Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
20:40:43 (2882765): wrapper (7.7.26015): starting
20:40:43 (2882765): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 20:40:43] Arguments: --nthreads 8
[2025-11-20 20:40:43] Threads: 8
[2025-11-20 20:40:43] Checking for CVMFS
[2025-11-20 20:40:43] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 20:40:43] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 20:40:43] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 20:40:44] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 20:40:44] 2.13.2.0 4359 25884 273448 153103 2 190 39191633 40960000 8003 16776704 0 29540090 99.531 34493401 27364 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 20:40:44] CVMFS is ok
[2025-11-20 20:40:44] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 20:40:44] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 20:40:44] Further information can be found at the LHC@home message board.
[2025-11-20 20:40:44] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 20:40:44] Checking for apptainer binary...
[2025-11-20 20:40:44] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 20:40:44] Running /usr/bin/apptainer --version
[2025-11-20 20:40:44] apptainer version 1.4.4-1.el9
[2025-11-20 20:40:44] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 20:40:45] c-211-14.aglt2.org
[2025-11-20 20:40:45] apptainer works
[2025-11-20 20:40:45] Set ATHENA_PROC_NUMBER=8
[2025-11-20 20:40:45] Set ATHENA_CORE_NUMBER=8
[2025-11-20 20:40:45] Starting ATLAS job with PandaID=6891598809
[2025-11-20 20:40:45] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 22:18:41]  *** The last 200 lines of the pilot log: ***
[2025-11-21 22:18:41] 2025-11-22 03:17:26,702 | INFO     | time since job start (92164s) is within the limit (172800.0s)
[2025-11-21 22:18:41] 2025-11-22 03:17:27,330 | INFO     | monitor loop #5398: job 0:6891598809 is in state 'finished'
[2025-11-21 22:18:41] 2025-11-22 03:17:27,331 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 22:18:41] 2025-11-22 03:17:28,730 | INFO     | time since job start (92166s) is within the limit (172800.0s)
[2025-11-21 22:18:41] 2025-11-22 03:17:29,838 | INFO     | monitor loop #5399: job 0:6891598809 is in state 'finished'
[2025-11-21 22:18:41] 2025-11-22 03:17:29,839 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 22:18:41] 2025-11-22 03:17:30,737 | INFO     | time since job start (92168s) is within the limit (172800.0s)
[2025-11-21 22:18:41] 2025-11-22 03:17:32,003 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 22:18:41] 2025-11-22 03:17:32,036 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2742.6214583333335
[2025-11-21 22:18:41] 2025-11-22 03:17:32,181 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891598809/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 22:18:41] 2025-11-22 03:17:32,182 | INFO     | extracted standard info from prmon json
[2025-11-21 22:18:41] 2025-11-22 03:17:32,182 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 22:18:41] 2025-11-22 03:17:32,182 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 22:18:41] 2025-11-22 03:17:32,583 | INFO     | monitor loop #5400: job 0:6891598809 is in state 'finished'
[2025-11-21 22:18:41] 2025-11-22 03:17:32,583 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 22:18:41] 2025-11-22 03:17:32,595 | INFO     | fitting pss+swap vs Time
[2025-11-21 22:18:41] 2025-11-22 03:17:32,597 | INFO     | sum of square deviations: 1065841629649.5632
[2025-11-21 22:18:41] 2025-11-22 03:17:32,791 | INFO     | time since job start (92170s) is within the limit (172800.0s)
[2025-11-21 22:18:41] 2025-11-22 03:17:33,636 | INFO     | sum of deviations: 1819602594156.604
