Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
18:54:14 (3341866): wrapper (7.7.26015): starting
18:54:14 (3341866): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 18:54:14] Arguments: --nthreads 4
[2025-11-21 18:54:14] Threads: 4
[2025-11-21 18:54:14] Checking for CVMFS
[2025-11-21 18:54:14] No cvmfs_config command found, will try listing directly
[2025-11-21 18:54:14] CVMFS is ok
[2025-11-21 18:54:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 18:54:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 18:54:14] Further information can be found at the LHC@home message board.
[2025-11-21 18:54:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:54:14] Checking for apptainer binary...
[2025-11-21 18:54:14] which: no apptainer in ((null))
[2025-11-21 18:54:14] apptainer is not installed, using version from CVMFS
[2025-11-21 18:54:14] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:54:15] WARNING: Environment variable TMPDIR already has value [/scratch/boinc/var/slot56/slots/0/.apptainertmp], will not forward new value [/tmp] from parent process environment skurut04.grid.cesnet.cz
[2025-11-21 18:54:15] apptainer works
[2025-11-21 18:54:15] Set ATHENA_PROC_NUMBER=4
[2025-11-21 18:54:15] Set ATHENA_CORE_NUMBER=4
[2025-11-21 18:54:15] Starting ATLAS job with PandaID=6891595454
[2025-11-21 18:54:15] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/scratch/boinc/var/slot56/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 13:01:53]  *** The last 200 lines of the pilot log: ***
[2025-11-22 13:01:53] 2025-11-22 11:57:27,713 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 13:01:53] 2025-11-22 11:57:27,739 | INFO     | found 32 cores (16 cores per socket, 2 sockets) HT, CPU MHz: 2595.5122343749995
[2025-11-22 13:01:53] 2025-11-22 11:57:27,755 | INFO     | using path: /scratch/boinc/var/slot56/slots/0/PanDA_Pilot-6891595454/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 13:01:53] 2025-11-22 11:57:27,755 | INFO     | extracted standard info from prmon json
[2025-11-22 13:01:53] 2025-11-22 11:57:27,756 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 13:01:53] 2025-11-22 11:57:27,756 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 13:01:53] 2025-11-22 11:57:27,779 | INFO     | fitting pss+swap vs Time
[2025-11-22 13:01:53] 2025-11-22 11:57:27,781 | INFO     | sum of square deviations: 374564805410.9763
[2025-11-22 13:01:53] 2025-11-22 11:57:27,806 | INFO     | sum of deviations: 893217462239.3986
[2025-11-22 13:01:53] 2025-11-22 11:57:27,806 | INFO     | mean x: 1763780150.004695
[2025-11-22 13:01:53] 2025-11-22 11:57:27,806 | INFO     | mean y: 2314802.920187793
[2025-11-22 13:01:53] 2025-11-22 11:57:27,807 | INFO     | intersect: -4203737679.25798
[2025-11-22 13:01:53] 2025-11-22 11:57:27,808 | INFO     | chi2: 4.367955310393354
[2025-11-22 13:01:53] 2025-11-22 11:57:27,809 | INFO     | sum of square deviations: 369313973600.97705
[2025-11-22 13:01:53] 2025-11-22 11:57:27,833 | INFO     | sum of deviations: 1127640424926.716
[2025-11-22 13:01:53] 2025-11-22 11:57:27,833 | INFO     | mean x: 1763779997.5047169
[2025-11-22 13:01:53] 2025-11-22 11:57:27,834 | INFO     | mean y: 2321606.6566037736
[2025-11-22 13:01:53] 2025-11-22 11:57:27,834 | INFO     | intersect: -5383095052.428075
[2025-11-22 13:01:53] 2025-11-22 11:57:27,835 | INFO     | chi2: 2.0887802115381393
[2025-11-22 13:01:53] 2025-11-22 11:57:27,835 | INFO     | current chi2=2.0887802115381393 (change=52.179450953447706 %)
[2025-11-22 13:01:53] 2025-11-22 11:57:27,837 | INFO     | sum of square deviations: 364112445040.97626
