Stderr output

<core_client_version>8.0.2</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-19 04:24:05 (21168): vboxwrapper version 26210
2025-11-19 04:24:05 (21168): BOINC client version: 8.0.2
2025-11-19 04:24:06 (21168): Detected: VirtualBox VboxManage Interface (Version: 7.0.6)
2025-11-19 04:24:06 (21168): Successfully copied 'init_data.xml' to the shared directory.
2025-11-19 04:24:06 (21168): Create VM. (boinc_082b23dbf102fd4b, slot#5)
2025-11-19 04:24:07 (21168): Setting Memory Size for VM. (4800MB)
2025-11-19 04:24:07 (21168): Setting CPU Count for VM. (8)
2025-11-19 04:24:07 (21168): Setting Chipset Options for VM.
2025-11-19 04:24:08 (21168): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-19 04:24:08 (21168): Setting Boot Options for VM.
2025-11-19 04:24:09 (21168): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-19 04:24:09 (21168): Enabling VM Network Access.
2025-11-19 04:24:09 (21168): Disabling USB Support for VM.
2025-11-19 04:24:09 (21168): Disabling COM Port Support for VM.
2025-11-19 04:24:10 (21168): Disabling LPT Port Support for VM.
2025-11-19 04:24:10 (21168): Disabling Audio Support for VM.
2025-11-19 04:24:10 (21168): Disabling Clipboard Support for VM.
2025-11-19 04:24:10 (21168): Disabling Drag and Drop Support for VM.
2025-11-19 04:24:11 (21168): Adding storage controller(s) to VM.
2025-11-19 04:24:11 (21168): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-19 04:24:13 (21168): Adding VirtualBox Guest Additions to VM.
2025-11-19 04:24:13 (21168): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-19 04:24:13 (21168): forwarding host port 53455 to guest port 80
2025-11-19 04:24:14 (21168): Enabling remote desktop for VM.
2025-11-19 04:24:14 (21168): Required extension pack not installed, remote desktop not enabled.
2025-11-19 04:24:14 (21168): Enabling shared directory for VM.
2025-11-19 04:24:14 (21168): Starting VM using VBoxManage interface. (boinc_082b23dbf102fd4b, slot#5)
2025-11-19 04:24:20 (21168): Successfully started VM. (PID = '41292')
2025-11-19 04:24:20 (21168): Reporting VM Process ID to BOINC.
2025-11-19 04:24:20 (21168): Guest Log: BIOS: VirtualBox 7.0.6
2025-11-19 04:24:20 (21168): Guest Log: CPUID EDX: 0x178bfbff
2025-11-19 04:24:20 (21168): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-19 04:24:20 (21168): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-19 04:24:20 (21168): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-19 04:24:20 (21168): Detected: Web Application Enabled (http://localhost:53455)
2025-11-19 04:24:20 (21168): Preference change detected
2025-11-19 04:24:20 (21168): Setting CPU throttle for VM. (50%)
2025-11-19 04:24:20 (21168): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-19 04:24:22 (21168): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-19 04:24:22 (21168): Guest Log: BIOS: Booting from Hard Disk...
2025-11-19 04:24:25 (21168): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-19 04:24:25 (21168): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-19 04:24:25 (21168): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-19 04:24:33 (21168): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-19 04:24:33 (21168): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-19 04:24:37 (21168): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000059 main     Log opened 2025-11-19T04:24:36.035871000Z
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000122 main     OS Product: Linux
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000134 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000144 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000155 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000155 main     Process ID: 1374
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000155 main     Package type: LINUX_64BITS_GENERIC
2025-11-19 04:24:37 (21168): Guest Log: 00:00:00.000616 main     5.2.32 r132073 started. Verbose level = 0
2025-11-19 04:24:38 (21168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-19 04:24:38 (21168): Guest Log: [INFO] Mounting shared directory
2025-11-19 04:24:38 (21168): Guest Log: [INFO] Checking for init_data.xml
2025-11-19 04:24:42 (21168): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-19 04:24:42 (21168): Guest Log: [INFO] Detected branch: prod
2025-11-19 04:24:43 (21168): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-19 04:24:43 (21168): Guest Log: Copying input files
2025-11-19 04:24:45 (21168): Guest Log: Copied input files into RunAtlas.
