Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:25 (2205965): wrapper (7.7.26015): starting
00:05:25 (2205965): wrapper: running run_atlas (--nthreads 9)
[2025-11-19 00:05:25] Arguments: --nthreads 9
[2025-11-19 00:05:25] Threads: 9
[2025-11-19 00:05:25] Checking for CVMFS
[2025-11-19 00:05:26] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:05:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:05:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:05:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:05:28] 2.13.3.0 290515 22285 354648 153031 3 116 25242638 40960000 20373 16776704 0 109834404 99.764 68617810 39683 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-19 00:05:28] CVMFS is ok
[2025-11-19 00:05:28] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:05:28] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:05:28] Further information can be found at the LHC@home message board.
[2025-11-19 00:05:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:05:28] Checking for apptainer binary...
[2025-11-19 00:05:28] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:05:28] Running /usr/bin/apptainer --version
[2025-11-19 00:05:28] apptainer version 1.4.4-1.el9
[2025-11-19 00:05:28] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:05:29] c6-5-37-4.aglt2.org
[2025-11-19 00:05:29] apptainer works
[2025-11-19 00:05:29] Set ATHENA_PROC_NUMBER=9
[2025-11-19 00:05:29] Set ATHENA_CORE_NUMBER=9
[2025-11-19 00:05:30] Starting ATLAS job with PandaID=6891601833
[2025-11-19 00:05:30] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:00:11]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:00:11] 2025-11-20 17:17:23,713 | INFO     | total number of processed events: 1000 (read)
[2025-11-20 23:00:11] 2025-11-20 17:17:23,715 | INFO     | executing command: lscpu
[2025-11-20 23:00:11] 2025-11-20 17:17:23,723 | INFO     | monitor loop #6633: job 0:6891601833 is in state 'finished'
[2025-11-20 23:00:11] 2025-11-20 17:17:23,723 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:11] 2025-11-20 17:17:23,785 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-20 23:00:11] 2025-11-20 17:17:25,481 | INFO     | time since job start (130220s) is within the limit (172800.0s)
[2025-11-20 23:00:11] 2025-11-20 17:17:26,228 | INFO     | monitor loop #6634: job 0:6891601833 is in state 'finished'
[2025-11-20 23:00:11] 2025-11-20 17:17:26,241 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:11] 2025-11-20 17:17:27,520 | INFO     | time since job start (130222s) is within the limit (172800.0s)
[2025-11-20 23:00:11] 2025-11-20 17:17:28,746 | INFO     | monitor loop #6635: job 0:6891601833 is in state 'finished'
[2025-11-20 23:00:11] 2025-11-20 17:17:28,746 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:11] 2025-11-20 17:17:29,527 | INFO     | time since job start (130224s) is within the limit (172800.0s)
[2025-11-20 23:00:11] 2025-11-20 17:17:31,260 | INFO     | monitor loop #6636: job 0:6891601833 is in state 'finished'
[2025-11-20 23:00:11] 2025-11-20 17:17:31,261 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:00:11] 2025-11-20 17:17:31,556 | INFO     | time since job start (130226s) is within the limit (172800.0s)
[2025-11-20 23:00:11] 2025-11-20 17:17:31,778 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 23:00:11] 2025-11-20 17:17:31,799 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2804.948321428571
[2025-11-20 23:00:11] 2025-11-20 17:17:31,811 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891601833/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:00:11] 2025-11-20 17:17:31,812 | INFO     | extracted standard info from prmon json
[2025-11-20 23:00:11] 2025-11-20 17:17:31,812 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:00:11] 2025-11-20 17:17:31,813 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:00:11] 2025-11-20 17:17:31,852 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:00:11] 2025-11-20 17:17:31,856 | INFO     | sum of square deviations: 3004867320272.3022
[2025-11-20 23:00:11] 2025-11-20 17:17:31,955 | INFO     | sum of deviations: 17497518279084.262
[2025-11-20 23:00:11] 2025-11-20 17:17:31,955 | INFO     | mean x: 1763594033.0830207
[2025-11-20 23:00:11] 2025-11-20 17:17:31,956 | INFO     | mean y: 3074223.450750469
[2025-11-20 23:00:11] 2025-11-20 17:17:31,956 | INFO     | intersect: -10266437053.325916
[2025-11-20 23:00:11] 2025-11-20 17:17:31,959 | INFO     | chi2: 20.574856036124952
[2025-11-20 23:00:11] 2025-11-20 17:17:31,962 | INFO     | sum of square deviations: 2983779892654.118
[2025-11-20 23:00:11] 2025-11-20 17:17:32,036 | INFO     | sum of deviations: 18282098645715.875
[2025-11-20 23:00:11] 2025-11-20 17:17:32,036 | INFO     | mean x: 1763593880.6008463
[2025-11-20 23:00:11] 2025-11-20 17:17:32,036 | INFO     | mean y: 3079896.601786554
[2025-11-20 23:00:11] 2025-11-20 17:17:32,036 | INFO     | intersect: -10802743071.608381
[2025-11-20 23:00:11] 2025-11-20 17:17:32,038 | INFO     | chi2: 17.269157769663344
[2025-11-20 23:00:11] 2025-11-20 17:17:32,039 | INFO     | current chi2=17.269157769663344 (change=16.066689655847526 %)
[2025-11-20 23:00:11] 2025-11-20 17:17:32,039 | INFO     | right removable region: 2126
[2025-11-20 23:00:11] 2025-11-20 17:17:32,041 | INFO     | sum of square deviations: 2983770030784.112
[2025-11-20 23:00:11] 2025-11-20 17:17:32,126 | INFO     | sum of deviations: 16567245526992.617
