Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
23:00:39 (2627506): wrapper (7.7.26015): starting
23:00:39 (2627506): wrapper: running run_atlas (--nthreads 10)
[2025-11-20 23:00:39] Arguments: --nthreads 10
[2025-11-20 23:00:39] Threads: 10
[2025-11-20 23:00:39] Checking for CVMFS
[2025-11-20 23:00:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 23:00:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 23:00:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 23:00:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 23:00:39] 2.13.3.0 290515 25100 355228 153106 0 332 37282165 40960001 11000 16776704 0 120604074 99.745 79194511 38588 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 23:00:39] CVMFS is ok
[2025-11-20 23:00:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 23:00:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 23:00:39] Further information can be found at the LHC@home message board.
[2025-11-20 23:00:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 23:00:39] Checking for apptainer binary...
[2025-11-20 23:00:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 23:00:39] Running /usr/bin/apptainer --version
[2025-11-20 23:00:39] apptainer version 1.4.4-1.el9
[2025-11-20 23:00:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 23:00:40] c6-5-37-4.aglt2.org
[2025-11-20 23:00:40] apptainer works
[2025-11-20 23:00:40] Set ATHENA_PROC_NUMBER=10
[2025-11-20 23:00:40] Set ATHENA_CORE_NUMBER=10
[2025-11-20 23:00:40] Starting ATLAS job with PandaID=6891571043
[2025-11-20 23:00:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 07:09:03]  *** The last 200 lines of the pilot log: ***
[2025-11-21 07:09:03] 2025-11-21 12:08:30,822 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-21 07:09:03] 2025-11-21 12:08:30,831 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 3137.74775
[2025-11-21 07:09:03] 2025-11-21 12:08:30,842 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891571043/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 07:09:03] 2025-11-21 12:08:30,842 | INFO     | extracted standard info from prmon json
[2025-11-21 07:09:03] 2025-11-21 12:08:30,842 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 07:09:03] 2025-11-21 12:08:30,842 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 07:09:03] 2025-11-21 12:08:30,852 | INFO     | fitting pss+swap vs Time
[2025-11-21 07:09:03] 2025-11-21 12:08:30,853 | INFO     | sum of square deviations: 34073142288.797413
[2025-11-21 07:09:03] 2025-11-21 12:08:30,862 | INFO     | sum of deviations: 660034696235.2631
[2025-11-21 07:09:03] 2025-11-21 12:08:30,862 | INFO     | mean x: 1763712263.9498956
[2025-11-21 07:09:03] 2025-11-21 12:08:30,862 | INFO     | mean y: 3151453.260960334
[2025-11-21 07:09:03] 2025-11-21 12:08:30,862 | INFO     | intersect: -34161918457.691006
[2025-11-21 07:09:03] 2025-11-21 12:08:30,863 | INFO     | chi2: 4.963005568641388
[2025-11-21 07:09:03] 2025-11-21 12:08:30,864 | INFO     | sum of square deviations: 33017342222.08661
[2025-11-21 07:09:03] 2025-11-21 12:08:30,879 | INFO     | sum of deviations: 807905069411.0991
[2025-11-21 07:09:03] 2025-11-21 12:08:30,879 | INFO     | mean x: 1763712111.4704642
[2025-11-21 07:09:03] 2025-11-21 12:08:30,879 | INFO     | mean y: 3172786.6856540083
[2025-11-21 07:09:03] 2025-11-21 12:08:30,880 | INFO     | intersect: -43153297720.66977
[2025-11-21 07:09:03] 2025-11-21 12:08:30,881 | INFO     | chi2: 2.499152143319302
[2025-11-21 07:09:03] 2025-11-21 12:08:30,881 | INFO     | current chi2=2.499152143319302 (change=49.64438164022775 %)
[2025-11-21 07:09:03] 2025-11-21 12:08:30,882 | INFO     | sum of square deviations: 31983589079.965893