[2025-11-22 13:01:53] 2025-11-22 11:57:27,861 | INFO     | sum of deviations: 1166167932185.4468
[2025-11-22 13:01:53] 2025-11-22 11:57:27,861 | INFO     | mean x: 1763779845.0047393
[2025-11-22 13:01:53] 2025-11-22 11:57:27,861 | INFO     | mean y: 2322733.310900474
[2025-11-22 13:01:53] 2025-11-22 11:57:27,861 | INFO     | intersect: -5646656099.170562
[2025-11-22 13:01:53] 2025-11-22 11:57:27,863 | INFO     | chi2: 1.9441330795558727
[2025-11-22 13:01:53] 2025-11-22 11:57:27,863 | INFO     | current chi2=1.9441330795558727 (change=6.924957024355911 %)
[2025-11-22 13:01:53] 2025-11-22 11:57:27,863 | INFO     | right removable region: 1054
[2025-11-22 13:01:53] 2025-11-22 11:57:27,865 | INFO     | sum of square deviations: 369313970550.977
[2025-11-22 13:01:53] 2025-11-22 11:57:27,888 | INFO     | sum of deviations: 700822935670.151
[2025-11-22 13:01:53] 2025-11-22 11:57:27,889 | INFO     | mean x: 1763780302.5047169
[2025-11-22 13:01:53] 2025-11-22 11:57:27,889 | INFO     | mean y: 2320381.7698113206
[2025-11-22 13:01:53] 2025-11-22 11:57:27,889 | INFO     | intersect: -3344689988.9302654
[2025-11-22 13:01:53] 2025-11-22 11:57:27,890 | INFO     | chi2: 2.6261727086626214
[2025-11-22 13:01:53] 2025-11-22 11:57:27,891 | INFO     | current chi2=2.6261727086626214 (change=39.876383295090925 %)
[2025-11-22 13:01:53] 2025-11-22 11:57:27,892 | INFO     | sum of square deviations: 364112503843.985
[2025-11-22 13:01:53] 2025-11-22 11:57:27,916 | INFO     | sum of deviations: 676816050251.9159
[2025-11-22 13:01:53] 2025-11-22 11:57:27,916 | INFO     | mean x: 1763780455.0037916
[2025-11-22 13:01:53] 2025-11-22 11:57:27,916 | INFO     | mean y: 2321085.2710900474
[2025-11-22 13:01:53] 2025-11-22 11:57:27,917 | INFO     | intersect: -3276212083.638412
[2025-11-22 13:01:53] 2025-11-22 11:57:27,918 | INFO     | chi2: 2.619368778831955
[2025-11-22 13:01:53] 2025-11-22 11:57:27,918 | INFO     | current chi2=2.619368778831955 (change=0.2590815831808433 %)
[2025-11-22 13:01:53] 2025-11-22 11:57:27,918 | INFO     | left removable region: 20
[2025-11-22 13:01:53] 2025-11-22 11:57:27,920 | INFO     | sum of square deviations: 342799220750.48486
[2025-11-22 13:01:53] 2025-11-22 11:57:27,942 | INFO     | sum of deviations: 927578567540.7651
[2025-11-22 13:01:53] 2025-11-22 11:57:27,943 | INFO     | mean x: 1763780424.5038686
[2025-11-22 13:01:53] 2025-11-22 11:57:27,943 | INFO     | mean y: 2329668.5589941973
[2025-11-22 13:01:53] 2025-11-22 11:57:27,943 | INFO     | intersect: -4770274294.88052
[2025-11-22 13:01:53] 2025-11-22 11:57:27,944 | INFO     | chi2: 0.182813113423426
[2025-11-22 13:01:53] 2025-11-22 11:57:27,945 | INFO     | current memory leak: 2.71 B/s (using 1034 data points, chi2=0.18)
[2025-11-22 13:01:53] 2025-11-22 11:57:27,946 | INFO     | could have reported an average CPU frequency of 2594 MHz (39 samples)
[2025-11-22 13:01:53] 2025-11-22 11:57:27,946 | INFO     | ..............................
[2025-11-22 13:01:53] 2025-11-22 11:57:27,946 | INFO     | . Timing measurements:
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | . get job = 0 s
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | . initial setup = 1 s
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | . payload setup = 6 s
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | . stage-in = 0 s
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | . payload execution = 64940 s
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | . stage-out = 2 s
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | . log creation = 0 s
[2025-11-22 13:01:53] 2025-11-22 11:57:27,947 | INFO     | ..............................
