 8
[2025-11-19 00:12:14] Threads: 8
[2025-11-19 00:12:14] Checking for CVMFS
[2025-11-19 00:12:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:12:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:12:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:12:17] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:12:17] 2.13.2.0 37103 23195 191652 153031 3 96 40137456 40960001 15450 16776704 0 29820904 99.626 27763916 21187 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:12:17] CVMFS is ok
[2025-11-19 00:12:17] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:12:17] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:12:17] Further information can be found at the LHC@home message board.
[2025-11-19 00:12:17] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:12:17] Checking for apptainer binary...
[2025-11-19 00:12:17] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:12:17] Running /usr/bin/apptainer --version
[2025-11-19 00:12:20] apptainer version 1.4.4-1.el9
[2025-11-19 00:12:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:12:22] c-211-9.aglt2.org
[2025-11-19 00:12:22] apptainer works
[2025-11-19 00:12:22] Set ATHENA_PROC_NUMBER=8
[2025-11-19 00:12:22] Set ATHENA_CORE_NUMBER=8
[2025-11-19 00:12:22] Starting ATLAS job with PandaID=6891598990
[2025-11-19 00:12:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
00:00:04 (1192650): BOINC client no longer exists - exiting
00:00:04 (1192650): timer handler: client dead, exiting
00:00:14 (2420730): wrapper (7.7.26015): starting
00:00:14 (2420730): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:00:14] Arguments: --nthreads 9
[2025-11-21 00:00:14] Threads: 9
[2025-11-21 00:00:14] This job has been restarted, cleaning up previous attempt
[2025-11-21 00:00:15] Checking for CVMFS
[2025-11-21 00:00:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:00:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:00:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:00:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:00:15] 2.13.2.0 37103 26063 204052 153108 3 120 31568394 40960000 6402 16776704 0 35165280 99.587 35389178 21758 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-21 00:00:15] CVMFS is ok
[2025-11-21 00:00:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:00:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:00:15] Further information can be found at the LHC@home message board.
[2025-11-21 00:00:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:00:15] Checking for apptainer binary...
[2025-11-21 00:00:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:00:15] Running /usr/bin/apptainer --version
[2025-11-21 00:00:15] apptainer version 1.4.4-1.el9
[2025-11-21 00:00:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:00:15] c-211-9.aglt2.org
[2025-11-21 00:00:15] apptainer works
[2025-11-21 00:00:15] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:00:15] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:00:15] Starting ATLAS job with PandaID=6891598990
[2025-11-21 00:00:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 02:35:59]  *** The last 200 lines of the pilot log: ***
[2025-11-22 02:35:59] 2025-11-22 07:34:38,615 | INFO     | monitor loop #5406: job 0:6891598990 is in state 'finished'
[2025-11-22 02:35:59] 2025-11-22 07:34:38,615 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:35:59] 2025-11-22 07:34:40,063 | INFO     | time since job start (95653s) is within the limit (172800.0s)
[2025-11-22 02:35:59] 2025-11-22 07:34:41,120 | INFO     | monitor loop #5407: job 0:6891598990 is in state 'finished'
[2025-11-22 02:35:59] 2025-11-22 07:34:41,120 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:35:59] 2025-11-22 07:34:42,078 | INFO     | time since job start (95655s) is within the limit (172800.0s)
[2025-11-22 02:35:59] 2025-11-22 07:34:43,649 | INFO     | monitor loop #5408: job 0:6891598990 is in state 'finished'
[2025-11-22 02:35:59] 2025-11-22 07:34:43,649 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:35:59] 2025-11-22 07:34:44,085 | INFO     | time since job start (95657s) is within the limit (172800.0s)
[2025-11-22 02:35:59] 2025-11-22 07:34:46,092 | INFO     | time since job start (95659s) is within the limit (172800.0s)
