Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:56 (1981543): wrapper (7.7.26015): starting
00:01:56 (1981543): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:01:56] Arguments: --nthreads 9
[2025-11-21 00:01:56] Threads: 9
[2025-11-21 00:01:56] Checking for CVMFS
[2025-11-21 00:01:57] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:01:57] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:01:57] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:01:57] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:01:57] 2.13.3.0 7410 22358 352892 153108 1 394 22033027 25181184 18627 16776704 0 124353483 99.602 127778190 30568 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:01:57] CVMFS is ok
[2025-11-21 00:01:57] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:01:57] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:01:57] Further information can be found at the LHC@home message board.
[2025-11-21 00:01:57] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:01:57] Checking for apptainer binary...
[2025-11-21 00:01:57] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:01:57] Running /usr/bin/apptainer --version
[2025-11-21 00:01:58] apptainer version 1.4.4-1.el9
[2025-11-21 00:01:58] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:01:58] c-16-37.aglt2.org
[2025-11-21 00:01:58] apptainer works
[2025-11-21 00:01:58] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:01:58] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:01:58] Starting ATLAS job with PandaID=6891565337
[2025-11-21 00:01:58] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 19:45:27]  *** The last 200 lines of the pilot log: ***
[2025-11-22 19:45:27] 2025-11-23 00:44:31,545 | INFO     | monitor loop #6385: job 0:6891565337 is in state 'finished'
[2025-11-22 19:45:27] 2025-11-23 00:44:31,545 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:45:27] 2025-11-23 00:44:33,171 | INFO     | time since job start (157318s) is within the limit (172800.0s)
[2025-11-22 19:45:27] 2025-11-23 00:44:34,071 | INFO     | monitor loop #6386: job 0:6891565337 is in state 'finished'
[2025-11-22 19:45:27] 2025-11-23 00:44:34,071 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:45:27] 2025-11-23 00:44:35,178 | INFO     | time since job start (157320s) is within the limit (172800.0s)
[2025-11-22 19:45:27] 2025-11-23 00:44:35,978 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 19:45:27] 2025-11-23 00:44:36,207 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2662.7982500000007
[2025-11-22 19:45:27] 2025-11-23 00:44:36,558 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891565337/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 19:45:27] 2025-11-23 00:44:36,605 | INFO     | extracted standard info from prmon json
[2025-11-22 19:45:27] 2025-11-23 00:44:36,606 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 19:45:27] 2025-11-23 00:44:36,606 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 19:45:27] 2025-11-23 00:44:36,658 | INFO     | monitor loop #6387: job 0:6891565337 is in state 'finished'
[2025-11-22 19:45:27] 2025-11-23 00:44:36,658 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:45:27] 2025-11-23 00:44:37,242 | INFO     | time since job start (157322s) is within the limit (172800.0s)
[2025-11-22 19:45:27] 2025-11-23 00:44:37,356 | INFO     | fitting pss+swap vs Time
[2025-11-22 19:45:27] 2025-11-23 00:44:37,386 | INFO     | sum of square deviations: 5306411177733.943
[2025-11-22 19:45:27] 2025-11-23 00:44:39,358 | INFO     | monitor loop #6388: job 0:6891565337 is in state 'finished'
[2025-11-22 19:45:27] 2025-11-23 00:44:39,358 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:45:27] 2025-11-23 00:44:39,465 | INFO     | time since job start (157324s) is within the limit (172800.0s)
[2025-11-22 19:45:27] 2025-11-23 00:44:40,029 | INFO     | sum of deviations: -9477940043597.111
