Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:18 (2204853): wrapper (7.7.26015): starting
00:05:18 (2204853): wrapper: running run_atlas (--nthreads 9)
[2025-11-19 00:05:18] Arguments: --nthreads 9
[2025-11-19 00:05:18] Threads: 9
[2025-11-19 00:05:18] Checking for CVMFS
[2025-11-19 00:05:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:05:20] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:05:20] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:05:21] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:05:21] 2.13.3.0 290515 22285 354648 153031 3 115 25242638 40960000 20386 16776704 0 109832920 99.764 68617810 39683 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-19 00:05:21] CVMFS is ok
[2025-11-19 00:05:21] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:05:21] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:05:21] Further information can be found at the LHC@home message board.
[2025-11-19 00:05:21] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:05:21] Checking for apptainer binary...
[2025-11-19 00:05:21] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:05:21] Running /usr/bin/apptainer --version
[2025-11-19 00:05:21] apptainer version 1.4.4-1.el9
[2025-11-19 00:05:21] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:05:22] c6-5-37-4.aglt2.org
[2025-11-19 00:05:22] apptainer works
[2025-11-19 00:05:22] Set ATHENA_PROC_NUMBER=9
[2025-11-19 00:05:22] Set ATHENA_CORE_NUMBER=9
[2025-11-19 00:05:22] Starting ATLAS job with PandaID=6891589843
[2025-11-19 00:05:22] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/4 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:00:03]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:00:03] 2025-11-21 03:58:47,552 | INFO     | monitor loop #8748: job 0:6891589843 is in state 'finished'
[2025-11-20 23:00:03] 2025-11-21 03:58:47,553 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:03] 2025-11-21 03:58:48,377 | INFO     | time since job start (168710s) is within the limit (172800.0s)
[2025-11-20 23:00:03] 2025-11-21 03:58:48,498 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 23:00:03] 2025-11-21 03:58:48,506 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2698.6500892857143
[2025-11-20 23:00:03] 2025-11-21 03:58:48,516 | INFO     | using path: /tmp/boinchome/slots/4/PanDA_Pilot-6891589843/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:00:03] 2025-11-21 03:58:48,517 | INFO     | extracted standard info from prmon json
[2025-11-20 23:00:03] 2025-11-21 03:58:48,517 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:00:03] 2025-11-21 03:58:48,517 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:00:03] 2025-11-21 03:58:48,565 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:00:03] 2025-11-21 03:58:48,569 | INFO     | sum of square deviations: 6540384618782.532
[2025-11-20 23:00:03] 2025-11-21 03:58:48,747 | INFO     | sum of deviations: 24739956896698.926
[2025-11-20 23:00:03] 2025-11-21 03:58:48,748 | INFO     | mean x: 1763613260.2931597
[2025-11-20 23:00:03] 2025-11-21 03:58:48,748 | INFO     | mean y: 3101918.2754252623
[2025-11-20 23:00:03] 2025-11-21 03:58:48,748 | INFO     | intersect: -6668021965.906987
[2025-11-20 23:00:03] 2025-11-21 03:58:48,751 | INFO     | chi2: 15.577073502496829
[2025-11-20 23:00:03] 2025-11-21 03:58:48,754 | INFO     | sum of square deviations: 6504945713171.66
[2025-11-20 23:00:03] 2025-11-21 03:58:48,897 | INFO     | sum of deviations: 25709647630286.293
[2025-11-20 23:00:03] 2025-11-21 03:58:48,898 | INFO     | mean x: 1763613107.8045685
[2025-11-20 23:00:03] 2025-11-21 03:58:48,899 | INFO     | mean y: 3106090.135968093
[2025-11-20 23:00:03] 2025-11-21 03:58:48,899 | INFO     | intersect: -6967262850.22248
[2025-11-20 23:00:03] 2025-11-21 03:58:48,902 | INFO     | chi2: 12.536328176641108
[2025-11-20 23:00:03] 2025-11-21 03:58:48,902 | INFO     | current chi2=12.536328176641108 (change=19.520645680771317 %)