[2025-11-22 02:35:59] 2025-11-22 07:34:46,093 | INFO     | 95661s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-22 02:35:59] 2025-11-22 07:34:46,192 | INFO     | monitor loop #5409: job 0:6891598990 is in state 'finished'
[2025-11-22 02:35:59] 2025-11-22 07:34:46,193 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:35:59] 2025-11-22 07:34:46,698 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 02:35:59] 2025-11-22 07:34:46,711 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2519.716979166667
[2025-11-22 02:35:59] 2025-11-22 07:34:46,732 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6891598990/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 02:35:59] 2025-11-22 07:34:46,733 | INFO     | extracted standard info from prmon json
[2025-11-22 02:35:59] 2025-11-22 07:34:46,733 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 02:35:59] 2025-11-22 07:34:46,733 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 02:35:59] 2025-11-22 07:34:46,796 | INFO     | fitting pss+swap vs Time
[2025-11-22 02:35:59] 2025-11-22 07:34:46,798 | INFO     | sum of square deviations: 1193511670730.9797
[2025-11-22 02:35:59] 2025-11-22 07:34:47,100 | INFO     | sum of deviations: -2807455325647.34
[2025-11-22 02:35:59] 2025-11-22 07:34:47,197 | INFO     | mean x: 1763749025.6094449
[2025-11-22 02:35:59] 2025-11-22 07:34:47,197 | INFO     | mean y: 3043576.6987874922
[2025-11-22 02:35:59] 2025-11-22 07:34:47,197 | INFO     | intersect: 4151848080.654623
[2025-11-22 02:35:59] 2025-11-22 07:34:47,199 | INFO     | chi2: 54.49159333952096
[2025-11-22 02:35:59] 2025-11-22 07:34:47,242 | INFO     | sum of square deviations: 1182130906581.2258
[2025-11-22 02:35:59] 2025-11-22 07:34:48,034 | INFO     | sum of deviations: -2153033198511.279
[2025-11-22 02:35:59] 2025-11-22 07:34:48,034 | INFO     | mean x: 1763748873.1357234
[2025-11-22 02:35:59] 2025-11-22 07:34:48,082 | INFO     | mean y: 3052343.5390524967
[2025-11-22 02:35:59] 2025-11-22 07:34:48,082 | INFO     | intersect: 3215395288.433663
[2025-11-22 02:35:59] 2025-11-22 07:34:48,084 | INFO     | chi2: 49.59248887476166
[2025-11-22 02:35:59] 2025-11-22 07:34:48,084 | INFO     | current chi2=49.59248887476166 (change=8.990569305313628 %)
[2025-11-22 02:35:59] 2025-11-22 07:34:48,084 | INFO     | right removable region: 1561
[2025-11-22 02:35:59] 2025-11-22 07:34:48,130 | INFO     | sum of square deviations: 1182123344633.0352
[2025-11-22 02:35:59] 2025-11-22 07:34:48,410 | INFO     | time since job start (95661s) is within the limit (172800.0s)
[2025-11-22 02:35:59] 2025-11-22 07:34:49,024 | INFO     | monitor loop #5410: job 0:6891598990 is in state 'finished'
[2025-11-22 02:35:59] 2025-11-22 07:34:49,025 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 02:35:59] 2025-11-22 07:34:49,031 | INFO     | sum of deviations: -3227368884262.4976
[2025-11-22 02:35:59] 2025-11-22 07:34:49,032 | INFO     | mean x: 1763749178.133803
[2025-11-22 02:35:59] 2025-11-22 07:34:49,032 | INFO     | mean y: 3049195.3181818184
[2025-11-22 02:35:59] 2025-11-22 07:34:49,067 | INFO     | intersect: 4818341307.597405
[2025-11-22 02:35:59] 2025-11-22 07:34:49,070 | INFO     | chi2: 52.511802117838364
[2025-11-22 02:35:59] 2025-11-22 07:34:49,070 | INFO     | current chi2=52.511802117838364 (change=3.633204867670329 %)
[2025-11-22 02:35:59] 2025-11-22 07:34:49,070 | INFO     | left removable region: 10
[2025-11-22 02:35:59] 2025-11-22 07:34:49,111 | INFO     | sum of square deviations: 1157333832700.588
[2025-11-22 02:35:59] 2025-11-22 07:34:50,070 | INFO     | sum of deviations: -2620096663892.9277
[2025-11-22 02:35:59] 2025-11-22 07:34:50,070 | INFO     | mean x: 1763749147.688588
[2025-11-22 02:35:59] 2025-11-22 07:34:50,070 | INFO     | mean y: 3061644.2920696326
[2025-11-22 02:35:59] 2025-11-22 07:34:50,070 | INFO     | intersect: 3996026446.003181
[2025-11-22 02:35:59] 2025-11-22 07:34:50,073 | INFO     | chi2: 46.68265643794839
[2025-11-22 02:35:59] 2025-11-22 07:34:50,206 | INFO     | current memory leak: -2.26 B/s (using 1551 data points, chi2=46.68)
[2025-11-22 02:35:59] 2025-11-22 07:34:50,208 | INFO     | could have reported an average CPU frequency of 2678 MHz (55 samples)
[2025-11-22 02:35:59] 2025-11-22 07:34:50,208 | INFO     | ..............................