[2025-11-20 23:00:11] 2025-11-20 17:17:32,127 | INFO     | mean x: 1763594185.6008463
[2025-11-20 23:00:11] 2025-11-20 17:17:32,127 | INFO     | mean y: 3080948.2021626704
[2025-11-20 23:00:11] 2025-11-20 17:17:32,127 | INFO     | intersect: -9789194455.525105
[2025-11-20 23:00:11] 2025-11-20 17:17:32,129 | INFO     | chi2: 16.20882506101847
[2025-11-20 23:00:11] 2025-11-20 17:17:32,129 | INFO     | current chi2=16.20882506101847 (change=21.22022612182893 %)
[2025-11-20 23:00:11] 2025-11-20 17:17:32,129 | INFO     | left removable region: 10
[2025-11-20 23:00:11] 2025-11-20 17:17:32,132 | INFO     | sum of square deviations: 2937715741649.3135
[2025-11-20 23:00:11] 2025-11-20 17:17:32,200 | INFO     | sum of deviations: 16646437972934.115
[2025-11-20 23:00:11] 2025-11-20 17:17:32,201 | INFO     | mean x: 1763594155.1403592
[2025-11-20 23:00:11] 2025-11-20 17:17:32,201 | INFO     | mean y: 3094267.5685255197
[2025-11-20 23:00:11] 2025-11-20 17:17:32,201 | INFO     | intersect: -9990235004.13664
[2025-11-20 23:00:11] 2025-11-20 17:17:32,203 | INFO     | chi2: 8.360877735115727
[2025-11-20 23:00:11] 2025-11-20 17:17:32,203 | INFO     | current memory leak: 5.67 B/s (using 2116 data points, chi2=8.36)
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | could have reported an average CPU frequency of 2859 MHz (74 samples)
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | ..............................
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | . Timing measurements:
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | . get job = 1 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | . initial setup = 7 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | . payload setup = 58 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | . stage-in = 0 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,206 | INFO     | . payload execution = 130043 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,207 | INFO     | . stage-out = 4 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,207 | INFO     | . log creation = 1 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,207 | INFO     | ..............................
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | 
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | job summary report
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | --------------------------------------------------
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | PanDA job id: 6891601833
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | task id: 47493068
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | errors: (none)
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | pilot state: finished 
[2025-11-20 23:00:11] 2025-11-20 17:17:32,311 | INFO     | transexitcode: 0
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | exeerrorcode: 0
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | exeerrordiag: 
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | exitcode: 0
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | exitmsg: OK
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | cpuconsumptiontime: 252328 s
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | nevents: 1000
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | neventsw: 0
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | pid: 2259416
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | pgrp: 2259416
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | corecount: 9
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | event service: False
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | sizes: {0: 2296973, 1: 2297228, 2: 2297228, 3: 2297256, 14: 2297284, 24: 2297312, 35: 2297468, 46: 2297496, 47: 2297786, 57: 2297842, 130106: 2380553, 130112: 2391
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | --------------------------------------------------
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | 
[2025-11-20 23:00:11] 2025-11-20 17:17:32,312 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-20 23:00:11] 2025-11-20 17:17:32,343 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,343 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,343 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,343 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,343 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,344 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:00:11] 2025-11-20 17:17:32,345 | INFO     | job 6891601833 has completed (purged errors)
[2025-11-20 23:00:11] 2025-11-20 17:17:32,345 | INFO     | overall cleanup function is called
[2025-11-20 23:00:11] 2025-11-20 17:17:33,386 | INFO     | --- collectZombieJob: --- 10, [2259416]
[2025-11-20 23:00:11] 2025-11-20 17:17:33,386 | INFO     | zombie collector waiting for pid 2259416
[2025-11-20 23:00:11] 2025-11-20 17:17:33,386 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:00:11] 2025-11-20 17:17:33,387 | INFO     | collected zombie processes
[2025-11-20 23:00:11] 2025-11-20 17:17:33,387 | INFO     | will attempt to kill all subprocesses of pid=2259416
[2025-11-20 23:00:11] 2025-11-20 17:17:33,522 | INFO     | PID=2219002 has CPU usage=15.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-20 23:00:11] 2025-11-20 17:17:33,523 | INFO     | .. there are 24 such processes running