[2025-11-20 23:00:03] 2025-11-21 03:58:48,902 | INFO     | right removable region: 2757
[2025-11-20 23:00:03] 2025-11-21 03:58:48,906 | INFO     | sum of square deviations: 6504935443234.872
[2025-11-20 23:00:03] 2025-11-21 03:58:49,051 | INFO     | sum of deviations: 23510334227569.996
[2025-11-20 23:00:03] 2025-11-21 03:58:49,051 | INFO     | mean x: 1763613412.8038433
[2025-11-20 23:00:03] 2025-11-21 03:58:49,052 | INFO     | mean y: 3107208.149746193
[2025-11-20 23:00:03] 2025-11-21 03:58:49,052 | INFO     | intersect: -6370997676.529066
[2025-11-20 23:00:03] 2025-11-21 03:58:49,055 | INFO     | chi2: 11.16283875191525
[2025-11-20 23:00:03] 2025-11-21 03:58:49,055 | INFO     | current chi2=11.16283875191525 (change=28.3380235053396 %)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,059 | INFO     | sum of square deviations: 6469614381033.944
[2025-11-20 23:00:03] 2025-11-21 03:58:49,208 | INFO     | sum of deviations: 22418924106521.44
[2025-11-20 23:00:03] 2025-11-21 03:58:49,208 | INFO     | mean x: 1763613565.3149292
[2025-11-20 23:00:03] 2025-11-21 03:58:49,208 | INFO     | mean y: 3111920.7653468945
[2025-11-20 23:00:03] 2025-11-21 03:58:49,208 | INFO     | intersect: -6108275303.477262
[2025-11-20 23:00:03] 2025-11-21 03:58:49,212 | INFO     | chi2: 7.802146668581247
[2025-11-20 23:00:03] 2025-11-21 03:58:49,212 | INFO     | current chi2=7.802146668581247 (change=30.106070310810473 %)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,216 | INFO     | sum of square deviations: 6434421368232.854
[2025-11-20 23:00:03] 2025-11-21 03:58:49,376 | INFO     | sum of deviations: 21586013662596.562
[2025-11-20 23:00:03] 2025-11-21 03:58:49,376 | INFO     | mean x: 1763613717.8260553
[2025-11-20 23:00:03] 2025-11-21 03:58:49,376 | INFO     | mean y: 3115529.9195778747
[2025-11-20 23:00:03] 2025-11-21 03:58:49,377 | INFO     | intersect: -5913405572.737289
[2025-11-20 23:00:03] 2025-11-21 03:58:49,380 | INFO     | chi2: 5.997312716884922
[2025-11-20 23:00:03] 2025-11-21 03:58:49,381 | INFO     | current chi2=5.997312716884922 (change=23.132530422226967 %)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,381 | INFO     | left removable region: 30
[2025-11-20 23:00:03] 2025-11-21 03:58:49,385 | INFO     | sum of square deviations: 6288030136660.729
[2025-11-20 23:00:03] 2025-11-21 03:58:49,587 | INFO     | sum of deviations: 21635698694252.668
[2025-11-20 23:00:03] 2025-11-21 03:58:49,587 | INFO     | mean x: 1763613992.3432343
[2025-11-20 23:00:03] 2025-11-21 03:58:49,587 | INFO     | mean y: 3124749.606160616
[2025-11-20 23:00:03] 2025-11-21 03:58:49,588 | INFO     | intersect: -6065074689.967394
[2025-11-20 23:00:03] 2025-11-21 03:58:49,591 | INFO     | chi2: 1.9770496607320385
[2025-11-20 23:00:03] 2025-11-21 03:58:49,592 | INFO     | current memory leak: 3.44 B/s (using 2727 data points, chi2=1.98)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,597 | INFO     | could have reported an average CPU frequency of 2828 MHz (95 samples)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,597 | INFO     | ..............................
[2025-11-20 23:00:03] 2025-11-21 03:58:49,597 | INFO     | . Timing measurements:
[2025-11-20 23:00:03] 2025-11-21 03:58:49,597 | INFO     | . get job = 1 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,598 | INFO     | . initial setup = 10 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,598 | INFO     | . payload setup = 61 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,598 | INFO     | . stage-in = 0 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,598 | INFO     | . payload execution = 168547 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,598 | INFO     | . stage-out = 4 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,598 | INFO     | . log creation = 1 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,598 | INFO     | ..............................