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . Timing measurements:
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . get job = 0 s
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . initial setup = 2 s
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . payload setup = 6 s
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . stage-in = 0 s
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . payload execution = 95548 s
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . stage-out = 29 s
[2025-11-22 02:35:59] 2025-11-22 07:34:50,209 | INFO     | . log creation = 10 s
[2025-11-22 02:35:59] 2025-11-22 07:34:50,210 | INFO     | ..............................
[2025-11-22 02:35:59] 2025-11-22 07:34:50,696 | INFO     | time since job start (95663s) is within the limit (172800.0s)
[2025-11-22 02:35:59] 2025-11-22 07:34:51,685 | INFO     | 
[2025-11-22 02:35:59] 2025-11-22 07:34:51,686 | INFO     | job summary report
[2025-11-22 02:35:59] 2025-11-22 07:34:51,686 | INFO     | --------------------------------------------------
[2025-11-22 02:35:59] 2025-11-22 07:34:51,686 | INFO     | PanDA job id: 6891598990
[2025-11-22 02:35:59] 2025-11-22 07:34:51,686 | INFO     | task id: 47493068
[2025-11-22 02:35:59] 2025-11-22 07:34:51,686 | INFO     | errors: (none)
[2025-11-22 02:35:59] 2025-11-22 07:34:51,686 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 02:35:59] 2025-11-22 07:34:51,686 | INFO     | pilot state: finished 
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | transexitcode: 0
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | exeerrorcode: 0
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | exeerrordiag: 
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | exitcode: 0
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | exitmsg: OK
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | cpuconsumptiontime: 322269 s
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | nevents: 1000
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | neventsw: 0
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | pid: 2460611
[2025-11-22 02:35:59] 2025-11-22 07:34:51,687 | INFO     | pgrp: 2460611
[2025-11-22 02:35:59] 2025-11-22 07:34:51,688 | INFO     | corecount: 9
[2025-11-22 02:35:59] 2025-11-22 07:34:51,688 | INFO     | event service: False
[2025-11-22 02:35:59] 2025-11-22 07:34:51,688 | INFO     | sizes: {0: 2298625, 1: 2298824, 5: 2299086, 11: 2299142, 95556: 2368389, 95558: 2368388, 95588: 2377566, 95590: 2377622, 95649: 2377868}
[2025-11-22 02:35:59] 2025-11-22 07:34:51,688 | INFO     | --------------------------------------------------
[2025-11-22 02:35:59] 2025-11-22 07:34:51,688 | INFO     | 
[2025-11-22 02:35:59] 2025-11-22 07:34:51,688 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-22 02:35:59] 2025-11-22 07:34:51,808 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,809 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,809 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,809 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,809 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,810 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,811 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,811 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,811 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,811 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,841 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 02:35:59] 2025-11-22 07:34:51,842 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,842 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 02:35:59] 2025-11-22 07:34:51,842 | INFO     | job 6891598990 has completed (purged errors)
[2025-11-22 02:35:59] 2025-11-22 07:34:51,842 | INFO     | overall cleanup function is called
[2025-11-22 02:35:59] 2025-11-22 07:34:53,127 | INFO     | --- collectZombieJob: --- 10, [2460611]
[2025-11-22 02:35:59] 2025-11-22 07:34:53,127 | INFO     | zombie collector waiting for pid 2460611
[2025-11-22 02:35:59] 2025-11-22 07:34:53,128 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 02:35:59] 2025-11-22 07:34:53,128 | INFO     | collected zombie processes
[2025-11-22 02:35:59] 2025-11-22 07:34:53,128 | INFO     | will attempt to kill all subprocesses of pid=2460611
[2025-11-22 02:35:59] 2025-11-22 07:34:56,556 | INFO     | process IDs to be killed: [2460611] (in reverse order)
[2025-11-22 02:35:59] 2025-11-22 07:34:56,771 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 02:35:59] 2025-11-22 07:34:56,771 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 02:35:59] 2025-11-22 07:34:56,792 | INFO     | did not find any defunct processes belonging to 2460611
[2025-11-22 02:35:59] 2025-11-22 07:34:56,821 | INFO     | did not find any defunct processes belonging to 2460611
[2025-11-22 02:35:59] 2025-11-22 07:34:56,826 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 02:35:59] 2025-11-22 07:34:56,827 | INFO     | ready for new job
[2025-11-22 02:35:59] 2025-11-22 07:34:56,827 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 02:35:59] 2025-11-22 07:34:56,835 | INFO     | ***************************************