[2025-11-20 23:00:11] 2025-11-20 17:17:33,983 | INFO     | process IDs to be killed: [2259416] (in reverse order)
[2025-11-20 23:00:11] 2025-11-20 17:17:34,138 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:00:11] 2025-11-20 17:17:34,139 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:00:11] 2025-11-20 17:17:34,177 | INFO     | did not find any defunct processes belonging to 2259416
[2025-11-20 23:00:11] 2025-11-20 17:17:34,211 | INFO     | did not find any defunct processes belonging to 2259416
[2025-11-20 23:00:11] 2025-11-20 17:17:34,213 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:00:11] 2025-11-20 17:17:34,213 | INFO     | ready for new job
[2025-11-20 23:00:11] 2025-11-20 17:17:34,213 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:00:11] 2025-11-20 17:17:34,270 | INFO     | ***************************************
[2025-11-20 23:00:11] 2025-11-20 17:17:34,271 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:00:11] 2025-11-20 17:17:34,271 | INFO     | ***************************************
[2025-11-20 23:00:11] 2025-11-20 17:17:34,271 | INFO     | 
[2025-11-20 23:00:11] 2025-11-20 17:17:34,287 | INFO     | architecture information:
[2025-11-20 23:00:11] 2025-11-20 17:17:34,304 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:00:11] 2025-11-20 17:17:34,387 | INFO     | cat /etc/os-release:
[2025-11-20 23:00:11] NAME="CentOS Linux"
[2025-11-20 23:00:11] VERSION="7 (Core)"
[2025-11-20 23:00:11] ID="centos"
[2025-11-20 23:00:11] ID_LIKE="rhel fedora"
[2025-11-20 23:00:11] VERSION_ID="7"
[2025-11-20 23:00:11] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:00:11] ANSI_COLOR="0;31"
[2025-11-20 23:00:11] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:00:11] HOME_URL="https://www.centos.org/"
[2025-11-20 23:00:11] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:00:11] 
[2025-11-20 23:00:11] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:00:11] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:00:11] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:00:11] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:00:11] 
[2025-11-20 23:00:11] 2025-11-20 17:17:34,387 | INFO     | ***************************************
[2025-11-20 23:00:11] 2025-11-20 17:17:34,891 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-20 23:00:11] 2025-11-20 17:17:34,929 | INFO     | sufficient remaining disk space (68001202176 B)
[2025-11-20 23:00:11] 2025-11-20 17:17:34,929 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:00:11] 2025-11-20 17:17:34,929 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:00:11] 2025-11-20 17:17:34,929 | INFO     | update_server=False
[2025-11-20 23:00:11] 2025-11-20 17:17:34,929 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:00:11] 2025-11-20 17:17:34,930 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:00:11] 2025-11-20 17:17:34,931 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:00:11] 2025-11-20 17:17:34,932 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:00:11] 2025-11-20 17:17:34,932 | INFO     | aborting loop
[2025-11-20 23:00:11] 2025-11-20 17:17:35,162 | INFO     | all job control threads have been joined
[2025-11-20 23:00:11] 2025-11-20 17:17:35,480 | INFO     | all data control threads have been joined
[2025-11-20 23:00:11] 2025-11-20 17:17:35,682 | INFO     | all payload control threads have been joined
[2025-11-20 23:00:11] 2025-11-20 17:17:35,936 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:35,937 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,169 | INFO     | [job] control thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,201 | INFO     | [job] validate thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,233 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,233 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,233 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,394 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,416 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,487 | INFO     | [data] control thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,690 | INFO     | [payload] control thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:36,942 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:37,020 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:37,053 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:37,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:00:11] 2025-11-20 17:17:38,359 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:17:38,939 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:00:11] 2025-11-20 17:18:06,169 | INFO     | PID=2219002 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:00:11] 2025-11-20 17:18:06,169 | INFO     | .. there are 24 such processes running
[2025-11-20 23:00:11] 2025-11-20 17:18:06,170 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:00:11] 2025-11-20 17:18:06,171 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:00:11] 2025-11-20 17:18:06,171 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:00:11] 2025-11-20 17:18:28,541 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:00:11] 2025-11-20 17:18:30,007 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140161778222912)>', '<ExcThread(monitor, started 140161157428992)>']
[2025-11-20 23:00:11] 2025-11-20 17:18:30,333 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:00:11] 2025-11-20 17:18:30,333 | INFO     | [monitor] control thread has ended