[2025-11-21 07:09:03] 2025-11-21 12:08:30,893 | INFO     | sum of deviations: 837278444704.7653
[2025-11-21 07:09:03] 2025-11-21 12:08:30,893 | INFO     | mean x: 1763711958.9914713
[2025-11-21 07:09:03] 2025-11-21 12:08:30,894 | INFO     | mean y: 3177084.4413646054
[2025-11-21 07:09:03] 2025-11-21 12:08:30,894 | INFO     | intersect: -46167939053.8838
[2025-11-21 07:09:03] 2025-11-21 12:08:30,895 | INFO     | chi2: 2.148543683796044
[2025-11-21 07:09:03] 2025-11-21 12:08:30,895 | INFO     | current chi2=2.148543683796044 (change=14.02909624612089 %)
[2025-11-21 07:09:03] 2025-11-21 12:08:30,895 | INFO     | right removable region: 468
[2025-11-21 07:09:03] 2025-11-21 12:08:30,896 | INFO     | sum of square deviations: 33016801460.02532
[2025-11-21 07:09:03] 2025-11-21 12:08:30,908 | INFO     | sum of deviations: 520738287339.8864
[2025-11-21 07:09:03] 2025-11-21 12:08:30,908 | INFO     | mean x: 1763712416.4683545
[2025-11-21 07:09:03] 2025-11-21 12:08:30,908 | INFO     | mean y: 3171512.05907173
[2025-11-21 07:09:03] 2025-11-21 12:08:30,908 | INFO     | intersect: -27813956207.711246
[2025-11-21 07:09:03] 2025-11-21 12:08:30,909 | INFO     | chi2: 2.9127680891432166
[2025-11-21 07:09:03] 2025-11-21 12:08:30,909 | INFO     | current chi2=2.9127680891432166 (change=41.310400545438426 %)
[2025-11-21 07:09:03] 2025-11-21 12:08:30,910 | INFO     | sum of square deviations: 31982623467.78679
[2025-11-21 07:09:03] 2025-11-21 12:08:30,916 | INFO     | sum of deviations: 489798925716.5712
[2025-11-21 07:09:03] 2025-11-21 12:08:30,916 | INFO     | mean x: 1763712568.978678
[2025-11-21 07:09:03] 2025-11-21 12:08:30,916 | INFO     | mean y: 3176069.8571428573
[2025-11-21 07:09:03] 2025-11-21 12:08:30,916 | INFO     | intersect: -27007257343.420017
[2025-11-21 07:09:03] 2025-11-21 12:08:30,917 | INFO     | chi2: 2.893523589868861
[2025-11-21 07:09:03] 2025-11-21 12:08:30,917 | INFO     | current chi2=2.893523589868861 (change=0.6606945244314455 %)
[2025-11-21 07:09:03] 2025-11-21 12:08:30,917 | INFO     | left removable region: 20
[2025-11-21 07:09:03] 2025-11-21 12:08:30,918 | INFO     | sum of square deviations: 27875954269.919624
[2025-11-21 07:09:03] 2025-11-21 12:08:30,923 | INFO     | sum of deviations: 610564736151.7056
[2025-11-21 07:09:03] 2025-11-21 12:08:30,923 | INFO     | mean x: 1763712538.513393
[2025-11-21 07:09:03] 2025-11-21 12:08:30,924 | INFO     | mean y: 3210467.0491071427
[2025-11-21 07:09:03] 2025-11-21 12:08:30,924 | INFO     | intersect: -38627240361.567116
[2025-11-21 07:09:03] 2025-11-21 12:08:30,924 | INFO     | chi2: 0.04425249478848677
[2025-11-21 07:09:03] 2025-11-21 12:08:30,925 | INFO     | current memory leak: 21.90 B/s (using 448 data points, chi2=0.04)
[2025-11-21 07:09:03] 2025-11-21 12:08:30,925 | INFO     | could have reported an average CPU frequency of 2946 MHz (20 samples)
[2025-11-21 07:09:03] 2025-11-21 12:08:30,925 | INFO     | ..............................
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . Timing measurements:
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . get job = 0 s
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . initial setup = 3 s
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . payload setup = 7 s
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . stage-in = 0 s
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . payload execution = 29218 s
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . stage-out = 3 s
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | . log creation = 0 s
[2025-11-21 07:09:03] 2025-11-21 12:08:30,926 | INFO     | ..............................