[2025-11-22 02:35:59] 2025-11-22 07:34:56,836 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 02:35:59] 2025-11-22 07:34:56,836 | INFO     | ***************************************
[2025-11-22 02:35:59] 2025-11-22 07:34:56,836 | INFO     | 
[2025-11-22 02:35:59] 2025-11-22 07:34:56,843 | INFO     | architecture information:
[2025-11-22 02:35:59] 2025-11-22 07:34:56,844 | INFO     | executing command: cat /etc/os-release
[2025-11-22 02:35:59] 2025-11-22 07:34:56,894 | INFO     | cat /etc/os-release:
[2025-11-22 02:35:59] NAME="CentOS Linux"
[2025-11-22 02:35:59] VERSION="7 (Core)"
[2025-11-22 02:35:59] ID="centos"
[2025-11-22 02:35:59] ID_LIKE="rhel fedora"
[2025-11-22 02:35:59] VERSION_ID="7"
[2025-11-22 02:35:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 02:35:59] ANSI_COLOR="0;31"
[2025-11-22 02:35:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 02:35:59] HOME_URL="https://www.centos.org/"
[2025-11-22 02:35:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 02:35:59] 
[2025-11-22 02:35:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 02:35:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 02:35:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 02:35:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 02:35:59] 
[2025-11-22 02:35:59] 2025-11-22 07:34:56,895 | INFO     | ***************************************
[2025-11-22 02:35:59] 2025-11-22 07:34:57,399 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-22 02:35:59] 2025-11-22 07:34:57,512 | INFO     | sufficient remaining disk space (54945382400 B)
[2025-11-22 02:35:59] 2025-11-22 07:34:57,512 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 02:35:59] 2025-11-22 07:34:57,512 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 02:35:59] 2025-11-22 07:34:57,513 | INFO     | update_server=False
[2025-11-22 02:35:59] 2025-11-22 07:34:57,513 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 02:35:59] 2025-11-22 07:34:57,513 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:35:59] 2025-11-22 07:34:57,659 | INFO     | all data control threads have been joined
[2025-11-22 02:35:59] 2025-11-22 07:34:57,760 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 02:35:59] 2025-11-22 07:34:57,761 | INFO     | aborting loop
[2025-11-22 02:35:59] 2025-11-22 07:34:57,912 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 02:35:59] 2025-11-22 07:34:58,293 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 02:35:59] 2025-11-22 07:34:58,371 | INFO     | all job control threads have been joined
[2025-11-22 02:35:59] 2025-11-22 07:34:58,525 | INFO     | [job] retrieve thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:58,549 | INFO     | [job] queue monitor thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:58,664 | INFO     | [data] control thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:58,765 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:58,774 | INFO     | [job] job monitor thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:58,870 | INFO     | all payload control threads have been joined
[2025-11-22 02:35:59] 2025-11-22 07:34:59,362 | INFO     | [payload] failed_post thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,376 | INFO     | [job] control thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,394 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,455 | INFO     | [job] validate thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,563 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,619 | INFO     | [data] copytool_in thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,645 | INFO     | [payload] validate_post thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,684 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:34:59,888 | INFO     | [payload] control thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:35:00,301 | INFO     | [data] copytool_out thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:35:01,921 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 02:35:59] 2025-11-22 07:35:29,161 | INFO     | [monitor] cgroup control has ended
[2025-11-22 02:35:59] 2025-11-22 07:35:30,756 | INFO     | PID=2433737 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 02:35:59] 2025-11-22 07:35:30,756 | INFO     | .. there are 17 such processes running
[2025-11-22 02:35:59] 2025-11-22 07:35:30,757 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 02:35:59] 2025-11-22 07:35:30,799 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 02:35:59] 2025-11-22 07:35:30,799 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 02:35:59] 2025-11-22 07:35:30,945 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140142678394688)>', '<ExcThread(monitor, started 140141964293888)>']
[2025-11-22 02:35:59] 2025-11-22 07:35:31,813 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 02:35:59] 2025-11-22 07:35:31,813 | INFO     | [monitor] control thread has ended
[2025-11-22 02:35:59] 2025-11-22 07:35:35,975 | INFO     | all workflow threads have been joined
[2025-11-22 02:35:59] 2025-11-22 07:35:35,976 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 02:35:59] 2025-11-22 07:35:35,976 | INFO     | traces error code: 0
