Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
16:47:44 (2138610): wrapper (7.7.26015): starting
16:47:44 (2138610): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 16:47:44] Arguments: --nthreads 8
[2025-11-19 16:47:44] Threads: 8
[2025-11-19 16:47:44] Checking for CVMFS
[2025-11-19 16:47:45] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 16:47:46] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 16:47:46] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 16:47:46] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 16:47:46] 2.13.3.0 44796 20388 328948 153057 1 771 26388907 32947200 26270 16776704 0 77588973 99.429 109079990 35124 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-19 16:47:46] CVMFS is ok
[2025-11-19 16:47:46] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 16:47:46] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 16:47:46] Further information can be found at the LHC@home message board.
[2025-11-19 16:47:46] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 16:47:46] Checking for apptainer binary...
[2025-11-19 16:47:46] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 16:47:46] Running /usr/bin/apptainer --version
[2025-11-19 16:47:47] apptainer version 1.4.4-1.el9
[2025-11-19 16:47:47] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 16:47:47] c6-6-8-2.aglt2.org
[2025-11-19 16:47:47] apptainer works
[2025-11-19 16:47:47] Set ATHENA_PROC_NUMBER=8
[2025-11-19 16:47:47] Set ATHENA_CORE_NUMBER=8
[2025-11-19 16:47:47] Starting ATLAS job with PandaID=6891572710
[2025-11-19 16:47:47] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 21:13:58]  *** The last 200 lines of the pilot log: ***
[2025-11-20 21:13:58] 2025-11-21 02:12:44,059 | INFO     | monitor loop #5993: job 0:6891572710 is in state 'finished'
[2025-11-20 21:13:58] 2025-11-21 02:12:44,060 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:13:58] 2025-11-21 02:12:45,063 | INFO     | PID=2143147 has CPU usage=3.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 21:13:58] 2025-11-21 02:12:45,063 | INFO     | .. there are 34 such processes running
[2025-11-20 21:13:58] 2025-11-21 02:12:46,065 | INFO     | time since job start (102240s) is within the limit (172800.0s)
[2025-11-20 21:13:58] 2025-11-21 02:12:46,568 | INFO     | monitor loop #5994: job 0:6891572710 is in state 'finished'
[2025-11-20 21:13:58] 2025-11-21 02:12:46,569 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:13:58] 2025-11-21 02:12:48,073 | INFO     | time since job start (102242s) is within the limit (172800.0s)
[2025-11-20 21:13:58] 2025-11-21 02:12:49,073 | INFO     | monitor loop #5995: job 0:6891572710 is in state 'finished'
[2025-11-20 21:13:58] 2025-11-21 02:12:49,074 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:13:58] 2025-11-21 02:12:50,083 | INFO     | time since job start (102244s) is within the limit (172800.0s)
[2025-11-20 21:13:58] 2025-11-21 02:12:51,585 | INFO     | monitor loop #5996: job 0:6891572710 is in state 'finished'
[2025-11-20 21:13:58] 2025-11-21 02:12:51,586 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:13:58] 2025-11-21 02:12:52,092 | INFO     | time since job start (102246s) is within the limit (172800.0s)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,024 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 21:13:58] 2025-11-21 02:12:54,051 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2542.111229166667
[2025-11-20 21:13:58] 2025-11-21 02:12:54,086 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891572710/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,091 | INFO     | extracted standard info from prmon json
[2025-11-20 21:13:58] 2025-11-21 02:12:54,091 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 21:13:58] 2025-11-21 02:12:54,091 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 21:13:58] 2025-11-21 02:12:54,149 | INFO     | fitting pss+swap vs Time
[2025-11-20 21:13:58] 2025-11-21 02:12:54,156 | INFO     | sum of square deviations: 1454571651540.3838