[2025-11-20 23:00:03] 2025-11-21 03:58:49,696 | INFO     | 
[2025-11-20 23:00:03] 2025-11-21 03:58:49,696 | INFO     | job summary report
[2025-11-20 23:00:03] 2025-11-21 03:58:49,696 | INFO     | --------------------------------------------------
[2025-11-20 23:00:03] 2025-11-21 03:58:49,696 | INFO     | PanDA job id: 6891589843
[2025-11-20 23:00:03] 2025-11-21 03:58:49,696 | INFO     | task id: 47493068
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | errors: (none)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | pilot state: finished 
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | transexitcode: 0
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | exeerrorcode: 0
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | exeerrordiag: 
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | exitcode: 0
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | exitmsg: OK
[2025-11-20 23:00:03] 2025-11-21 03:58:49,697 | INFO     | cpuconsumptiontime: 250963 s
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | nevents: 1000
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | neventsw: 0
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | pid: 2254765
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | pgrp: 2254765
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | corecount: 9
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | event service: False
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | sizes: {0: 2296972, 1: 2297028, 2: 2297255, 3: 2297283, 14: 2297283, 25: 2297311, 36: 2297467, 43: 2297757, 47: 2297785, 168611: 2397425, 168612: 2397424, 168616: 
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | --------------------------------------------------
[2025-11-20 23:00:03] 2025-11-21 03:58:49,698 | INFO     | 
[2025-11-20 23:00:03] 2025-11-21 03:58:49,699 | INFO     | executing command: ls -lF /tmp/boinchome/slots/4
[2025-11-20 23:00:03] 2025-11-21 03:58:49,720 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,720 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,720 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,720 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,720 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,721 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,722 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,722 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:00:03] 2025-11-21 03:58:49,722 | INFO     | job 6891589843 has completed (purged errors)
[2025-11-20 23:00:03] 2025-11-21 03:58:49,722 | INFO     | overall cleanup function is called
[2025-11-20 23:00:03] 2025-11-21 03:58:50,738 | INFO     | --- collectZombieJob: --- 10, [2254765]
[2025-11-20 23:00:03] 2025-11-21 03:58:50,738 | INFO     | zombie collector waiting for pid 2254765
[2025-11-20 23:00:03] 2025-11-21 03:58:50,739 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:00:03] 2025-11-21 03:58:50,739 | INFO     | collected zombie processes
[2025-11-20 23:00:03] 2025-11-21 03:58:50,739 | INFO     | will attempt to kill all subprocesses of pid=2254765
[2025-11-20 23:00:03] 2025-11-21 03:58:51,013 | INFO     | process IDs to be killed: [2254765] (in reverse order)
[2025-11-20 23:00:03] 2025-11-21 03:58:51,086 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:00:03] 2025-11-21 03:58:51,086 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:00:03] 2025-11-21 03:58:51,096 | INFO     | did not find any defunct processes belonging to 2254765
[2025-11-20 23:00:03] 2025-11-21 03:58:51,105 | INFO     | did not find any defunct processes belonging to 2254765
[2025-11-20 23:00:03] 2025-11-21 03:58:51,106 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:00:03] 2025-11-21 03:58:51,107 | INFO     | ready for new job
[2025-11-20 23:00:03] 2025-11-21 03:58:51,107 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:00:03] 2025-11-21 03:58:51,112 | INFO     | ***************************************
[2025-11-20 23:00:03] 2025-11-21 03:58:51,112 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:00:03] 2025-11-21 03:58:51,112 | INFO     | ***************************************
[2025-11-20 23:00:03] 2025-11-21 03:58:51,112 | INFO     | 
[2025-11-20 23:00:03] 2025-11-21 03:58:51,114 | INFO     | architecture information:
[2025-11-20 23:00:03] 2025-11-21 03:58:51,114 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:00:03] 2025-11-21 03:58:51,127 | INFO     | cat /etc/os-release:
[2025-11-20 23:00:03] NAME="CentOS Linux"
[2025-11-20 23:00:03] VERSION="7 (Core)"
[2025-11-20 23:00:03] ID="centos"
[2025-11-20 23:00:03] ID_LIKE="rhel fedora"
[2025-11-20 23:00:03] VERSION_ID="7"