[2025-11-22 19:45:27] 2025-11-23 00:44:40,030 | INFO     | mean x: 1763780004.5494761
[2025-11-22 19:45:27] 2025-11-23 00:44:40,030 | INFO     | mean y: 2986586.644159876
[2025-11-22 19:45:27] 2025-11-23 00:44:40,030 | INFO     | intersect: 3153326915.218966
[2025-11-22 19:45:27] 2025-11-23 00:44:40,071 | INFO     | chi2: 96.02779084572971
[2025-11-22 19:45:27] 2025-11-23 00:44:40,149 | INFO     | sum of square deviations: 5275586026585.245
[2025-11-22 19:45:27] 2025-11-23 00:44:40,662 | INFO     | sum of deviations: -8393821718548.418
[2025-11-22 19:45:27] 2025-11-23 00:44:40,662 | INFO     | mean x: 1763779852.0583203
[2025-11-22 19:45:27] 2025-11-23 00:44:40,662 | INFO     | mean y: 2991949.7628304823
[2025-11-22 19:45:27] 2025-11-23 00:44:40,662 | INFO     | intersect: 2809287507.135829
[2025-11-22 19:45:27] 2025-11-23 00:44:40,674 | INFO     | chi2: 90.79983041099567
[2025-11-22 19:45:27] 2025-11-23 00:44:40,675 | INFO     | current chi2=90.79983041099567 (change=5.4442160844175325 %)
[2025-11-22 19:45:27] 2025-11-23 00:44:40,675 | INFO     | right removable region: 2571
[2025-11-22 19:45:27] 2025-11-23 00:44:40,687 | INFO     | sum of square deviations: 5275578874945.251
[2025-11-22 19:45:27] 2025-11-23 00:44:41,497 | INFO     | time since job start (157326s) is within the limit (172800.0s)
[2025-11-22 19:45:27] 2025-11-23 00:44:41,597 | INFO     | sum of deviations: -10421930248003.566
[2025-11-22 19:45:27] 2025-11-23 00:44:41,597 | INFO     | mean x: 1763780157.0583203
[2025-11-22 19:45:27] 2025-11-23 00:44:41,597 | INFO     | mean y: 2991255.1372472784
[2025-11-22 19:45:27] 2025-11-23 00:44:41,597 | INFO     | intersect: 3487347039.670059
[2025-11-22 19:45:27] 2025-11-23 00:44:41,609 | INFO     | chi2: 92.97752040688101
[2025-11-22 19:45:27] 2025-11-23 00:44:41,612 | INFO     | current chi2=92.97752040688101 (change=3.176445497688279 %)
[2025-11-22 19:45:27] 2025-11-23 00:44:41,612 | INFO     | left removable region: 10
[2025-11-22 19:45:27] 2025-11-23 00:44:41,624 | INFO     | sum of square deviations: 5208178412861.934
[2025-11-22 19:45:27] 2025-11-23 00:44:41,894 | INFO     | monitor loop #6389: job 0:6891565337 is in state 'finished'
[2025-11-22 19:45:27] 2025-11-23 00:44:41,894 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 19:45:27] 2025-11-23 00:44:42,872 | INFO     | sum of deviations: -9433232352684.611
[2025-11-22 19:45:27] 2025-11-23 00:44:42,872 | INFO     | mean x: 1763780126.5747755
[2025-11-22 19:45:27] 2025-11-23 00:44:42,872 | INFO     | mean y: 2999250.9902381883
[2025-11-22 19:45:27] 2025-11-23 00:44:42,872 | INFO     | intersect: 3197618642.664369
[2025-11-22 19:45:27] 2025-11-23 00:44:42,920 | INFO     | chi2: 86.32723117067395
[2025-11-22 19:45:27] 2025-11-23 00:44:42,921 | INFO     | current memory leak: -1.81 B/s (using 2561 data points, chi2=86.33)
[2025-11-22 19:45:27] 2025-11-23 00:44:42,968 | INFO     | could have reported an average CPU frequency of 2718 MHz (88 samples)
[2025-11-22 19:45:27] 2025-11-23 00:44:42,968 | INFO     | ..............................
[2025-11-22 19:45:27] 2025-11-23 00:44:42,968 | INFO     | . Timing measurements:
[2025-11-22 19:45:27] 2025-11-23 00:44:42,968 | INFO     | . get job = 0 s
[2025-11-22 19:45:27] 2025-11-23 00:44:42,968 | INFO     | . initial setup = 6 s
[2025-11-22 19:45:27] 2025-11-23 00:44:42,968 | INFO     | . payload setup = 20 s
[2025-11-22 19:45:27] 2025-11-23 00:44:42,969 | INFO     | . stage-in = 0 s
[2025-11-22 19:45:27] 2025-11-23 00:44:42,969 | INFO     | . payload execution = 157162 s
[2025-11-22 19:45:27] 2025-11-23 00:44:42,969 | INFO     | . stage-out = 21 s
[2025-11-22 19:45:27] 2025-11-23 00:44:42,969 | INFO     | . log creation = 3 s
[2025-11-22 19:45:27] 2025-11-23 00:44:42,969 | INFO     | ..............................