[2025-11-22 13:01:53] 2025-11-22 11:57:28,049 | INFO     | 
[2025-11-22 13:01:53] 2025-11-22 11:57:28,049 | INFO     | job summary report
[2025-11-22 13:01:53] 2025-11-22 11:57:28,049 | INFO     | --------------------------------------------------
[2025-11-22 13:01:53] 2025-11-22 11:57:28,050 | INFO     | PanDA job id: 6891595454
[2025-11-22 13:01:53] 2025-11-22 11:57:28,050 | INFO     | task id: 47493068
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | errors: (none)
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | pilot state: finished 
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | transexitcode: 0
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | exeerrorcode: 0
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | exeerrordiag: 
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | exitcode: 0
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | exitmsg: OK
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | cpuconsumptiontime: 257362 s
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | nevents: 1000
[2025-11-22 13:01:53] 2025-11-22 11:57:28,051 | INFO     | neventsw: 0
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | pid: 3353220
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | pgrp: 3353220
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | corecount: 4
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | event service: False
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | sizes: {0: 2298636, 1: 2298835, 6: 2299097, 11: 2299125, 64951: 2353763, 64953: 2362779, 64957: 2362963, 64963: 2363209}
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | --------------------------------------------------
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | 
[2025-11-22 13:01:53] 2025-11-22 11:57:28,052 | INFO     | executing command: ls -lF /scratch/boinc/var/slot56/slots/0
[2025-11-22 13:01:53] 2025-11-22 11:57:28,077 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,078 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,079 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 13:01:53] 2025-11-22 11:57:28,080 | INFO     | job 6891595454 has completed (purged errors)
[2025-11-22 13:01:53] 2025-11-22 11:57:28,080 | INFO     | overall cleanup function is called
[2025-11-22 13:01:53] 2025-11-22 11:57:28,111 | INFO     | PID=3345890 has CPU usage=18.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-22 13:01:53] 2025-11-22 11:57:28,111 | INFO     | .. there are 4 such processes running
[2025-11-22 13:01:53] 2025-11-22 11:57:29,098 | INFO     | --- collectZombieJob: --- 10, [3353220]
[2025-11-22 13:01:53] 2025-11-22 11:57:29,098 | INFO     | zombie collector waiting for pid 3353220
[2025-11-22 13:01:53] 2025-11-22 11:57:29,099 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 13:01:53] 2025-11-22 11:57:29,099 | INFO     | collected zombie processes
[2025-11-22 13:01:53] 2025-11-22 11:57:29,099 | INFO     | will attempt to kill all subprocesses of pid=3353220
[2025-11-22 13:01:53] 2025-11-22 11:57:29,495 | INFO     | process IDs to be killed: [3353220] (in reverse order)
[2025-11-22 13:01:53] 2025-11-22 11:57:29,615 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 13:01:53] 2025-11-22 11:57:29,615 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 13:01:53] 2025-11-22 11:57:29,632 | INFO     | did not find any defunct processes belonging to 3353220
[2025-11-22 13:01:53] 2025-11-22 11:57:29,648 | INFO     | did not find any defunct processes belonging to 3353220
[2025-11-22 13:01:53] 2025-11-22 11:57:29,650 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 13:01:53] 2025-11-22 11:57:29,650 | INFO     | ready for new job
[2025-11-22 13:01:53] 2025-11-22 11:57:29,650 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 13:01:53] 2025-11-22 11:57:29,656 | INFO     | ***************************************
[2025-11-22 13:01:53] 2025-11-22 11:57:29,656 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 13:01:53] 2025-11-22 11:57:29,656 | INFO     | ***************************************
[2025-11-22 13:01:53] 2025-11-22 11:57:29,656 | INFO     | 
[2025-11-22 13:01:53] 2025-11-22 11:57:29,660 | INFO     | architecture information:
[2025-11-22 13:01:53] 2025-11-22 11:57:29,661 | INFO     | executing command: cat /etc/os-release
[2025-11-22 13:01:53] 2025-11-22 11:57:29,676 | INFO     | cat /etc/os-release:
[2025-11-22 13:01:53] NAME="CentOS Linux"
[2025-11-22 13:01:53] VERSION="7 (Core)"
[2025-11-22 13:01:53] ID="centos"
[2025-11-22 13:01:53] ID_LIKE="rhel fedora"
[2025-11-22 13:01:53] VERSION_ID="7"
[2025-11-22 13:01:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 13:01:53] ANSI_COLOR="0;31"
[2025-11-22 13:01:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 13:01:53] HOME_URL="https://www.centos.org/"
