Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:58:48 (1203999): wrapper (7.7.26015): starting
20:58:48 (1203999): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:58:48] Arguments: --nthreads 8
[2025-11-20 20:58:48] Threads: 8
[2025-11-20 20:58:48] Checking for CVMFS
[2025-11-20 20:58:49] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:58:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:58:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:58:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:58:49] 2.13.3.0 11160 22220 350108 153103 2 747 26996919 32935937 12635 16776704 0 76913798 99.319 128710578 40156 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 20:58:49] CVMFS is ok
[2025-11-20 20:58:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 20:58:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 20:58:49] Further information can be found at the LHC@home message board.
[2025-11-20 20:58:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:58:49] Checking for apptainer binary...
[2025-11-20 20:58:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:58:49] Running /usr/bin/apptainer --version
[2025-11-20 20:58:49] apptainer version 1.4.4-1.el9
[2025-11-20 20:58:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:58:50] c6-2-29-2.aglt2.org
[2025-11-20 20:58:50] apptainer works
[2025-11-20 20:58:50] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:58:50] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:58:50] Starting ATLAS job with PandaID=6891586419
[2025-11-20 20:58:50] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 07:52:08]  *** The last 200 lines of the pilot log: ***
[2025-11-21 07:52:08] 2025-11-21 12:45:29,550 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3224.5987321428584
[2025-11-21 07:52:08] 2025-11-21 12:45:29,560 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891586419/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 07:52:08] 2025-11-21 12:45:29,560 | INFO     | extracted standard info from prmon json
[2025-11-21 07:52:08] 2025-11-21 12:45:29,560 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:52:08] 2025-11-21 12:45:29,560 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:52:08] 2025-11-21 12:45:29,571 | INFO     | fitting pss+swap vs Time
[2025-11-21 07:52:08] 2025-11-21 12:45:29,572 | INFO     | sum of square deviations: 79393207189.08035
[2025-11-21 07:52:08] 2025-11-21 12:45:29,580 | INFO     | sum of deviations: 753741496385.7399
[2025-11-21 07:52:08] 2025-11-21 12:45:29,580 | INFO     | mean x: 1763709770.862992
[2025-11-21 07:52:08] 2025-11-21 12:45:29,580 | INFO     | mean y: 2886848.031496063
[2025-11-21 07:52:08] 2025-11-21 12:45:29,580 | INFO     | intersect: -16741382453.42662
[2025-11-21 07:52:08] 2025-11-21 12:45:29,581 | INFO     | chi2: 6.844158043708283
[2025-11-21 07:52:08] 2025-11-21 12:45:29,582 | INFO     | sum of square deviations: 77532604552.82687
[2025-11-21 07:52:08] 2025-11-21 12:45:29,589 | INFO     | sum of deviations: 953578453954.0454
[2025-11-21 07:52:08] 2025-11-21 12:45:29,589 | INFO     | mean x: 1763709618.3698413
[2025-11-21 07:52:08] 2025-11-21 12:45:29,589 | INFO     | mean y: 2903214.3603174603
[2025-11-21 07:52:08] 2025-11-21 12:45:29,590 | INFO     | intersect: -21689073997.150402
[2025-11-21 07:52:08] 2025-11-21 12:45:29,590 | INFO     | chi2: 3.9783607827975564
[2025-11-21 07:52:08] 2025-11-21 12:45:29,590 | INFO     | current chi2=3.9783607827975564 (change=41.87216663626295 %)
[2025-11-21 07:52:08] 2025-11-21 12:45:29,591 | INFO     | sum of square deviations: 75701304791.51361