[2025-11-22 19:45:27] 2025-11-23 00:44:43,533 | INFO     | time since job start (157328s) is within the limit (172800.0s)
[2025-11-22 19:45:27] 2025-11-23 00:44:45,606 | INFO     | time since job start (157330s) is within the limit (172800.0s)
[2025-11-22 19:45:27] 2025-11-23 00:44:46,147 | INFO     | 
[2025-11-22 19:45:27] 2025-11-23 00:44:46,147 | INFO     | job summary report
[2025-11-22 19:45:27] 2025-11-23 00:44:46,147 | INFO     | --------------------------------------------------
[2025-11-22 19:45:27] 2025-11-23 00:44:46,147 | INFO     | PanDA job id: 6891565337
[2025-11-22 19:45:27] 2025-11-23 00:44:46,147 | INFO     | task id: 47493068
[2025-11-22 19:45:27] 2025-11-23 00:44:46,147 | INFO     | errors: (none)
[2025-11-22 19:45:27] 2025-11-23 00:44:46,147 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | pilot state: finished 
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | transexitcode: 0
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | exeerrorcode: 0
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | exeerrordiag: 
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | exitcode: 0
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | exitmsg: OK
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | cpuconsumptiontime: 328652 s
[2025-11-22 19:45:27] 2025-11-23 00:44:46,148 | INFO     | nevents: 1000
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | neventsw: 0
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | pid: 2005598
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | pgrp: 2005598
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | corecount: 9
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | event service: False
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | sizes: {0: 2297962, 1: 2298647, 2: 2298818, 3: 2298874, 14: 2298874, 18: 2299164, 25: 2299320, 157190: 2388128, 157193: 2388127, 157218: 2397177, 157220: 2397233, 
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | --------------------------------------------------
[2025-11-22 19:45:27] 2025-11-23 00:44:46,149 | INFO     | 
[2025-11-22 19:45:27] 2025-11-23 00:44:46,150 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 19:45:27] 2025-11-23 00:44:46,686 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,687 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,687 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,687 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,687 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,687 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,687 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,687 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,688 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,688 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,688 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,688 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,688 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,688 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,688 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,689 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,689 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,689 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 19:45:27] 2025-11-23 00:44:46,689 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,689 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 19:45:27] 2025-11-23 00:44:46,726 | INFO     | job 6891565337 has completed (purged errors)
[2025-11-22 19:45:27] 2025-11-23 00:44:46,726 | INFO     | overall cleanup function is called
[2025-11-22 19:45:27] 2025-11-23 00:44:47,906 | INFO     | --- collectZombieJob: --- 10, [2005598]
[2025-11-22 19:45:27] 2025-11-23 00:44:47,907 | INFO     | zombie collector waiting for pid 2005598
[2025-11-22 19:45:27] 2025-11-23 00:44:47,938 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 19:45:27] 2025-11-23 00:44:47,938 | INFO     | collected zombie processes
[2025-11-22 19:45:27] 2025-11-23 00:44:47,938 | INFO     | will attempt to kill all subprocesses of pid=2005598
[2025-11-22 19:45:27] 2025-11-23 00:44:50,691 | INFO     | process IDs to be killed: [2005598] (in reverse order)
[2025-11-22 19:45:27] 2025-11-23 00:44:57,696 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 19:45:27] 2025-11-23 00:44:57,697 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 19:45:27] 2025-11-23 00:44:57,847 | INFO     | did not find any defunct processes belonging to 2005598
[2025-11-22 19:45:27] 2025-11-23 00:44:57,902 | INFO     | did not find any defunct processes belonging to 2005598
[2025-11-22 19:45:27] 2025-11-23 00:44:57,904 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 19:45:27] 2025-11-23 00:44:57,905 | INFO     | ready for new job
[2025-11-22 19:45:27] 2025-11-23 00:44:57,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 19:45:27] 2025-11-23 00:44:57,914 | INFO     | ***************************************
[2025-11-22 19:45:27] 2025-11-23 00:44:57,914 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 19:45:27] 2025-11-23 00:44:57,914 | INFO     | ***************************************