[2025-11-20 23:00:11] 2025-11-20 17:18:35,091 | INFO     | all workflow threads have been joined
[2025-11-20 23:00:11] 2025-11-20 17:18:35,091 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:00:11] 2025-11-20 17:18:35,092 | INFO     | traces error code: 0
[2025-11-20 23:00:11] 2025-11-20 17:18:35,092 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:00:11] 2025-11-20 17:18:35,750 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:00:11] 2025-11-20 17:18:35,753 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:00:11] 2025-11-20 17:18:35,756 [wrapper] pilotpid: 2219002
[2025-11-20 23:00:11] 2025-11-20 17:18:35,759 [wrapper] Pilot exit status: 0
[2025-11-20 23:00:11] 2025-11-20 17:18:35,814 [wrapper] pandaids: 6891601833
[2025-11-20 23:00:11] 2025-11-20 17:18:35,886 [wrapper] cleanup supervisor_pilot  704998 2219003
[2025-11-20 23:00:11] 2025-11-20 17:18:35,889 [wrapper] Test setup, not cleaning
[2025-11-20 23:00:11] 2025-11-20 17:18:35,891 [wrapper] apfmon messages muted
[2025-11-20 23:00:11] 2025-11-20 17:18:35,894 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:00:11] 2025-11-20 17:18:35,897 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:00:11]  *** Error codes and diagnostics ***
[2025-11-20 23:00:11]     "exeErrorCode": 0,
[2025-11-20 23:00:11]     "exeErrorDiag": "",
[2025-11-20 23:00:11]     "pilotErrorCode": 0,
[2025-11-20 23:00:11]     "pilotErrorDiag": "",
[2025-11-20 23:00:11]  *** Listing of results directory ***
[2025-11-20 23:00:11] total 1346840
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-20 23:00:11] -rwx------. 1 boincer umatlas     36292 Nov 18 14:18 runpilot2-wrapper.sh
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:18 queuedata.json
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:00:11] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:05 run_atlas
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:05 job.xml
[2025-11-20 23:00:11] -rw-r--r--. 2 boincer umatlas 409650914 Nov 19 00:05 EVNT.47493065._000900.pool.root.1
[2025-11-20 23:00:11] -rw-r--r--. 2 boincer umatlas    590094 Nov 19 00:05 input.tar.gz
[2025-11-20 23:00:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:05 start_atlas.sh
[2025-11-20 23:00:11] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:05 shared
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:05 boinc_lockfile
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 00:05 pandaJob.out
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas    992806 Nov 19 00:06 agis_schedconf.cvmfs.json
[2025-11-20 23:00:11] drwx------. 5 boincer umatlas      4096 Nov 19 00:07 pilot3
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas       533 Nov 20 12:03 boinc_task_state.xml
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas 929723526 Nov 20 12:16 HITS.47493068._007148.pool.root.1
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas      1070 Nov 20 12:17 memory_monitor_summary.json
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas   1526164 Nov 20 12:17 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas   2989483 Nov 20 12:17 log.47493068._007148.job.log.tgz.1
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas      8657 Nov 20 12:17 heartbeat.json
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas        95 Nov 20 12:18 pilot_heartbeat.json
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas      4824 Nov 20 12:18 pilotlog.txt
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas  14941452 Nov 20 12:18 log.47493068._007148.job.log.1
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas       353 Nov 20 12:18 output.list
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas       620 Nov 20 12:18 runtime_log
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas  17950720 Nov 20 12:18 result.tar.gz
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas      8710 Nov 20 12:18 runtime_log.err
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas       669 Nov 20 12:18 7I1MDmZOgf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmlmFKDmxkFufm.diag
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas      6843 Nov 20 22:56 init_data.xml
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 23:00 boinc_mmap_file
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas     21939 Nov 20 23:00 stderr.txt
[2025-11-20 23:00:11] -rw-r--r--. 1 boincer umatlas        29 Nov 20 23:00 wrapper_checkpoint.txt
[2025-11-20 23:00:11] HITS file was successfully produced:
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas 929723526 Nov 20 12:16 shared/HITS.pool.root.1
[2025-11-20 23:00:11]  *** Contents of shared directory: ***
[2025-11-20 23:00:11] total 1326124
[2025-11-20 23:00:11] -rw-r--r--. 2 boincer umatlas 409650914 Nov 19 00:05 ATLAS.root_0
[2025-11-20 23:00:11] -rw-r--r--. 2 boincer umatlas    590094 Nov 19 00:05 input.tar.gz
[2025-11-20 23:00:11] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:05 start_atlas.sh
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas 929723526 Nov 20 12:16 HITS.pool.root.1
[2025-11-20 23:00:11] -rw-------. 1 boincer umatlas  17950720 Nov 20 12:18 result.tar.gz
23:00:13 (2205965): run_atlas exited; CPU time 255118.163072
23:00:13 (2205965): called boinc_finish(0)

</stderr_txt>
]]>

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