[2025-11-21 07:52:08] 2025-11-21 12:45:29,599 | INFO     | sum of deviations: 988792913672.6725
[2025-11-21 07:52:08] 2025-11-21 12:45:29,599 | INFO     | mean x: 1763709465.8768
[2025-11-21 07:52:08] 2025-11-21 12:45:29,599 | INFO     | mean y: 2906128.736
[2025-11-21 07:52:08] 2025-11-21 12:45:29,599 | INFO     | intersect: -23034258507.18843
[2025-11-21 07:52:08] 2025-11-21 12:45:29,600 | INFO     | chi2: 3.6658476318261086
[2025-11-21 07:52:08] 2025-11-21 12:45:29,600 | INFO     | current chi2=3.6658476318261086 (change=7.855324542780423 %)
[2025-11-21 07:52:08] 2025-11-21 12:45:29,600 | INFO     | right removable region: 624
[2025-11-21 07:52:08] 2025-11-21 12:45:29,601 | INFO     | sum of square deviations: 77532270272.82686
[2025-11-21 07:52:08] 2025-11-21 12:45:29,608 | INFO     | sum of deviations: 522627696975.44525
[2025-11-21 07:52:08] 2025-11-21 12:45:29,608 | INFO     | mean x: 1763709923.3698413
[2025-11-21 07:52:08] 2025-11-21 12:45:29,608 | INFO     | mean y: 2905773.5603174604
[2025-11-21 07:52:08] 2025-11-21 12:45:29,608 | INFO     | intersect: -11885868438.002716
[2025-11-21 07:52:08] 2025-11-21 12:45:29,609 | INFO     | chi2: 3.376926509658873
[2025-11-21 07:52:08] 2025-11-21 12:45:29,609 | INFO     | current chi2=3.376926509658873 (change=50.65972340070049 %)
[2025-11-21 07:52:08] 2025-11-21 12:45:29,610 | INFO     | sum of square deviations: 75700828385.24164
[2025-11-21 07:52:08] 2025-11-21 12:45:29,617 | INFO     | sum of deviations: 475718244271.1351
[2025-11-21 07:52:08] 2025-11-21 12:45:29,617 | INFO     | mean x: 1763710075.8688
[2025-11-21 07:52:08] 2025-11-21 12:45:29,617 | INFO     | mean y: 2909677.648
[2025-11-21 07:52:08] 2025-11-21 12:45:29,617 | INFO     | intersect: -11080576178.356052
[2025-11-21 07:52:08] 2025-11-21 12:45:29,618 | INFO     | chi2: 3.3016144852273306
[2025-11-21 07:52:08] 2025-11-21 12:45:29,618 | INFO     | current chi2=3.3016144852273306 (change=2.230194356203215 %)
[2025-11-21 07:52:08] 2025-11-21 12:45:29,618 | INFO     | left removable region: 20
[2025-11-21 07:52:08] 2025-11-21 12:45:29,619 | INFO     | sum of square deviations: 68323664543.117615
[2025-11-21 07:52:08] 2025-11-21 12:45:29,626 | INFO     | sum of deviations: 651828854382.891
[2025-11-21 07:52:08] 2025-11-21 12:45:29,626 | INFO     | mean x: 1763710045.3857615
[2025-11-21 07:52:08] 2025-11-21 12:45:29,626 | INFO     | mean y: 2934273.8245033114
[2025-11-21 07:52:08] 2025-11-21 12:45:29,626 | INFO     | intersect: -16823404097.149233
[2025-11-21 07:52:08] 2025-11-21 12:45:29,627 | INFO     | chi2: 0.049190153196887354
[2025-11-21 07:52:08] 2025-11-21 12:45:29,627 | INFO     | current memory leak: 9.54 B/s (using 604 data points, chi2=0.05)
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | could have reported an average CPU frequency of 3060 MHz (25 samples)
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | ..............................
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . Timing measurements:
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . get job = 0 s
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . initial setup = 4 s
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . payload setup = 24 s
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . stage-in = 0 s
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . payload execution = 38693 s
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . stage-out = 3 s
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | . log creation = 0 s
[2025-11-21 07:52:08] 2025-11-21 12:45:29,628 | INFO     | ..............................