[2025-11-22 19:45:27] 2025-11-23 00:44:57,914 | INFO     | 
[2025-11-22 19:45:27] 2025-11-23 00:44:57,917 | INFO     | architecture information:
[2025-11-22 19:45:27] 2025-11-23 00:44:57,918 | INFO     | executing command: cat /etc/os-release
[2025-11-22 19:45:27] 2025-11-23 00:44:58,055 | INFO     | cat /etc/os-release:
[2025-11-22 19:45:27] NAME="CentOS Linux"
[2025-11-22 19:45:27] VERSION="7 (Core)"
[2025-11-22 19:45:27] ID="centos"
[2025-11-22 19:45:27] ID_LIKE="rhel fedora"
[2025-11-22 19:45:27] VERSION_ID="7"
[2025-11-22 19:45:27] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 19:45:27] ANSI_COLOR="0;31"
[2025-11-22 19:45:27] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 19:45:27] HOME_URL="https://www.centos.org/"
[2025-11-22 19:45:27] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 19:45:27] 
[2025-11-22 19:45:27] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 19:45:27] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 19:45:27] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 19:45:27] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 19:45:27] 
[2025-11-22 19:45:27] 2025-11-23 00:44:58,055 | INFO     | ***************************************
[2025-11-22 19:45:27] 2025-11-23 00:44:58,559 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 19:45:27] 2025-11-23 00:44:58,729 | INFO     | sufficient remaining disk space (57842597888 B)
[2025-11-22 19:45:27] 2025-11-23 00:44:58,729 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 19:45:27] 2025-11-23 00:44:58,730 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 19:45:27] 2025-11-23 00:44:58,730 | INFO     | update_server=False
[2025-11-22 19:45:27] 2025-11-23 00:44:58,730 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 19:45:27] 2025-11-23 00:44:58,752 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:45:27] 2025-11-23 00:44:58,752 | INFO     | aborting loop
[2025-11-22 19:45:27] 2025-11-23 00:44:58,924 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 19:45:27] 2025-11-23 00:44:58,940 | INFO     | all data control threads have been joined
[2025-11-22 19:45:27] 2025-11-23 00:44:59,607 | INFO     | all payload control threads have been joined
[2025-11-22 19:45:27] 2025-11-23 00:44:59,736 | INFO     | [job] retrieve thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:44:59,778 | INFO     | [job] job monitor thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:44:59,789 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 19:45:27] 2025-11-23 00:44:59,930 | INFO     | [job] queue monitor thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:44:59,947 | INFO     | [data] control thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,176 | INFO     | all job control threads have been joined
[2025-11-22 19:45:27] 2025-11-23 00:45:00,395 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,397 | INFO     | [data] copytool_in thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,406 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,415 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,420 | INFO     | [job] validate thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,613 | INFO     | [payload] control thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,749 | INFO     | [payload] failed_post thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:00,803 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:01,183 | INFO     | [job] control thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:01,253 | INFO     | [payload] validate_post thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:01,763 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 19:45:27] 2025-11-23 00:45:01,799 | INFO     | [data] copytool_out thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:05,778 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 19:45:27] 2025-11-23 00:45:15,565 | INFO     | [monitor] cgroup control has ended
[2025-11-22 19:45:27] 2025-11-23 00:45:15,750 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139686440855360)>', '<ExcThread(monitor, started 139685280081664)>']
[2025-11-22 19:45:27] 2025-11-23 00:45:20,857 | INFO     | all workflow threads have been joined
[2025-11-22 19:45:27] 2025-11-23 00:45:20,858 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 19:45:27] 2025-11-23 00:45:20,858 | INFO     | traces error code: 0
[2025-11-22 19:45:27] 2025-11-23 00:45:20,859 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 19:45:27] 2025-11-23 00:45:23,021 | INFO     | PID=1986644 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 19:45:27] 2025-11-23 00:45:23,025 | INFO     | .. there are 37 such processes running
[2025-11-22 19:45:27] 2025-11-23 00:45:23,025 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 19:45:27] 2025-11-23 00:45:23,025 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 19:45:27] 2025-11-23 00:45:23,025 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 19:45:27] 2025-11-23 00:45:23,026 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 19:45:27] 2025-11-23 00:45:23,026 | INFO     | [monitor] control thread has ended