[2025-11-22 02:35:59] 2025-11-22 07:35:35,976 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 02:35:59] 2025-11-22 07:35:37,799 [wrapper] ==== pilot stdout END ====
[2025-11-22 02:35:59] 2025-11-22 07:35:37,872 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 02:35:59] 2025-11-22 07:35:37,959 [wrapper] pilotpid: 2433737
[2025-11-22 02:35:59] 2025-11-22 07:35:38,008 [wrapper] Pilot exit status: 0
[2025-11-22 02:35:59] 2025-11-22 07:35:38,200 [wrapper] pandaids: 6891598990 6891598990
[2025-11-22 02:35:59] 2025-11-22 07:35:38,788 [wrapper] cleanup supervisor_pilot 1651998 2433738
[2025-11-22 02:35:59] 2025-11-22 07:35:38,830 [wrapper] Test setup, not cleaning
[2025-11-22 02:35:59] 2025-11-22 07:35:38,854 [wrapper] apfmon messages muted
[2025-11-22 02:35:59] 2025-11-22 07:35:38,896 [wrapper] ==== wrapper stdout END ====
[2025-11-22 02:35:59] 2025-11-22 07:35:38,944 [wrapper] ==== wrapper stderr END ====
[2025-11-22 02:35:59]  *** Error codes and diagnostics ***
[2025-11-22 02:35:59]     "exeErrorCode": 0,
[2025-11-22 02:35:59]     "exeErrorDiag": "",
[2025-11-22 02:35:59]     "pilotErrorCode": 0,
[2025-11-22 02:35:59]     "pilotErrorDiag": "",
[2025-11-22 02:35:59]  *** Listing of results directory ***
[2025-11-22 02:35:59] total 1720624
[2025-11-22 02:35:59] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:00 queuedata.json
[2025-11-22 02:35:59] -rwx------. 1 boincer umatlas     36292 Nov 18 14:01 runpilot2-wrapper.sh
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:12 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 02:35:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:12 run_atlas
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:12 job.xml
[2025-11-22 02:35:59] -rw-r--r--. 3 boincer umatlas 409871147 Nov 19 00:12 EVNT.47493065._000812.pool.root.1
[2025-11-22 02:35:59] -rw-r--r--. 3 boincer umatlas 409871147 Nov 19 00:12 ATLAS.root_0
[2025-11-22 02:35:59] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:12 start_atlas.sh
[2025-11-22 02:35:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:12 shared
[2025-11-22 02:35:59] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 00:12 input.tar.gz
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:12 boinc_lockfile
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas      2773 Nov 21 00:00 pandaJob.out
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas    989817 Nov 21 00:00 agis_schedconf.cvmfs.json
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas       534 Nov 22 00:32 boinc_task_state.xml
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas 909681778 Nov 22 02:29 HITS.47493068._006767.pool.root.1
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas      6616 Nov 22 02:30 init_data.xml
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas      1075 Nov 22 02:33 memory_monitor_summary.json
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas   1526164 Nov 22 02:33 agis_ddmendpoints.agis.ALL.json
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas   2637461 Nov 22 02:33 log.47493068._006767.job.log.tgz.1
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas      8664 Nov 22 02:34 heartbeat.json
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas        95 Nov 22 02:35 pilot_heartbeat.json
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas      4824 Nov 22 02:35 pilotlog.txt
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas  11646441 Nov 22 02:35 log.47493068._006767.job.log.1
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas       353 Nov 22 02:35 output.list
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas       620 Nov 22 02:35 runtime_log
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas  14305280 Nov 22 02:35 result.tar.gz
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas       791 Nov 22 02:35 zp1LDmV8ff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmDOGKDmE2Kfvn.diag
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas      8784 Nov 22 02:35 runtime_log.err
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas        30 Nov 22 02:35 wrapper_checkpoint.txt
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 02:35 boinc_mmap_file
[2025-11-22 02:35:59] -rw-r--r--. 1 boincer umatlas     24084 Nov 22 02:35 stderr.txt
[2025-11-22 02:35:59] HITS file was successfully produced:
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas 909681778 Nov 22 02:29 shared/HITS.pool.root.1
[2025-11-22 02:35:59]  *** Contents of shared directory: ***
[2025-11-22 02:35:59] total 1303204
[2025-11-22 02:35:59] -rw-r--r--. 3 boincer umatlas 409871147 Nov 19 00:12 ATLAS.root_0
[2025-11-22 02:35:59] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:12 start_atlas.sh
[2025-11-22 02:35:59] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 00:12 input.tar.gz
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas 909681778 Nov 22 02:29 HITS.pool.root.1
[2025-11-22 02:35:59] -rw-------. 1 boincer umatlas  14305280 Nov 22 02:35 result.tar.gz
02:36:01 (2420730): run_atlas exited; CPU time 324984.362426
02:36:01 (2420730): called boinc_finish(0)

</stderr_txt>
]]>

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