[2025-11-20 21:13:58] 2025-11-21 02:12:54,162 | INFO     | monitor loop #5997: job 0:6891572710 is in state 'finished'
[2025-11-20 21:13:58] 2025-11-21 02:12:54,163 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,163 | INFO     | time since job start (102248s) is within the limit (172800.0s)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,270 | INFO     | sum of deviations: 7033618668484.605
[2025-11-20 21:13:58] 2025-11-21 02:12:54,271 | INFO     | mean x: 1763640082.0310633
[2025-11-20 21:13:58] 2025-11-21 02:12:54,271 | INFO     | mean y: 2905823.5268817204
[2025-11-20 21:13:58] 2025-11-21 02:12:54,271 | INFO     | intersect: -8525221197.458862
[2025-11-20 21:13:58] 2025-11-21 02:12:54,277 | INFO     | chi2: 21.84351673178315
[2025-11-20 21:13:58] 2025-11-21 02:12:54,280 | INFO     | sum of square deviations: 1441577547078.9092
[2025-11-20 21:13:58] 2025-11-21 02:12:54,398 | INFO     | sum of deviations: 7607481152893.155
[2025-11-20 21:13:58] 2025-11-21 02:12:54,398 | INFO     | mean x: 1763639929.5374477
[2025-11-20 21:13:58] 2025-11-21 02:12:54,398 | INFO     | mean y: 2912557.3654883164
[2025-11-20 21:13:58] 2025-11-21 02:12:54,398 | INFO     | intersect: -9304153546.454409
[2025-11-20 21:13:58] 2025-11-21 02:12:54,404 | INFO     | chi2: 18.491425972530614
[2025-11-20 21:13:58] 2025-11-21 02:12:54,405 | INFO     | current chi2=18.491425972530614 (change=15.345929872066419 %)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,405 | INFO     | right removable region: 1668
[2025-11-20 21:13:58] 2025-11-21 02:12:54,407 | INFO     | sum of square deviations: 1441575166730.7563
[2025-11-20 21:13:58] 2025-11-21 02:12:54,522 | INFO     | sum of deviations: 6371291069486.869
[2025-11-20 21:13:58] 2025-11-21 02:12:54,522 | INFO     | mean x: 1763640234.538646
[2025-11-20 21:13:58] 2025-11-21 02:12:54,522 | INFO     | mean y: 2913594.854403835
[2025-11-20 21:13:58] 2025-11-21 02:12:54,522 | INFO     | intersect: -7791799809.91839
[2025-11-20 21:13:58] 2025-11-21 02:12:54,529 | INFO     | chi2: 17.935876858536897
[2025-11-20 21:13:58] 2025-11-21 02:12:54,529 | INFO     | current chi2=17.935876858536897 (change=17.889243390742518 %)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,529 | INFO     | left removable region: 10
[2025-11-20 21:13:58] 2025-11-21 02:12:54,531 | INFO     | sum of square deviations: 1413258726417.118
[2025-11-20 21:13:58] 2025-11-21 02:12:54,649 | INFO     | sum of deviations: 6522749430281.257
[2025-11-20 21:13:58] 2025-11-21 02:12:54,649 | INFO     | mean x: 1763640204.0542822
[2025-11-20 21:13:58] 2025-11-21 02:12:54,649 | INFO     | mean y: 2927994.5416164054
[2025-11-20 21:13:58] 2025-11-21 02:12:54,649 | INFO     | intersect: -8136970893.880949
[2025-11-20 21:13:58] 2025-11-21 02:12:54,655 | INFO     | chi2: 11.538349626986522
[2025-11-20 21:13:58] 2025-11-21 02:12:54,656 | INFO     | current memory leak: 4.62 B/s (using 1658 data points, chi2=11.54)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,658 | INFO     | could have reported an average CPU frequency of 2547 MHz (59 samples)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,658 | INFO     | ..............................
[2025-11-20 21:13:58] 2025-11-21 02:12:54,658 | INFO     | . Timing measurements:
[2025-11-20 21:13:58] 2025-11-21 02:12:54,658 | INFO     | . get job = 0 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,658 | INFO     | . initial setup = 6 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,658 | INFO     | . payload setup = 41 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,662 | INFO     | . stage-in = 0 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,663 | INFO     | . payload execution = 102098 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,663 | INFO     | . stage-out = 9 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,663 | INFO     | . log creation = 2 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,663 | INFO     | ..............................