[2025-11-21 07:52:08] 2025-11-21 12:45:30,004 | INFO     | 
[2025-11-21 07:52:08] 2025-11-21 12:45:30,004 | INFO     | job summary report
[2025-11-21 07:52:08] 2025-11-21 12:45:30,004 | INFO     | --------------------------------------------------
[2025-11-21 07:52:08] 2025-11-21 12:45:30,004 | INFO     | PanDA job id: 6891586419
[2025-11-21 07:52:08] 2025-11-21 12:45:30,004 | INFO     | task id: 47493068
[2025-11-21 07:52:08] 2025-11-21 12:45:30,005 | INFO     | errors: (none)
[2025-11-21 07:52:08] 2025-11-21 12:45:30,005 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 07:52:08] 2025-11-21 12:45:30,005 | INFO     | pilot state: finished 
[2025-11-21 07:52:08] 2025-11-21 12:45:30,005 | INFO     | transexitcode: 0
[2025-11-21 07:52:08] 2025-11-21 12:45:30,005 | INFO     | exeerrorcode: 0
[2025-11-21 07:52:08] 2025-11-21 12:45:30,005 | INFO     | exeerrordiag: 
[2025-11-21 07:52:08] 2025-11-21 12:45:30,005 | INFO     | exitcode: 0
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | exitmsg: OK
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | cpuconsumptiontime: 225562 s
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | nevents: 1000
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | neventsw: 0
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | pid: 1216637
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | pgrp: 1216637
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | corecount: 8
[2025-11-21 07:52:08] 2025-11-21 12:45:30,006 | INFO     | event service: False
[2025-11-21 07:52:08] 2025-11-21 12:45:30,007 | INFO     | sizes: {0: 2298619, 1: 2298818, 12: 2298818, 14: 2299108, 23: 2299136, 38721: 2342776, 38726: 2351826, 38733: 2352080}
[2025-11-21 07:52:08] 2025-11-21 12:45:30,007 | INFO     | --------------------------------------------------
[2025-11-21 07:52:08] 2025-11-21 12:45:30,007 | INFO     | 
[2025-11-21 07:52:08] 2025-11-21 12:45:30,007 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 07:52:08] 2025-11-21 12:45:30,025 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,025 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,026 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,026 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,026 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,026 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,026 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,026 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,027 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,028 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 07:52:08] 2025-11-21 12:45:30,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,028 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 07:52:08] 2025-11-21 12:45:30,028 | INFO     | job 6891586419 has completed (purged errors)
[2025-11-21 07:52:08] 2025-11-21 12:45:30,028 | INFO     | overall cleanup function is called
[2025-11-21 07:52:08] 2025-11-21 12:45:30,084 | INFO     | PID=1208273 has CPU usage=13.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-21 07:52:08] 2025-11-21 12:45:30,084 | INFO     | .. there are 15 such processes running
[2025-11-21 07:52:08] 2025-11-21 12:45:31,046 | INFO     | --- collectZombieJob: --- 10, [1216637]
[2025-11-21 07:52:08] 2025-11-21 12:45:31,046 | INFO     | zombie collector waiting for pid 1216637
[2025-11-21 07:52:08] 2025-11-21 12:45:31,046 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 07:52:08] 2025-11-21 12:45:31,046 | INFO     | collected zombie processes
[2025-11-21 07:52:08] 2025-11-21 12:45:31,046 | INFO     | will attempt to kill all subprocesses of pid=1216637
[2025-11-21 07:52:08] 2025-11-21 12:45:31,344 | INFO     | process IDs to be killed: [1216637] (in reverse order)
[2025-11-21 07:52:08] 2025-11-21 12:45:31,442 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 07:52:08] 2025-11-21 12:45:31,442 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 07:52:08] 2025-11-21 12:45:31,453 | INFO     | did not find any defunct processes belonging to 1216637
[2025-11-21 07:52:08] 2025-11-21 12:45:31,463 | INFO     | did not find any defunct processes belonging to 1216637
[2025-11-21 07:52:08] 2025-11-21 12:45:31,464 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 07:52:08] 2025-11-21 12:45:31,464 | INFO     | ready for new job
[2025-11-21 07:52:08] 2025-11-21 12:45:31,464 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 07:52:08] 2025-11-21 12:45:31,467 | INFO     | ***************************************
[2025-11-21 07:52:08] 2025-11-21 12:45:31,467 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 07:52:08] 2025-11-21 12:45:31,467 | INFO     | ***************************************
[2025-11-21 07:52:08] 2025-11-21 12:45:31,467 | INFO     | 
[2025-11-21 07:52:08] 2025-11-21 12:45:31,470 | INFO     | architecture information:
[2025-11-21 07:52:08] 2025-11-21 12:45:31,471 | INFO     | executing command: cat /etc/os-release
[2025-11-21 07:52:08] 2025-11-21 12:45:31,485 | INFO     | cat /etc/os-release:
[2025-11-21 07:52:08] NAME="CentOS Linux"