[2025-11-20 23:00:03] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:00:03] ANSI_COLOR="0;31"
[2025-11-20 23:00:03] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:00:03] HOME_URL="https://www.centos.org/"
[2025-11-20 23:00:03] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:00:03] 
[2025-11-20 23:00:03] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:00:03] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:00:03] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:00:03] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:00:03] 
[2025-11-20 23:00:03] 2025-11-21 03:58:51,127 | INFO     | ***************************************
[2025-11-20 23:00:03] 2025-11-21 03:58:51,629 | INFO     | executing command: df -mP /tmp/boinchome/slots/4
[2025-11-20 23:00:03] 2025-11-21 03:58:51,648 | INFO     | sufficient remaining disk space (66761785344 B)
[2025-11-20 23:00:03] 2025-11-21 03:58:51,649 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:00:03] 2025-11-21 03:58:51,649 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:00:03] 2025-11-21 03:58:51,650 | INFO     | update_server=False
[2025-11-20 23:00:03] 2025-11-21 03:58:51,650 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:00:03] 2025-11-21 03:58:51,650 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:00:03] 2025-11-21 03:58:51,650 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:00:03] 2025-11-21 03:58:51,651 | INFO     | aborting loop
[2025-11-20 23:00:03] 2025-11-21 03:58:51,758 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:00:03] 2025-11-21 03:58:52,244 | INFO     | all data control threads have been joined
[2025-11-20 23:00:03] 2025-11-21 03:58:52,648 | INFO     | all payload control threads have been joined
[2025-11-20 23:00:03] 2025-11-21 03:58:52,654 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:52,655 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:52,656 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:52,753 | INFO     | all job control threads have been joined
[2025-11-20 23:00:03] 2025-11-21 03:58:53,103 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,203 | INFO     | [job] validate thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,249 | INFO     | [data] control thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,492 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,563 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,605 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,606 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,653 | INFO     | [payload] control thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,698 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,758 | INFO     | [job] control thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:53,763 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:54,106 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:58:54,309 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:00:03] 2025-11-21 03:58:58,314 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:00:03] 2025-11-21 03:59:21,982 | INFO     | PID=2217153 has CPU usage=7.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:00:03] 2025-11-21 03:59:21,983 | INFO     | .. there are 21 such processes running
[2025-11-20 23:00:03] 2025-11-21 03:59:21,984 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:00:03] 2025-11-21 03:59:21,984 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:00:03] 2025-11-21 03:59:21,984 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:00:03] 2025-11-21 03:59:35,658 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:00:03] 2025-11-21 03:59:36,987 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139940033382208)>', '<ExcThread(monitor, started 139939379386112)>']
[2025-11-20 23:00:03] 2025-11-21 03:59:37,048 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:00:03] 2025-11-21 03:59:37,049 | INFO     | [monitor] control thread has ended
[2025-11-20 23:00:03] 2025-11-21 03:59:42,012 | INFO     | all workflow threads have been joined
[2025-11-20 23:00:03] 2025-11-21 03:59:42,013 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:00:03] 2025-11-21 03:59:42,013 | INFO     | traces error code: 0
[2025-11-20 23:00:03] 2025-11-21 03:59:42,013 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:00:03] 2025-11-21 03:59:42,262 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:00:03] 2025-11-21 03:59:42,267 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:00:03] 2025-11-21 03:59:42,271 [wrapper] pilotpid: 2217153
[2025-11-20 23:00:03] 2025-11-21 03:59:42,274 [wrapper] Pilot exit status: 0
[2025-11-20 23:00:03] 2025-11-21 03:59:42,298 [wrapper] pandaids: 6891589843