2025-11-19 04:24:45 (21168): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-19 04:24:45 (21168): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-19 04:24:45 (21168): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-19 04:24:45 (21168): Guest Log: Further information can be found at the LHC@home message board.
2025-11-19 04:24:47 (21168): Guest Log: 00:00:10.001564 timesync vgsvcTimeSyncWorker: Radical guest time change: 18 011 250 354 000ns (GuestNow=1 763 544 287 287 335 000 ns GuestLast=1 763 526 276 036 981 000 ns fSetTimeLastLoop=true )
2025-11-19 04:24:53 (21168): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-19 04:24:53 (21168): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-19 04:24:53 (21168): Guest Log: 2.6.3.0 1653 0 30156 153037 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-19 04:24:53 (21168): Guest Log: copied the webapp to /var/www
2025-11-19 04:24:53 (21168): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-19 04:24:53 (21168): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-19 04:24:53 (21168): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-19 04:24:53 (21168): Guest Log:  *** Starting ATLAS job. (PandaID=6891583740 taskID=47493068) ***
2025-11-19 04:32:29 (21168): VM state change detected. (old = 'running', new = 'paused')
2025-11-19 04:32:49 (21168): VM state change detected. (old = 'paused', new = 'running')
2025-11-19 04:41:31 (21168): VM state change detected. (old = 'running', new = 'paused')
2025-11-19 04:41:51 (21168): VM state change detected. (old = 'paused', new = 'running')
2025-11-19 04:45:41 (21168): VM state change detected. (old = 'running', new = 'paused')
2025-11-19 04:46:01 (21168): VM state change detected. (old = 'paused', new = 'running')
2025-11-19 04:46:40 (21168): Guest Log:  *** Job finished ***
2025-11-19 04:46:40 (21168): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,945 | INFO     | PID=6087 has CPU usage=0.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR -j managed --pilot-user ATLAS --harvester-submit-mode PUSH -w generic --job-type managed --resource-type MCORE -z -t
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,946 | INFO     | found 0 job(s) in 20 queues
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,946 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,946 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,946 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,946 | INFO     | [monitor] control thread has ended
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,953 | INFO     | all workflow threads have been joined
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,953 | INFO     | end of generic workflow (traces error code: 0)
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,954 | INFO     | traces error code: 0
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,954 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,993 [wrapper] ==== pilot stdout END ====
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,995 [wrapper] ==== wrapper stdout RESUME ====
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,997 [wrapper] pilotpid: 6087
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:37,999 [wrapper] Pilot exit status: 0
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:38,007 [wrapper] pandaids: 6891583740
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:38,031 [wrapper] cleanup supervisor_pilot 19458 6088
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:38,033 [wrapper] Test setup, not cleaning
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:38,035 [wrapper] apfmon messages muted
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:38,037 [wrapper] ==== wrapper stdout END ====
2025-11-19 04:46:40 (21168): Guest Log: 2025-11-19 09:45:38,038 [wrapper] ==== wrapper stderr END ====
2025-11-19 04:46:40 (21168): Guest Log:  *** Error codes and diagnostics ***
2025-11-19 04:46:40 (21168): Guest Log:     "exeErrorCode": 65,
2025-11-19 04:46:40 (21168): Guest Log:     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 3; Run: 284500; Evt: 122190022; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