[2025-11-21 07:52:08] VERSION="7 (Core)"
[2025-11-21 07:52:08] ID="centos"
[2025-11-21 07:52:08] ID_LIKE="rhel fedora"
[2025-11-21 07:52:08] VERSION_ID="7"
[2025-11-21 07:52:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 07:52:08] ANSI_COLOR="0;31"
[2025-11-21 07:52:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 07:52:08] HOME_URL="https://www.centos.org/"
[2025-11-21 07:52:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 07:52:08] 
[2025-11-21 07:52:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 07:52:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 07:52:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 07:52:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 07:52:08] 
[2025-11-21 07:52:08] 2025-11-21 12:45:31,485 | INFO     | ***************************************
[2025-11-21 07:52:08] 2025-11-21 12:45:31,988 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 07:52:08] 2025-11-21 12:45:32,002 | INFO     | sufficient remaining disk space (66792194048 B)
[2025-11-21 07:52:08] 2025-11-21 12:45:32,003 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 07:52:08] 2025-11-21 12:45:32,003 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 07:52:08] 2025-11-21 12:45:32,003 | INFO     | update_server=False
[2025-11-21 07:52:08] 2025-11-21 12:45:32,003 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 07:52:08] 2025-11-21 12:45:32,024 | INFO     | all job control threads have been joined
[2025-11-21 07:52:08] 2025-11-21 12:45:32,122 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:52:08] 2025-11-21 12:45:32,122 | INFO     | aborting loop
[2025-11-21 07:52:08] 2025-11-21 12:45:32,536 | INFO     | all payload control threads have been joined
[2025-11-21 07:52:08] 2025-11-21 12:45:32,878 | INFO     | all data control threads have been joined
[2025-11-21 07:52:08] 2025-11-21 12:45:33,009 | INFO     | [job] retrieve thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,032 | INFO     | [job] control thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,127 | INFO     | [job] job monitor thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,426 | INFO     | [data] copytool_in thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,435 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 07:52:08] 2025-11-21 12:45:33,509 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 07:52:08] 2025-11-21 12:45:33,541 | INFO     | [payload] control thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,792 | INFO     | [payload] validate_post thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,864 | INFO     | [job] validate thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,872 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,884 | INFO     | [data] control thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:33,982 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:34,122 | INFO     | [payload] failed_post thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:34,317 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:34,731 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:52:08] 2025-11-21 12:45:35,441 | INFO     | [data] copytool_out thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:35,737 | INFO     | [job] queue monitor thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:37,518 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:45:42,885 | INFO     | job.realtimelogging is not enabled
[2025-11-21 07:52:08] 2025-11-21 12:45:43,890 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 07:52:08] 2025-11-21 12:46:01,147 | INFO     | 38770s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-21 07:52:08] 2025-11-21 12:46:02,495 | INFO     | PID=1208273 has CPU usage=2.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:52:08] 2025-11-21 12:46:02,495 | INFO     | .. there are 15 such processes running
[2025-11-21 07:52:08] 2025-11-21 12:46:02,495 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 07:52:08] 2025-11-21 12:46:02,495 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 07:52:08] 2025-11-21 12:46:02,495 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 07:52:08] 2025-11-21 12:46:30,496 | INFO     | [monitor] cgroup control has ended
[2025-11-21 07:52:08] 2025-11-21 12:46:31,847 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139885112022848)>', '<ExcThread(monitor, started 139884400473856)>']
[2025-11-21 07:52:08] 2025-11-21 12:46:32,654 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 07:52:08] 2025-11-21 12:46:32,654 | INFO     | [monitor] control thread has ended
[2025-11-21 07:52:08] 2025-11-21 12:46:36,873 | INFO     | all workflow threads have been joined
[2025-11-21 07:52:08] 2025-11-21 12:46:36,873 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 07:52:08] 2025-11-21 12:46:36,873 | INFO     | traces error code: 0
[2025-11-21 07:52:08] 2025-11-21 12:46:36,873 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 07:52:08] 2025-11-21 12:46:36,999 [wrapper] ==== pilot stdout END ====