[2025-11-21 07:09:03] 2025-11-21 12:08:31,158 | INFO     | 
[2025-11-21 07:09:03] 2025-11-21 12:08:31,158 | INFO     | job summary report
[2025-11-21 07:09:03] 2025-11-21 12:08:31,158 | INFO     | --------------------------------------------------
[2025-11-21 07:09:03] 2025-11-21 12:08:31,158 | INFO     | PanDA job id: 6891571043
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | task id: 47493068
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | errors: (none)
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | pilot state: finished 
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | transexitcode: 0
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | exeerrorcode: 0
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | exeerrordiag: 
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | exitcode: 0
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | exitmsg: OK
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | cpuconsumptiontime: 240152 s
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | nevents: 1000
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | neventsw: 0
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | pid: 2639026
[2025-11-21 07:09:03] 2025-11-21 12:08:31,159 | INFO     | pgrp: 2639026
[2025-11-21 07:09:03] 2025-11-21 12:08:31,160 | INFO     | corecount: 10
[2025-11-21 07:09:03] 2025-11-21 12:08:31,160 | INFO     | event service: False
[2025-11-21 07:09:03] 2025-11-21 12:08:31,160 | INFO     | sizes: {0: 2297962, 1: 2298818, 6: 2299080, 12: 2299108, 29229: 2338042, 29233: 2347220, 29240: 2347410}
[2025-11-21 07:09:03] 2025-11-21 12:08:31,160 | INFO     | --------------------------------------------------
[2025-11-21 07:09:03] 2025-11-21 12:08:31,160 | INFO     | 
[2025-11-21 07:09:03] 2025-11-21 12:08:31,160 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-21 07:09:03] 2025-11-21 12:08:31,187 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,188 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,189 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 07:09:03] 2025-11-21 12:08:31,190 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,190 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 07:09:03] 2025-11-21 12:08:31,190 | INFO     | job 6891571043 has completed (purged errors)
[2025-11-21 07:09:03] 2025-11-21 12:08:31,190 | INFO     | overall cleanup function is called
[2025-11-21 07:09:03] 2025-11-21 12:08:32,207 | INFO     | --- collectZombieJob: --- 10, [2639026]
[2025-11-21 07:09:03] 2025-11-21 12:08:32,208 | INFO     | zombie collector waiting for pid 2639026
[2025-11-21 07:09:03] 2025-11-21 12:08:32,208 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 07:09:03] 2025-11-21 12:08:32,208 | INFO     | collected zombie processes
[2025-11-21 07:09:03] 2025-11-21 12:08:32,208 | INFO     | will attempt to kill all subprocesses of pid=2639026
[2025-11-21 07:09:03] 2025-11-21 12:08:32,576 | INFO     | process IDs to be killed: [2639026] (in reverse order)
[2025-11-21 07:09:03] 2025-11-21 12:08:32,660 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 07:09:03] 2025-11-21 12:08:32,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 07:09:03] 2025-11-21 12:08:32,669 | INFO     | did not find any defunct processes belonging to 2639026
[2025-11-21 07:09:03] 2025-11-21 12:08:32,677 | INFO     | did not find any defunct processes belonging to 2639026
[2025-11-21 07:09:03] 2025-11-21 12:08:32,678 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 07:09:03] 2025-11-21 12:08:32,678 | INFO     | ready for new job
[2025-11-21 07:09:03] 2025-11-21 12:08:32,678 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 07:09:03] 2025-11-21 12:08:32,681 | INFO     | ***************************************
[2025-11-21 07:09:03] 2025-11-21 12:08:32,681 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 07:09:03] 2025-11-21 12:08:32,681 | INFO     | ***************************************
[2025-11-21 07:09:03] 2025-11-21 12:08:32,681 | INFO     | 
[2025-11-21 07:09:03] 2025-11-21 12:08:32,683 | INFO     | architecture information:
[2025-11-21 07:09:03] 2025-11-21 12:08:32,683 | INFO     | executing command: cat /etc/os-release
[2025-11-21 07:09:03] 2025-11-21 12:08:32,692 | INFO     | cat /etc/os-release:
[2025-11-21 07:09:03] NAME="CentOS Linux"
[2025-11-21 07:09:03] VERSION="7 (Core)"
[2025-11-21 07:09:03] ID="centos"
[2025-11-21 07:09:03] ID_LIKE="rhel fedora"
[2025-11-21 07:09:03] VERSION_ID="7"
[2025-11-21 07:09:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 07:09:03] ANSI_COLOR="0;31"
[2025-11-21 07:09:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 07:09:03] HOME_URL="https://www.centos.org/"
[2025-11-21 07:09:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 07:09:03] 