[2025-11-20 21:13:58] 2025-11-21 02:12:54,870 | INFO     | 
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | job summary report
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | --------------------------------------------------
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | PanDA job id: 6891572710
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | task id: 47493068
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | errors: (none)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | pilot state: finished 
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | transexitcode: 0
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | exeerrorcode: 0
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | exeerrordiag: 
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | exitcode: 0
[2025-11-20 21:13:58] 2025-11-21 02:12:54,871 | INFO     | exitmsg: OK
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | cpuconsumptiontime: 287684 s
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | nevents: 1000
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | neventsw: 0
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | pid: 2156398
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | pgrp: 2156398
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | corecount: 8
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | event service: False
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | sizes: {0: 2297029, 1: 2297228, 2: 2297228, 13: 2297256, 23: 2297312, 32: 2297602, 34: 2297758, 102145: 2368613, 102155: 2379203, 102156: 2379259, 102190: 2379505}
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | --------------------------------------------------
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | 
[2025-11-20 21:13:58] 2025-11-21 02:12:54,872 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-20 21:13:58] 2025-11-21 02:12:54,970 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,970 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,970 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,972 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,972 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,972 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,973 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,978 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,978 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,978 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,978 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,978 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 21:13:58] 2025-11-21 02:12:54,978 | INFO     | job 6891572710 has completed (purged errors)
[2025-11-20 21:13:58] 2025-11-21 02:12:54,978 | INFO     | overall cleanup function is called
[2025-11-20 21:13:58] 2025-11-21 02:12:56,011 | INFO     | --- collectZombieJob: --- 10, [2156398]
[2025-11-20 21:13:58] 2025-11-21 02:12:56,012 | INFO     | zombie collector waiting for pid 2156398
[2025-11-20 21:13:58] 2025-11-21 02:12:56,012 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 21:13:58] 2025-11-21 02:12:56,012 | INFO     | collected zombie processes
[2025-11-20 21:13:58] 2025-11-21 02:12:56,012 | INFO     | will attempt to kill all subprocesses of pid=2156398
[2025-11-20 21:13:58] 2025-11-21 02:12:56,586 | INFO     | process IDs to be killed: [2156398] (in reverse order)
[2025-11-20 21:13:58] 2025-11-21 02:12:57,131 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 21:13:58] 2025-11-21 02:12:57,131 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 21:13:58] 2025-11-21 02:12:57,162 | INFO     | did not find any defunct processes belonging to 2156398
[2025-11-20 21:13:58] 2025-11-21 02:12:57,200 | INFO     | did not find any defunct processes belonging to 2156398
[2025-11-20 21:13:58] 2025-11-21 02:12:57,206 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 21:13:58] 2025-11-21 02:12:57,207 | INFO     | ready for new job
[2025-11-20 21:13:58] 2025-11-21 02:12:57,207 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 21:13:58] 2025-11-21 02:12:57,222 | INFO     | ***************************************
[2025-11-20 21:13:58] 2025-11-21 02:12:57,222 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 21:13:58] 2025-11-21 02:12:57,222 | INFO     | ***************************************
[2025-11-20 21:13:58] 2025-11-21 02:12:57,222 | INFO     | 
[2025-11-20 21:13:58] 2025-11-21 02:12:57,232 | INFO     | architecture information:
[2025-11-20 21:13:58] 2025-11-21 02:12:57,239 | INFO     | executing command: cat /etc/os-release
[2025-11-20 21:13:58] 2025-11-21 02:12:57,315 | INFO     | cat /etc/os-release:
[2025-11-20 21:13:58] NAME="CentOS Linux"
[2025-11-20 21:13:58] VERSION="7 (Core)"
[2025-11-20 21:13:58] ID="centos"
[2025-11-20 21:13:58] ID_LIKE="rhel fedora"
[2025-11-20 21:13:58] VERSION_ID="7"