[2025-11-22 19:45:27] 2025-11-23 00:45:25,391 [wrapper] ==== pilot stdout END ====
[2025-11-22 19:45:27] 2025-11-23 00:45:25,400 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 19:45:27] 2025-11-23 00:45:25,449 [wrapper] pilotpid: 1986644
[2025-11-22 19:45:27] 2025-11-23 00:45:25,481 [wrapper] Pilot exit status: 0
[2025-11-22 19:45:27] 2025-11-23 00:45:25,673 [wrapper] pandaids: 6891565337
[2025-11-22 19:45:27] 2025-11-23 00:45:26,416 [wrapper] cleanup supervisor_pilot 3508507 1986645
[2025-11-22 19:45:27] 2025-11-23 00:45:26,437 [wrapper] Test setup, not cleaning
[2025-11-22 19:45:27] 2025-11-23 00:45:26,457 [wrapper] apfmon messages muted
[2025-11-22 19:45:27] 2025-11-23 00:45:26,497 [wrapper] ==== wrapper stdout END ====
[2025-11-22 19:45:27] 2025-11-23 00:45:26,524 [wrapper] ==== wrapper stderr END ====
[2025-11-22 19:45:27]  *** Error codes and diagnostics ***
[2025-11-22 19:45:27]     "exeErrorCode": 0,
[2025-11-22 19:45:27]     "exeErrorDiag": "",
[2025-11-22 19:45:27]     "pilotErrorCode": 0,
[2025-11-22 19:45:27]     "pilotErrorDiag": "",
[2025-11-22 19:45:27]  *** Listing of results directory ***
[2025-11-22 19:45:27] total 1345460
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:27 queuedata.json
[2025-11-22 19:45:27] -rwx------. 1 boincer umatlas     36292 Nov 18 10:27 runpilot2-wrapper.sh
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 19:45:27] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:01 run_atlas
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:01 job.xml
[2025-11-22 19:45:27] -rw-r--r--. 2 boincer umatlas 412467276 Nov 21 00:01 EVNT.47493065._000145.pool.root.1
[2025-11-22 19:45:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 00:01 start_atlas.sh
[2025-11-22 19:45:27] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:01 shared
[2025-11-22 19:45:27] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 00:01 input.tar.gz
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:01 boinc_lockfile
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas      2770 Nov 21 00:01 pandaJob.out
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas    989817 Nov 21 00:02 agis_schedconf.cvmfs.json
[2025-11-22 19:45:27] drwx------. 5 boincer umatlas      4096 Nov 21 00:02 pilot3
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas       534 Nov 22 16:50 boinc_task_state.xml
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas 924047153 Nov 22 19:31 HITS.47493068._001441.pool.root.1
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas      6615 Nov 22 19:40 init_data.xml
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas      1060 Nov 22 19:43 memory_monitor_summary.json
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas   1526164 Nov 22 19:43 agis_ddmendpoints.agis.ALL.json
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas   3084830 Nov 22 19:43 log.47493068._001441.job.log.tgz.1
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas        95 Nov 22 19:44 pilot_heartbeat.json
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas      7955 Nov 22 19:44 heartbeat.json
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 19:45 boinc_mmap_file
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas        30 Nov 22 19:45 wrapper_checkpoint.txt
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas       823 Nov 22 19:45 pilotlog.txt
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas  15577375 Nov 22 19:45 log.47493068._001441.job.log.1
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas       353 Nov 22 19:45 output.list
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas       620 Nov 22 19:45 runtime_log
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas  18677760 Nov 22 19:45 result.tar.gz
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas      8700 Nov 22 19:45 runtime_log.err
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas       664 Nov 22 19:45 8OlNDmYncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmxDFKDmNjXYIn.diag
[2025-11-22 19:45:27] -rw-r--r--. 1 boincer umatlas     21823 Nov 22 19:45 stderr.txt
[2025-11-22 19:45:27] HITS file was successfully produced:
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas 924047153 Nov 22 19:31 shared/HITS.pool.root.1
[2025-11-22 19:45:27]  *** Contents of shared directory: ***
[2025-11-22 19:45:27] total 1324036
[2025-11-22 19:45:27] -rw-r--r--. 2 boincer umatlas 412467276 Nov 21 00:01 ATLAS.root_0
[2025-11-22 19:45:27] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 00:01 start_atlas.sh
[2025-11-22 19:45:27] -rw-r--r--. 2 boincer umatlas    590103 Nov 21 00:01 input.tar.gz
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas 924047153 Nov 22 19:31 HITS.pool.root.1
[2025-11-22 19:45:27] -rw-------. 1 boincer umatlas  18677760 Nov 22 19:45 result.tar.gz
19:45:29 (1981543): run_atlas exited; CPU time 333740.555880
19:45:29 (1981543): called boinc_finish(0)

</stderr_txt>
]]>

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