[2025-11-21 07:09:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 07:09:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 07:09:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 07:09:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 07:09:03] 
[2025-11-21 07:09:03] 2025-11-21 12:08:32,692 | INFO     | ***************************************
[2025-11-21 07:09:03] 2025-11-21 12:08:33,195 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-21 07:09:03] 2025-11-21 12:08:33,216 | INFO     | sufficient remaining disk space (67488448512 B)
[2025-11-21 07:09:03] 2025-11-21 12:08:33,217 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 07:09:03] 2025-11-21 12:08:33,217 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 07:09:03] 2025-11-21 12:08:33,217 | INFO     | update_server=False
[2025-11-21 07:09:03] 2025-11-21 12:08:33,217 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 07:09:03] 2025-11-21 12:08:33,548 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-21 07:09:03] 2025-11-21 12:08:33,548 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-21 07:09:03] 2025-11-21 12:08:33,549 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:09:03] 2025-11-21 12:08:33,549 | INFO     | will abort loop
[2025-11-21 07:09:03] 2025-11-21 12:08:33,918 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 07:09:03] 2025-11-21 12:08:34,019 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 07:09:03] 2025-11-21 12:08:34,155 | INFO     | all data control threads have been joined
[2025-11-21 07:09:03] 2025-11-21 12:08:34,223 | INFO     | [job] retrieve thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:34,243 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:34,554 | INFO     | [job] job monitor thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:34,554 | INFO     | all payload control threads have been joined
[2025-11-21 07:09:03] 2025-11-21 12:08:34,740 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:34,795 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:34,850 | INFO     | all job control threads have been joined
[2025-11-21 07:09:03] 2025-11-21 12:08:35,025 | INFO     | [data] copytool_in thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,163 | INFO     | [data] control thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,430 | INFO     | [job] validate thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,549 | INFO     | [payload] validate_post thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,566 | INFO     | [payload] control thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,572 | INFO     | [payload] failed_post thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,593 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,856 | INFO     | [job] control thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:35,924 | INFO     | [data] copytool_out thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:36,070 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 07:09:03] 2025-11-21 12:08:37,076 | INFO     | [job] queue monitor thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:38,028 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 07:09:03] 2025-11-21 12:08:43,680 | INFO     | [monitor] cgroup control has ended
[2025-11-21 07:09:03] 2025-11-21 12:08:43,713 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140558168532800)>', '<ExcThread(monitor, started 140557678528256)>']
[2025-11-21 07:09:03] 2025-11-21 12:08:48,743 | INFO     | all workflow threads have been joined
[2025-11-21 07:09:03] 2025-11-21 12:08:48,743 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 07:09:03] 2025-11-21 12:08:48,744 | INFO     | traces error code: 0
[2025-11-21 07:09:03] 2025-11-21 12:08:48,744 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 07:09:03] 2025-11-21 12:09:03,437 | INFO     | PID=2631368 has CPU usage=3.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 07:09:03] 2025-11-21 12:09:03,438 | INFO     | .. there are 21 such processes running
[2025-11-21 07:09:03] 2025-11-21 12:09:03,439 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 07:09:03] 2025-11-21 12:09:03,439 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 07:09:03] 2025-11-21 12:09:03,439 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 07:09:03] 2025-11-21 12:09:03,439 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 07:09:03] 2025-11-21 12:09:03,439 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 07:09:03] 2025-11-21 12:09:03,439 | INFO     | [monitor] control thread has ended
[2025-11-21 07:09:03] 2025-11-21 12:09:03,581 [wrapper] ==== pilot stdout END ====
[2025-11-21 07:09:03] 2025-11-21 12:09:03,584 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 07:09:03] 2025-11-21 12:09:03,586 [wrapper] pilotpid: 2631368
[2025-11-21 07:09:03] 2025-11-21 12:09:03,588 [wrapper] Pilot exit status: 0