[2025-11-22 13:01:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 13:01:53] 
[2025-11-22 13:01:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 13:01:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 13:01:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 13:01:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 13:01:53] 
[2025-11-22 13:01:53] 2025-11-22 11:57:29,676 | INFO     | ***************************************
[2025-11-22 13:01:53] 2025-11-22 11:57:30,179 | INFO     | executing command: df -mP /scratch/boinc/var/slot56/slots/0
[2025-11-22 13:01:53] 2025-11-22 11:57:30,196 | INFO     | sufficient remaining disk space (662610903040 B)
[2025-11-22 13:01:53] 2025-11-22 11:57:30,196 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 13:01:53] 2025-11-22 11:57:30,196 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 13:01:53] 2025-11-22 11:57:30,196 | INFO     | update_server=False
[2025-11-22 13:01:53] 2025-11-22 11:57:30,196 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 13:01:53] 2025-11-22 11:57:30,197 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:01:53] 2025-11-22 11:57:30,197 | INFO     | aborting loop
[2025-11-22 13:01:53] 2025-11-22 11:57:30,360 | INFO     | all payload control threads have been joined
[2025-11-22 13:01:53] 2025-11-22 11:57:30,374 | INFO     | all data control threads have been joined
[2025-11-22 13:01:53] 2025-11-22 11:57:31,198 | INFO     | [job] retrieve thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,200 | INFO     | [job] job monitor thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,362 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 13:01:53] 2025-11-22 11:57:31,365 | INFO     | [payload] control thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,379 | INFO     | [data] control thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,384 | INFO     | [data] copytool_in thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,585 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,648 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,796 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,834 | INFO     | [job] validate thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:31,879 | INFO     | all job control threads have been joined
[2025-11-22 13:01:53] 2025-11-22 11:57:31,976 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 13:01:53] 2025-11-22 11:57:32,425 | INFO     | [payload] failed_post thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:32,734 | INFO     | [payload] validate_post thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:32,884 | INFO     | [job] control thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:33,058 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 13:01:53] 2025-11-22 11:57:33,364 | INFO     | [data] copytool_out thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:34,064 | INFO     | [job] queue monitor thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:35,977 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:57:40,677 | INFO     | job.realtimelogging is not enabled
[2025-11-22 13:01:53] 2025-11-22 11:57:41,681 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 13:01:53] 2025-11-22 11:58:00,744 | INFO     | PID=3345890 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 13:01:53] 2025-11-22 11:58:00,746 | INFO     | .. there are 4 such processes running
[2025-11-22 13:01:53] 2025-11-22 11:58:00,746 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 13:01:53] 2025-11-22 11:58:00,746 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 13:01:53] 2025-11-22 11:58:00,746 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 13:01:53] 2025-11-22 11:58:12,872 | INFO     | [monitor] cgroup control has ended
[2025-11-22 13:01:53] 2025-11-22 11:58:14,465 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 22806226773824)>', '<ExcThread(monitor, started 22805978494720)>']
[2025-11-22 13:01:53] 2025-11-22 11:58:14,809 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 13:01:53] 2025-11-22 11:58:14,809 | INFO     | [monitor] control thread has ended
[2025-11-22 13:01:53] 2025-11-22 11:58:19,473 | INFO     | all workflow threads have been joined
[2025-11-22 13:01:53] 2025-11-22 11:58:19,473 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 13:01:53] 2025-11-22 11:58:19,474 | INFO     | traces error code: 0
[2025-11-22 13:01:53] 2025-11-22 11:58:19,474 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 13:01:53] 2025-11-22 11:58:19,643 [wrapper] ==== pilot stdout END ====
[2025-11-22 13:01:53] 2025-11-22 11:58:19,646 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 13:01:53] 2025-11-22 11:58:19,649 [wrapper] pilotpid: 3345890