[2025-11-21 22:18:41] 2025-11-22 03:17:33,636 | INFO     | mean x: 1763735355.7886016
[2025-11-21 22:18:41] 2025-11-22 03:17:33,636 | INFO     | mean y: 2932223.3373094765
[2025-11-21 22:18:41] 2025-11-22 03:17:33,636 | INFO     | intersect: -3008113076.0040584
[2025-11-21 22:18:41] 2025-11-22 03:17:33,638 | INFO     | chi2: 28.818430944675477
[2025-11-21 22:18:41] 2025-11-22 03:17:33,678 | INFO     | sum of square deviations: 1055287525138.138
[2025-11-21 22:18:41] 2025-11-22 03:17:34,746 | INFO     | sum of deviations: 2437703984121.4595
[2025-11-21 22:18:41] 2025-11-22 03:17:34,746 | INFO     | mean x: 1763735203.3038564
[2025-11-21 22:18:41] 2025-11-22 03:17:34,746 | INFO     | mean y: 2941153.626994681
[2025-11-21 22:18:41] 2025-11-22 03:17:34,746 | INFO     | intersect: -4071270120.183221
[2025-11-21 22:18:41] 2025-11-22 03:17:34,748 | INFO     | chi2: 24.104563861364387
[2025-11-21 22:18:41] 2025-11-22 03:17:34,797 | INFO     | current chi2=24.104563861364387 (change=16.357126077962374 %)
[2025-11-21 22:18:41] 2025-11-22 03:17:34,797 | INFO     | right removable region: 1503
[2025-11-21 22:18:41] 2025-11-22 03:17:34,799 | INFO     | sum of square deviations: 1055283209074.5288
[2025-11-21 22:18:41] 2025-11-22 03:17:34,846 | INFO     | time since job start (92172s) is within the limit (172800.0s)
[2025-11-21 22:18:41] 2025-11-22 03:17:35,692 | INFO     | monitor loop #5401: job 0:6891598809 is in state 'finished'
[2025-11-21 22:18:41] 2025-11-22 03:17:35,693 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 22:18:41] 2025-11-22 03:17:35,735 | INFO     | sum of deviations: 1266147435159.2415
[2025-11-21 22:18:41] 2025-11-22 03:17:35,735 | INFO     | mean x: 1763735508.3045213
[2025-11-21 22:18:41] 2025-11-22 03:17:35,735 | INFO     | mean y: 2940215.936170213
[2025-11-21 22:18:41] 2025-11-22 03:17:35,735 | INFO     | intersect: -2113220802.201792
[2025-11-21 22:18:41] 2025-11-22 03:17:35,971 | INFO     | chi2: 25.599257683903996
[2025-11-21 22:18:41] 2025-11-22 03:17:35,972 | INFO     | current chi2=25.599257683903996 (change=11.17053619939103 %)
[2025-11-21 22:18:41] 2025-11-22 03:17:35,972 | INFO     | left removable region: 10
[2025-11-21 22:18:41] 2025-11-22 03:17:35,974 | INFO     | sum of square deviations: 1032305886582.0977
[2025-11-21 22:18:41] 2025-11-22 03:17:36,958 | INFO     | sum of deviations: 1813501337627.3105
[2025-11-21 22:18:41] 2025-11-22 03:17:36,958 | INFO     | mean x: 1763735477.8385801
[2025-11-21 22:18:41] 2025-11-22 03:17:36,958 | INFO     | mean y: 2953852.300066979
[2025-11-21 22:18:41] 2025-11-22 03:17:36,958 | INFO     | intersect: -3095484982.405381
[2025-11-21 22:18:41] 2025-11-22 03:17:37,005 | INFO     | chi2: 19.486292214015815
[2025-11-21 22:18:41] 2025-11-22 03:17:37,005 | INFO     | current memory leak: 1.76 B/s (using 1493 data points, chi2=19.49)
[2025-11-21 22:18:41] 2025-11-22 03:17:37,006 | INFO     | could have reported an average CPU frequency of 2716 MHz (54 samples)
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | ..............................
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | . Timing measurements:
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | . get job = 0 s
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | . initial setup = 4 s
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | . payload setup = 21 s
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | . stage-in = 0 s
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | . payload execution = 92037 s
[2025-11-21 22:18:41] 2025-11-22 03:17:37,007 | INFO     | . stage-out = 21 s
[2025-11-21 22:18:41] 2025-11-22 03:17:37,008 | INFO     | . log creation = 9 s
[2025-11-21 22:18:41] 2025-11-22 03:17:37,008 | INFO     | ..............................