2025-11-19 04:46:40 (21168): Guest Log:     "pilotErrorCode": 1305,
2025-11-19 04:46:40 (21168): Guest Log:     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 3; Run: 284500; Evt: 122190022; Current algorit",
2025-11-19 04:46:40 (21168): Guest Log:  *** Listing of results directory ***
2025-11-19 04:46:40 (21168): Guest Log: total 5240
2025-11-19 04:46:40 (21168): Guest Log: -rw-r--r--. 1 atlas atlas  576529 Nov 18 16:45 pilot3.tar.gz
2025-11-19 04:46:40 (21168): Guest Log: -rw-r--r--. 1 atlas atlas    5112 Nov 18 17:05 queuedata.json
2025-11-19 04:46:40 (21168): Guest Log: -rwx------. 1 atlas atlas   36292 Nov 18 17:07 runpilot2-wrapper.sh
2025-11-19 04:46:40 (21168): Guest Log: -rwxr-xr-x. 1 atlas atlas    9004 Nov 19 09:24 init_data.xml
2025-11-19 04:46:40 (21168): Guest Log: -rwxr-xr-x. 1 atlas atlas  590099 Nov 19 09:24 input.tar.gz
2025-11-19 04:46:40 (21168): Guest Log: -rwxr-xr-x. 1 atlas atlas   15120 Nov 19 09:24 start_atlas.sh
2025-11-19 04:46:40 (21168): Guest Log: lrwxrwxrwx. 1 atlas atlas      20 Nov 19 09:24 EVNT.47493065._000441.pool.root.1 -> /data/./ATLAS.root_0
2025-11-19 04:46:40 (21168): Guest Log: -rw-r--r--. 1 atlas atlas    2770 Nov 19 09:24 pandaJob.out
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas  989279 Nov 19 09:25 agis_schedconf.cvmfs.json
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas 1525063 Nov 19 09:25 agis_ddmendpoints.agis.ALL.json
2025-11-19 04:46:40 (21168): Guest Log: drwx------. 5 atlas atlas    4096 Nov 19 09:25 pilot3
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas    1022 Nov 19 09:43 memory_monitor_summary.json
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas  548528 Nov 19 09:43 log.47493068._004401.job.log.tgz.1
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas    9701 Nov 19 09:45 heartbeat.json
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas      95 Nov 19 09:45 pilot_heartbeat.json
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas    4805 Nov 19 09:45 pilotlog.txt
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas  209297 Nov 19 09:45 log.47493068._004401.job.log.1
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas     186 Nov 19 09:45 output.list
2025-11-19 04:46:40 (21168): Guest Log: -rw-r--r--. 1 atlas atlas     620 Nov 19 09:45 runtime_log
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas  778240 Nov 19 09:45 result.tar.gz
2025-11-19 04:46:40 (21168): Guest Log: -rw-r--r--. 1 atlas atlas    8478 Nov 19 09:45 runtime_log.err
2025-11-19 04:46:40 (21168): Guest Log: -rw-------. 1 atlas atlas     645 Nov 19 09:45 QUMNDm9Lef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmTyFKDmZQz3Do.diag
2025-11-19 04:46:40 (21168): Guest Log: Looking for outputfile HITS.47493068._004401.pool.root.1
2025-11-19 04:46:40 (21168): Guest Log: No HITS file was produced
2025-11-19 04:46:40 (21168): Guest Log: Successfully finished the ATLAS job!
2025-11-19 04:46:40 (21168): Guest Log: Copying the results back to the shared directory!
2025-11-19 04:46:40 (21168): Guest Log:  *** Contents of shared directory: ***
2025-11-19 04:46:40 (21168): Guest Log: total 402852
2025-11-19 04:46:40 (21168): Guest Log: -rwxrwxrwx. 1 root root 411116564 Nov 19 09:24 ATLAS.root_0
2025-11-19 04:46:40 (21168): Guest Log: -rwxrwxrwx. 1 root root      9004 Nov 19 09:24 init_data.xml
2025-11-19 04:46:40 (21168): Guest Log: -rwxrwxrwx. 1 root root    590099 Nov 19 05:28 input.tar.gz
2025-11-19 04:46:40 (21168): Guest Log: -rwxrwxrwx. 1 root root    778240 Nov 19  2025 result.tar.gz
2025-11-19 04:46:40 (21168): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 05:28 start_atlas.sh
2025-11-19 04:46:40 (21168): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-19 04:46:40 (21168): VM Completion File Detected.
2025-11-19 04:46:40 (21168): Powering off VM.
2025-11-19 04:46:41 (21168): Successfully stopped VM.
2025-11-19 04:46:41 (21168): Deregistering VM. (boinc_082b23dbf102fd4b, slot#5)
2025-11-19 04:46:41 (21168): Removing network bandwidth throttle group from VM.
2025-11-19 04:46:41 (21168): Removing VM from VirtualBox.
2025-11-19 04:46:46 (21168): called boinc_finish(0)

</stderr_txt>
]]>

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