[2025-11-21 07:09:03] 2025-11-21 12:09:03,609 [wrapper] pandaids: 6891571043
[2025-11-21 07:09:03] 2025-11-21 12:09:03,672 [wrapper] cleanup supervisor_pilot 4060581 2631369
[2025-11-21 07:09:03] 2025-11-21 12:09:03,674 [wrapper] Test setup, not cleaning
[2025-11-21 07:09:03] 2025-11-21 12:09:03,677 [wrapper] apfmon messages muted
[2025-11-21 07:09:03] 2025-11-21 12:09:03,679 [wrapper] ==== wrapper stdout END ====
[2025-11-21 07:09:03] 2025-11-21 12:09:03,681 [wrapper] ==== wrapper stderr END ====
[2025-11-21 07:09:03]  *** Error codes and diagnostics ***
[2025-11-21 07:09:03]     "exeErrorCode": 0,
[2025-11-21 07:09:03]     "exeErrorDiag": "",
[2025-11-21 07:09:03]     "pilotErrorCode": 0,
[2025-11-21 07:09:03]     "pilotErrorDiag": "",
[2025-11-21 07:09:03]  *** Listing of results directory ***
[2025-11-21 07:09:03] total 1308792
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:39 queuedata.json
[2025-11-21 07:09:03] -rwx------. 1 boincer umatlas     36292 Nov 18 10:40 runpilot2-wrapper.sh
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas       100 Nov 20 23:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 07:09:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 23:00 run_atlas
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas       105 Nov 20 23:00 job.xml
[2025-11-21 07:09:03] -rw-r--r--. 2 boincer umatlas 408620724 Nov 20 23:00 EVNT.47493065._000264.pool.root.1
[2025-11-21 07:09:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 23:00 shared
[2025-11-21 07:09:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 23:00 input.tar.gz
[2025-11-21 07:09:03] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 23:00 start_atlas.sh
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas         0 Nov 20 23:00 boinc_lockfile
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas      2770 Nov 20 23:00 pandaJob.out
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas    989817 Nov 20 23:00 agis_schedconf.cvmfs.json
[2025-11-21 07:09:03] drwx------. 5 boincer umatlas      4096 Nov 20 23:00 pilot3
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas       533 Nov 21 06:58 boinc_task_state.xml
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas      6842 Nov 21 07:01 init_data.xml
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas 915671974 Nov 21 07:07 HITS.47493068._002631.pool.root.1
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas      1061 Nov 21 07:08 memory_monitor_summary.json
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas   1526164 Nov 21 07:08 agis_ddmendpoints.agis.ALL.json
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas   2002809 Nov 21 07:08 log.47493068._002631.job.log.tgz.1
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas      8632 Nov 21 07:08 heartbeat.json
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas        29 Nov 21 07:08 wrapper_checkpoint.txt
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 07:08 boinc_mmap_file
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas        95 Nov 21 07:09 pilot_heartbeat.json
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas       893 Nov 21 07:09 pilotlog.txt
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas   3995850 Nov 21 07:09 log.47493068._002631.job.log.1
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas       353 Nov 21 07:09 output.list
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas       620 Nov 21 07:09 runtime_log
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas   6021120 Nov 21 07:09 result.tar.gz
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas      8711 Nov 21 07:09 runtime_log.err
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas       661 Nov 21 07:09 cqMLDmRzcf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmhNFKDmbXy1yn.diag
[2025-11-21 07:09:03] -rw-r--r--. 1 boincer umatlas     21267 Nov 21 07:09 stderr.txt
[2025-11-21 07:09:03] HITS file was successfully produced:
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas 915671974 Nov 21 07:07 shared/HITS.pool.root.1
[2025-11-21 07:09:03]  *** Contents of shared directory: ***
[2025-11-21 07:09:03] total 1299736
[2025-11-21 07:09:03] -rw-r--r--. 2 boincer umatlas 408620724 Nov 20 23:00 ATLAS.root_0
[2025-11-21 07:09:03] -rw-r--r--. 2 boincer umatlas    590101 Nov 20 23:00 input.tar.gz
[2025-11-21 07:09:03] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 23:00 start_atlas.sh
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas 915671974 Nov 21 07:07 HITS.pool.root.1
[2025-11-21 07:09:03] -rw-------. 1 boincer umatlas   6021120 Nov 21 07:09 result.tar.gz
07:09:05 (2627506): run_atlas exited; CPU time 240686.377422
07:09:05 (2627506): called boinc_finish(0)

</stderr_txt>
]]>

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