[2025-11-21 22:18:41] 2025-11-22 03:17:37,102 | INFO     | time since job start (92175s) is within the limit (172800.0s)
[2025-11-21 22:18:41] 2025-11-22 03:17:39,205 | INFO     | time since job start (92177s) is within the limit (172800.0s)
[2025-11-21 22:18:41] 2025-11-22 03:17:39,295 | INFO     | 
[2025-11-21 22:18:41] 2025-11-22 03:17:39,296 | INFO     | job summary report
[2025-11-21 22:18:41] 2025-11-22 03:17:39,296 | INFO     | --------------------------------------------------
[2025-11-21 22:18:41] 2025-11-22 03:17:39,296 | INFO     | PanDA job id: 6891598809
[2025-11-21 22:18:41] 2025-11-22 03:17:39,296 | INFO     | task id: 47493068
[2025-11-21 22:18:41] 2025-11-22 03:17:39,296 | INFO     | errors: (none)
[2025-11-21 22:18:41] 2025-11-22 03:17:39,296 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 22:18:41] 2025-11-22 03:17:39,296 | INFO     | pilot state: finished 
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | transexitcode: 0
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | exeerrorcode: 0
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | exeerrordiag: 
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | exitcode: 0
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | exitmsg: OK
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | cpuconsumptiontime: 339868 s
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | nevents: 1000
[2025-11-21 22:18:41] 2025-11-22 03:17:39,297 | INFO     | neventsw: 0
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | pid: 2898168
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | pgrp: 2898168
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | corecount: 8
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | event service: False
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | sizes: {0: 2298624, 1: 2298823, 12: 2298823, 17: 2299113, 23: 2299141, 92064: 2365141, 92065: 2365268, 92088: 2374318, 92089: 2374374, 92140: 2374620}
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | --------------------------------------------------
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | 
[2025-11-21 22:18:41] 2025-11-22 03:17:39,298 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-21 22:18:41] 2025-11-22 03:17:39,556 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,556 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,556 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,556 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,556 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,557 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,558 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,558 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,558 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,558 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 22:18:41] 2025-11-22 03:17:39,558 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,558 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 22:18:41] 2025-11-22 03:17:39,558 | INFO     | job 6891598809 has completed (purged errors)
[2025-11-21 22:18:41] 2025-11-22 03:17:39,559 | INFO     | overall cleanup function is called
[2025-11-21 22:18:41] 2025-11-22 03:17:40,718 | INFO     | --- collectZombieJob: --- 10, [2898168]
[2025-11-21 22:18:41] 2025-11-22 03:17:40,719 | INFO     | zombie collector waiting for pid 2898168
[2025-11-21 22:18:41] 2025-11-22 03:17:40,719 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 22:18:41] 2025-11-22 03:17:40,719 | INFO     | collected zombie processes
[2025-11-21 22:18:41] 2025-11-22 03:17:40,719 | INFO     | will attempt to kill all subprocesses of pid=2898168
[2025-11-21 22:18:41] 2025-11-22 03:17:56,433 | INFO     | PID=2886494 has CPU usage=3.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 22:18:41] 2025-11-22 03:17:56,434 | INFO     | .. there are 18 such processes running
[2025-11-21 22:18:41] 2025-11-22 03:17:56,989 | INFO     | process IDs to be killed: [2898168] (in reverse order)
[2025-11-21 22:18:41] 2025-11-22 03:17:57,935 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 22:18:41] 2025-11-22 03:17:57,935 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 22:18:41] 2025-11-22 03:17:58,077 | INFO     | did not find any defunct processes belonging to 2898168
[2025-11-21 22:18:41] 2025-11-22 03:17:58,221 | INFO     | did not find any defunct processes belonging to 2898168
[2025-11-21 22:18:41] 2025-11-22 03:17:58,286 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 22:18:41] 2025-11-22 03:17:58,286 | INFO     | ready for new job
[2025-11-21 22:18:41] 2025-11-22 03:17:58,286 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 22:18:41] 2025-11-22 03:17:58,334 | INFO     | ***************************************
[2025-11-21 22:18:41] 2025-11-22 03:17:58,334 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 22:18:41] 2025-11-22 03:17:58,376 | INFO     | ***************************************
[2025-11-21 22:18:41] 2025-11-22 03:17:58,376 | INFO     | 
[2025-11-21 22:18:41] 2025-11-22 03:17:58,379 | INFO     | architecture information:
[2025-11-21 22:18:41] 2025-11-22 03:17:58,424 | INFO     | executing command: cat /etc/os-release
[2025-11-21 22:18:41] 2025-11-22 03:17:58,649 | INFO     | cat /etc/os-release:
[2025-11-21 22:18:41] NAME="CentOS Linux"
[2025-11-21 22:18:41] VERSION="7 (Core)"
[2025-11-21 22:18:41] ID="centos"
[2025-11-21 22:18:41] ID_LIKE="rhel fedora"
[2025-11-21 22:18:41] VERSION_ID="7"