[2025-11-20 23:00:03] 2025-11-21 03:59:42,383 [wrapper] cleanup supervisor_pilot 2598328 2217154
[2025-11-20 23:00:03] 2025-11-21 03:59:42,388 [wrapper] Test setup, not cleaning
[2025-11-20 23:00:03] 2025-11-21 03:59:42,392 [wrapper] apfmon messages muted
[2025-11-20 23:00:03] 2025-11-21 03:59:42,397 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:00:03] 2025-11-21 03:59:42,401 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:00:03]  *** Error codes and diagnostics ***
[2025-11-20 23:00:03]     "exeErrorCode": 0,
[2025-11-20 23:00:03]     "exeErrorDiag": "",
[2025-11-20 23:00:03]     "pilotErrorCode": 0,
[2025-11-20 23:00:03]     "pilotErrorDiag": "",
[2025-11-20 23:00:03]  *** Listing of results directory ***
[2025-11-20 23:00:03] total 1348784
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 12:46 pilot3.tar.gz
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 12:54 queuedata.json
[2025-11-20 23:00:03] -rwx------. 1 boincer umatlas     36292 Nov 18 12:57 runpilot2-wrapper.sh
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:00:03] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:05 run_atlas
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:05 job.xml
[2025-11-20 23:00:03] -rw-r--r--. 2 boincer umatlas 408742013 Nov 19 00:05 EVNT.47493065._000540.pool.root.1
[2025-11-20 23:00:03] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:05 start_atlas.sh
[2025-11-20 23:00:03] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:05 shared
[2025-11-20 23:00:03] -rw-r--r--. 2 boincer umatlas    590093 Nov 19 00:05 input.tar.gz
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:05 boinc_lockfile
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas      2772 Nov 19 00:05 pandaJob.out
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas    992806 Nov 19 00:06 agis_schedconf.cvmfs.json
[2025-11-20 23:00:03] drwx------. 5 boincer umatlas      4096 Nov 19 00:06 pilot3
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas       533 Nov 20 22:41 boinc_task_state.xml
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas      6843 Nov 20 22:56 init_data.xml
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas 922586306 Nov 20 22:57 HITS.47493068._005393.pool.root.1
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas      1071 Nov 20 22:58 memory_monitor_summary.json
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas   1526164 Nov 20 22:58 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas   3417019 Nov 20 22:58 log.47493068._005393.job.log.tgz.1
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas      8673 Nov 20 22:58 heartbeat.json
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas        95 Nov 20 22:59 pilot_heartbeat.json
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas      4824 Nov 20 22:59 pilotlog.txt
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas  19531318 Nov 20 22:59 log.47493068._005393.job.log.1
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas       353 Nov 20 22:59 output.list
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas       620 Nov 20 22:59 runtime_log
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas  22968320 Nov 20 22:59 result.tar.gz
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas      8710 Nov 20 22:59 runtime_log.err
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas       670 Nov 20 22:59 0c6KDm97ef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmA9FKDmQBu6Do.diag
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 23:00 boinc_mmap_file
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas        29 Nov 20 23:00 wrapper_checkpoint.txt
[2025-11-20 23:00:03] -rw-r--r--. 1 boincer umatlas     21389 Nov 20 23:00 stderr.txt
[2025-11-20 23:00:03] HITS file was successfully produced:
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas 922586306 Nov 20 22:57 shared/HITS.pool.root.1
[2025-11-20 23:00:03]  *** Contents of shared directory: ***
[2025-11-20 23:00:03] total 1323164
[2025-11-20 23:00:03] -rw-r--r--. 2 boincer umatlas 408742013 Nov 19 00:05 ATLAS.root_0
[2025-11-20 23:00:03] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:05 start_atlas.sh
[2025-11-20 23:00:03] -rw-r--r--. 2 boincer umatlas    590093 Nov 19 00:05 input.tar.gz
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas 922586306 Nov 20 22:57 HITS.pool.root.1
[2025-11-20 23:00:03] -rw-------. 1 boincer umatlas  22968320 Nov 20 22:59 result.tar.gz
23:00:05 (2204853): run_atlas exited; CPU time 254757.139384
23:00:05 (2204853): called boinc_finish(0)

</stderr_txt>
]]>

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