[2025-11-22 13:01:53] 2025-11-22 11:58:19,652 [wrapper] Pilot exit status: 0
[2025-11-22 13:01:53] 2025-11-22 11:58:19,663 [wrapper] pandaids: 6891595454
[2025-11-22 13:01:53] 2025-11-22 11:58:19,756 [wrapper] cleanup supervisor_pilot   84938 3345891
[2025-11-22 13:01:53] 2025-11-22 11:58:19,759 [wrapper] Test setup, not cleaning
[2025-11-22 13:01:53] 2025-11-22 11:58:19,763 [wrapper] apfmon messages muted
[2025-11-22 13:01:53] 2025-11-22 11:58:19,766 [wrapper] ==== wrapper stdout END ====
[2025-11-22 13:01:53] 2025-11-22 11:58:19,769 [wrapper] ==== wrapper stderr END ====
[2025-11-22 13:01:53]  *** Error codes and diagnostics ***
[2025-11-22 13:01:53]     "exeErrorCode": 0,
[2025-11-22 13:01:53]     "exeErrorDiag": "",
[2025-11-22 13:01:53]     "pilotErrorCode": 0,
[2025-11-22 13:01:53]     "pilotErrorDiag": "",
[2025-11-22 13:01:53]  *** Listing of results directory ***
[2025-11-22 13:01:53] total 1338452
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-22 13:01:53] -rwx------ 1 boinc boinc     36292 Nov 18 19:45 runpilot2-wrapper.sh
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:45 queuedata.json
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc       100 Nov 21 18:54 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 13:01:53] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 18:54 run_atlas
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc       105 Nov 21 18:54 job.xml
[2025-11-22 13:01:53] -rw-r--r-- 2 boinc boinc 412219700 Nov 21 18:54 EVNT.47493065._000770.pool.root.1
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc      6635 Nov 21 18:54 init_data.xml
[2025-11-22 13:01:53] -rw-r--r-- 2 boinc boinc     15120 Nov 21 18:54 start_atlas.sh
[2025-11-22 13:01:53] drwxrwx--x 2 boinc boinc      4096 Nov 21 18:54 shared
[2025-11-22 13:01:53] -rw-r--r-- 2 boinc boinc    590094 Nov 21 18:54 input.tar.gz
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc         0 Nov 21 18:54 boinc_lockfile
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc      2773 Nov 21 18:54 pandaJob.out
[2025-11-22 13:01:53] -rw------- 1 boinc boinc    989817 Nov 21 18:54 agis_schedconf.cvmfs.json
[2025-11-22 13:01:53] drwx------ 5 boinc boinc      4096 Nov 21 18:54 pilot3
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc       531 Nov 22 12:47 boinc_task_state.xml
[2025-11-22 13:01:53] -rw------- 1 boinc boinc 932703351 Nov 22 12:56 HITS.47493068._006344.pool.root.1
[2025-11-22 13:01:53] -rw------- 1 boinc boinc        95 Nov 22 12:57 pilot_heartbeat.json
[2025-11-22 13:01:53] -rw------- 1 boinc boinc      1053 Nov 22 12:57 memory_monitor_summary.json
[2025-11-22 13:01:53] -rw------- 1 boinc boinc   1526164 Nov 22 12:57 agis_ddmendpoints.agis.ALL.json
[2025-11-22 13:01:53] -rw------- 1 boinc boinc   1782563 Nov 22 12:57 log.47493068._006344.job.log.tgz.1
[2025-11-22 13:01:53] -rw------- 1 boinc boinc      8657 Nov 22 12:57 heartbeat.json
[2025-11-22 13:01:53] -rw------- 1 boinc boinc      4905 Nov 22 12:58 pilotlog.txt
[2025-11-22 13:01:53] -rw------- 1 boinc boinc   9080242 Nov 22 12:58 log.47493068._006344.job.log.1
[2025-11-22 13:01:53] -rw------- 1 boinc boinc       353 Nov 22 12:58 output.list
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc       620 Nov 22 12:58 runtime_log
[2025-11-22 13:01:53] -rw------- 1 boinc boinc  10885120 Nov 22 12:58 result.tar.gz
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc      9070 Nov 22 12:58 runtime_log.err
[2025-11-22 13:01:53] -rw------- 1 boinc boinc       672 Nov 22 12:58 QLeNDm3sff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmxJGKDmCyWVYo.diag
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc        28 Nov 22 13:01 wrapper_checkpoint.txt
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc      8192 Nov 22 13:01 boinc_mmap_file
[2025-11-22 13:01:53] -rw-r--r-- 1 boinc boinc     21156 Nov 22 13:01 stderr.txt
[2025-11-22 13:01:53] HITS file was successfully produced:
[2025-11-22 13:01:53] -rw------- 1 boinc boinc 932703351 Nov 22 12:56 shared/HITS.pool.root.1
[2025-11-22 13:01:53]  *** Contents of shared directory: ***
[2025-11-22 13:01:53] total 1324640
[2025-11-22 13:01:53] -rw-r--r-- 2 boinc boinc 412219700 Nov 21 18:54 ATLAS.root_0
[2025-11-22 13:01:53] -rw-r--r-- 2 boinc boinc     15120 Nov 21 18:54 start_atlas.sh
[2025-11-22 13:01:53] -rw-r--r-- 2 boinc boinc    590094 Nov 21 18:54 input.tar.gz
[2025-11-22 13:01:53] -rw------- 1 boinc boinc 932703351 Nov 22 12:56 HITS.pool.root.1
[2025-11-22 13:01:53] -rw------- 1 boinc boinc  10885120 Nov 22 12:58 result.tar.gz
13:01:55 (3341866): run_atlas exited; CPU time 259938.152170
13:01:55 (3341866): called boinc_finish(0)

</stderr_txt>
]]>

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