[2025-11-21 07:52:08] 2025-11-21 12:46:37,001 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 07:52:08] 2025-11-21 12:46:37,003 [wrapper] pilotpid: 1208273
[2025-11-21 07:52:08] 2025-11-21 12:46:37,005 [wrapper] Pilot exit status: 0
[2025-11-21 07:52:08] 2025-11-21 12:46:37,013 [wrapper] pandaids: 6891586419
[2025-11-21 07:52:08] 2025-11-21 12:46:37,069 [wrapper] cleanup supervisor_pilot 3047837 1208274
[2025-11-21 07:52:08] 2025-11-21 12:46:37,072 [wrapper] Test setup, not cleaning
[2025-11-21 07:52:08] 2025-11-21 12:46:37,074 [wrapper] apfmon messages muted
[2025-11-21 07:52:08] 2025-11-21 12:46:37,076 [wrapper] ==== wrapper stdout END ====
[2025-11-21 07:52:08] 2025-11-21 12:46:37,079 [wrapper] ==== wrapper stderr END ====
[2025-11-21 07:52:08]  *** Error codes and diagnostics ***
[2025-11-21 07:52:08]     "exeErrorCode": 0,
[2025-11-21 07:52:08]     "exeErrorDiag": "",
[2025-11-21 07:52:08]     "pilotErrorCode": 0,
[2025-11-21 07:52:08]     "pilotErrorDiag": "",
[2025-11-21 07:52:08]  *** Listing of results directory ***
[2025-11-21 07:52:08] total 1300004
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:24 pilot3.tar.gz
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:27 queuedata.json
[2025-11-21 07:52:08] -rwx------. 1 boincer umatlas     36292 Nov 18 12:28 runpilot2-wrapper.sh
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas       100 Nov 20 20:58 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 07:52:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 20:58 run_atlas
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas       105 Nov 20 20:58 job.xml
[2025-11-21 07:52:08] -rw-r--r--. 2 boincer umatlas 409635249 Nov 20 20:58 EVNT.47493065._000490.pool.root.1
[2025-11-21 07:52:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 20:58 shared
[2025-11-21 07:52:08] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 20:58 input.tar.gz
[2025-11-21 07:52:08] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 20:58 start_atlas.sh
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas         0 Nov 20 20:58 boinc_lockfile
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas      2770 Nov 20 20:58 pandaJob.out
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas    989817 Nov 20 20:59 agis_schedconf.cvmfs.json
[2025-11-21 07:52:08] drwx------. 5 boincer umatlas      4096 Nov 20 20:59 pilot3
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas       533 Nov 21 07:37 boinc_task_state.xml
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas 903267220 Nov 21 07:44 HITS.47493068._004891.pool.root.1
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas        95 Nov 21 07:45 pilot_heartbeat.json
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas      1051 Nov 21 07:45 memory_monitor_summary.json
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas   1526164 Nov 21 07:45 agis_ddmendpoints.agis.ALL.json
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas   1889274 Nov 21 07:45 log.47493068._004891.job.log.tgz.1
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas      8620 Nov 21 07:45 heartbeat.json
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas      5012 Nov 21 07:46 pilotlog.txt
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas   5304081 Nov 21 07:46 log.47493068._004891.job.log.1
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas       353 Nov 21 07:46 output.list
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas       620 Nov 21 07:46 runtime_log
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas   7208960 Nov 21 07:46 result.tar.gz
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas      8709 Nov 21 07:46 runtime_log.err
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas       662 Nov 21 07:46 BUBODm9fef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmR3FKDmlM34tn.diag
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas      6847 Nov 21 07:48 init_data.xml
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas        29 Nov 21 07:52 wrapper_checkpoint.txt
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 07:52 boinc_mmap_file
[2025-11-21 07:52:08] -rw-r--r--. 1 boincer umatlas     21403 Nov 21 07:52 stderr.txt
[2025-11-21 07:52:08] HITS file was successfully produced:
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas 903267220 Nov 21 07:44 shared/HITS.pool.root.1
[2025-11-21 07:52:08]  *** Contents of shared directory: ***
[2025-11-21 07:52:08] total 1289776
[2025-11-21 07:52:08] -rw-r--r--. 2 boincer umatlas 409635249 Nov 20 20:58 ATLAS.root_0
[2025-11-21 07:52:08] -rw-r--r--. 2 boincer umatlas    590102 Nov 20 20:58 input.tar.gz
[2025-11-21 07:52:08] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 20:58 start_atlas.sh
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas 903267220 Nov 21 07:44 HITS.pool.root.1
[2025-11-21 07:52:08] -rw-------. 1 boincer umatlas   7208960 Nov 21 07:46 result.tar.gz
07:52:29 (1203999): run_atlas exited; CPU time 226280.023515
07:52:29 (1203999): called boinc_finish(0)

</stderr_txt>
]]>

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