[2025-11-20 21:13:58] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 21:13:58] ANSI_COLOR="0;31"
[2025-11-20 21:13:58] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 21:13:58] HOME_URL="https://www.centos.org/"
[2025-11-20 21:13:58] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 21:13:58] 
[2025-11-20 21:13:58] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 21:13:58] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 21:13:58] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 21:13:58] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 21:13:58] 
[2025-11-20 21:13:58] 2025-11-21 02:12:57,315 | INFO     | ***************************************
[2025-11-20 21:13:58] 2025-11-21 02:12:57,819 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-20 21:13:58] 2025-11-21 02:12:57,875 | INFO     | sufficient remaining disk space (67664609280 B)
[2025-11-20 21:13:58] 2025-11-21 02:12:57,875 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 21:13:58] 2025-11-21 02:12:57,875 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 21:13:58] 2025-11-21 02:12:57,876 | INFO     | update_server=False
[2025-11-20 21:13:58] 2025-11-21 02:12:57,876 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 21:13:58] 2025-11-21 02:12:57,876 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:13:58] 2025-11-21 02:12:57,876 | INFO     | aborting loop
[2025-11-20 21:13:58] 2025-11-21 02:12:58,171 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 21:13:58] 2025-11-21 02:12:58,223 | INFO     | all job control threads have been joined
[2025-11-20 21:13:58] 2025-11-21 02:12:58,787 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 21:13:58] 2025-11-21 02:12:58,815 | INFO     | all data control threads have been joined
[2025-11-20 21:13:58] 2025-11-21 02:12:58,882 | INFO     | [job] retrieve thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:58,882 | INFO     | [job] job monitor thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,013 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,058 | INFO     | all payload control threads have been joined
[2025-11-20 21:13:58] 2025-11-21 02:12:59,074 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,229 | INFO     | [job] control thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,402 | INFO     | [payload] failed_post thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,533 | INFO     | [data] copytool_in thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,533 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,786 | INFO     | [payload] validate_post thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,797 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,822 | INFO     | [data] control thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,836 | INFO     | [job] validate thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:12:59,885 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 21:13:58] 2025-11-21 02:13:00,065 | INFO     | [payload] control thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:13:00,181 | INFO     | [data] copytool_out thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:13:00,891 | INFO     | [job] queue monitor thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:13:02,798 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 21:13:58] 2025-11-21 02:13:28,691 | INFO     | PID=2143147 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 21:13:58] 2025-11-21 02:13:28,691 | INFO     | .. there are 34 such processes running
[2025-11-20 21:13:58] 2025-11-21 02:13:28,691 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 21:13:58] 2025-11-21 02:13:28,692 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 21:13:58] 2025-11-21 02:13:28,692 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 21:13:58] 2025-11-21 02:13:50,849 | INFO     | [monitor] cgroup control has ended
[2025-11-20 21:13:58] 2025-11-21 02:13:52,275 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139788545537856)>', '<ExcThread(monitor, started 139787822425856)>']
[2025-11-20 21:13:58] 2025-11-21 02:13:52,849 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 21:13:58] 2025-11-21 02:13:52,850 | INFO     | [monitor] control thread has ended
[2025-11-20 21:13:58] 2025-11-21 02:13:57,300 | INFO     | all workflow threads have been joined
[2025-11-20 21:13:58] 2025-11-21 02:13:57,301 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 21:13:58] 2025-11-21 02:13:57,301 | INFO     | traces error code: 0
[2025-11-20 21:13:58] 2025-11-21 02:13:57,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 21:13:58] 2025-11-21 02:13:57,565 [wrapper] ==== pilot stdout END ====
[2025-11-20 21:13:58] 2025-11-21 02:13:57,581 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 21:13:58] 2025-11-21 02:13:57,595 [wrapper] pilotpid: 2143147
[2025-11-20 21:13:58] 2025-11-21 02:13:57,598 [wrapper] Pilot exit status: 0
[2025-11-20 21:13:58] 2025-11-21 02:13:57,701 [wrapper] pandaids: 6891572710
[2025-11-20 21:13:58] 2025-11-21 02:13:57,853 [wrapper] cleanup supervisor_pilot 3225561 2143148
[2025-11-20 21:13:58] 2025-11-21 02:13:57,867 [wrapper] Test setup, not cleaning
[2025-11-20 21:13:58] 2025-11-21 02:13:57,899 [wrapper] apfmon messages muted
[2025-11-20 21:13:58] 2025-11-21 02:13:57,921 [wrapper] ==== wrapper stdout END ====
[2025-11-20 21:13:58] 2025-11-21 02:13:57,961 [wrapper] ==== wrapper stderr END ====
[2025-11-20 21:13:58]  *** Error codes and diagnostics ***
[2025-11-20 21:13:58]     "exeErrorCode": 0,
[2025-11-20 21:13:58]     "exeErrorDiag": "",
[2025-11-20 21:13:58]     "pilotErrorCode": 0,
[2025-11-20 21:13:58]     "pilotErrorDiag": "",
[2025-11-20 21:13:58]  *** Listing of results directory ***
[2025-11-20 21:13:58] total 1328488
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 11:24 pilot3.tar.gz
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 11:28 queuedata.json
[2025-11-20 21:13:58] -rwx------ 1 boincer umatlas     36292 Nov 18 11:29 runpilot2-wrapper.sh
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas       100 Nov 19 16:47 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 21:13:58] -rwxr-xr-x 1 boincer umatlas      7986 Nov 19 16:47 run_atlas
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas       105 Nov 19 16:47 job.xml
[2025-11-20 21:13:58] -rw-r--r-- 2 boincer umatlas 407864107 Nov 19 16:47 EVNT.47493065._000349.pool.root.1
[2025-11-20 21:13:58] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 16:47 start_atlas.sh
[2025-11-20 21:13:58] drwxrwx--x 2 boincer umatlas      4096 Nov 19 16:47 shared
[2025-11-20 21:13:58] -rw-r--r-- 2 boincer umatlas    590094 Nov 19 16:47 input.tar.gz
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas         0 Nov 19 16:47 boinc_lockfile
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas      2773 Nov 19 16:47 pandaJob.out
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas    989443 Nov 19 16:48 agis_schedconf.cvmfs.json
[2025-11-20 21:13:58] drwx------ 5 boincer umatlas      4096 Nov 19 16:48 pilot3
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas       533 Nov 20 20:46 boinc_task_state.xml
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas 917986629 Nov 20 21:10 HITS.47493068._003482.pool.root.1
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas      1060 Nov 20 21:12 memory_monitor_summary.json
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas   1526164 Nov 20 21:12 agis_ddmendpoints.agis.ALL.json
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas   2618122 Nov 20 21:12 log.47493068._003482.job.log.tgz.1
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas        95 Nov 20 21:12 pilot_heartbeat.json
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas      8623 Nov 20 21:12 heartbeat.json
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas      6878 Nov 20 21:13 init_data.xml
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas      4824 Nov 20 21:13 pilotlog.txt
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas      8192 Nov 20 21:13 boinc_mmap_file
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas  12677321 Nov 20 21:13 log.47493068._003482.job.log.1
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas       353 Nov 20 21:13 output.list
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas       620 Nov 20 21:13 runtime_log
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas  15319040 Nov 20 21:13 result.tar.gz
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas      8705 Nov 20 21:13 runtime_log.err
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas       662 Nov 20 21:13 8xlNDmOldf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOoFKDmgjnlEn.diag
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas        29 Nov 20 21:13 wrapper_checkpoint.txt
[2025-11-20 21:13:58] -rw-r--r-- 1 boincer umatlas     21904 Nov 20 21:13 stderr.txt
[2025-11-20 21:13:58] HITS file was successfully produced:
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas 917986629 Nov 20 21:10 shared/HITS.pool.root.1
[2025-11-20 21:13:58]  *** Contents of shared directory: ***
[2025-11-20 21:13:58] total 1310344
[2025-11-20 21:13:58] -rw-r--r-- 2 boincer umatlas 407864107 Nov 19 16:47 ATLAS.root_0
[2025-11-20 21:13:58] -rw-r--r-- 2 boincer umatlas     15120 Nov 19 16:47 start_atlas.sh
[2025-11-20 21:13:58] -rw-r--r-- 2 boincer umatlas    590094 Nov 19 16:47 input.tar.gz
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas 917986629 Nov 20 21:10 HITS.pool.root.1
[2025-11-20 21:13:58] -rw------- 1 boincer umatlas  15319040 Nov 20 21:13 result.tar.gz
21:14:00 (2138610): run_atlas exited; CPU time 291288.262584
21:14:00 (2138610): called boinc_finish(0)

</stderr_txt>
]]>

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