[2025-11-21 22:18:41] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 22:18:41] ANSI_COLOR="0;31"
[2025-11-21 22:18:41] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 22:18:41] HOME_URL="https://www.centos.org/"
[2025-11-21 22:18:41] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 22:18:41] 
[2025-11-21 22:18:41] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 22:18:41] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 22:18:41] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 22:18:41] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 22:18:41] 
[2025-11-21 22:18:41] 2025-11-22 03:17:58,649 | INFO     | ***************************************
[2025-11-21 22:18:41] 2025-11-22 03:17:59,153 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-21 22:18:41] 2025-11-22 03:17:59,350 | INFO     | sufficient remaining disk space (56305385472 B)
[2025-11-21 22:18:41] 2025-11-22 03:17:59,357 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 22:18:41] 2025-11-22 03:17:59,357 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 22:18:41] 2025-11-22 03:17:59,357 | INFO     | update_server=False
[2025-11-21 22:18:41] 2025-11-22 03:17:59,357 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 22:18:41] 2025-11-22 03:17:59,381 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 22:18:41] 2025-11-22 03:17:59,555 | INFO     | all data control threads have been joined
[2025-11-21 22:18:41] 2025-11-22 03:17:59,596 | INFO     | all payload control threads have been joined
[2025-11-21 22:18:41] 2025-11-22 03:17:59,745 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:18:41] 2025-11-22 03:17:59,746 | INFO     | aborting loop
[2025-11-21 22:18:41] 2025-11-22 03:18:00,364 | INFO     | [job] retrieve thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:00,380 | INFO     | all job control threads have been joined
[2025-11-21 22:18:41] 2025-11-22 03:18:00,564 | INFO     | [data] control thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:00,640 | INFO     | [payload] control thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:00,752 | INFO     | [job] job monitor thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,293 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 22:18:41] 2025-11-22 03:18:01,360 | INFO     | [payload] validate_post thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,387 | INFO     | [job] control thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,388 | INFO     | [data] copytool_out thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,424 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 22:18:41] 2025-11-22 03:18:01,618 | INFO     | [payload] failed_post thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,802 | INFO     | [data] copytool_in thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,811 | INFO     | [job] validate thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,813 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,815 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,818 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:01,819 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:02,430 | INFO     | [job] queue monitor thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:05,302 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 22:18:41] 2025-11-22 03:18:18,449 | INFO     | [monitor] cgroup control has ended
[2025-11-21 22:18:41] 2025-11-22 03:18:19,843 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140317041198912)>', '<ExcThread(monitor, started 140316556379904)>']
[2025-11-21 22:18:41] 2025-11-22 03:18:24,868 | INFO     | all workflow threads have been joined
[2025-11-21 22:18:41] 2025-11-22 03:18:24,869 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 22:18:41] 2025-11-22 03:18:24,894 | INFO     | traces error code: 0
[2025-11-21 22:18:41] 2025-11-22 03:18:24,894 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 22:18:41] 2025-11-22 03:18:34,127 | INFO     | PID=2886494 has CPU usage=1.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 22:18:41] 2025-11-22 03:18:34,173 | INFO     | .. there are 18 such processes running
[2025-11-21 22:18:41] 2025-11-22 03:18:34,174 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 22:18:41] 2025-11-22 03:18:34,174 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 22:18:41] 2025-11-22 03:18:34,174 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 22:18:41] 2025-11-22 03:18:34,174 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 22:18:41] 2025-11-22 03:18:34,174 | INFO     | [monitor] control thread has ended
[2025-11-21 22:18:41] 2025-11-22 03:18:40,541 [wrapper] ==== pilot stdout END ====
[2025-11-21 22:18:41] 2025-11-22 03:18:40,594 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 22:18:41] 2025-11-22 03:18:40,687 [wrapper] pilotpid: 2886494
[2025-11-21 22:18:41] 2025-11-22 03:18:40,705 [wrapper] Pilot exit status: 0
[2025-11-21 22:18:41] 2025-11-22 03:18:40,807 [wrapper] pandaids: 6891598809
[2025-11-21 22:18:41] 2025-11-22 03:18:41,013 [wrapper] cleanup supervisor_pilot 1399519 2886495
[2025-11-21 22:18:41] 2025-11-22 03:18:41,017 [wrapper] Test setup, not cleaning
[2025-11-21 22:18:41] 2025-11-22 03:18:41,048 [wrapper] apfmon messages muted
[2025-11-21 22:18:41] 2025-11-22 03:18:41,071 [wrapper] ==== wrapper stdout END ====
[2025-11-21 22:18:41] 2025-11-22 03:18:41,118 [wrapper] ==== wrapper stderr END ====
[2025-11-21 22:18:41]  *** Error codes and diagnostics ***
[2025-11-21 22:18:41]     "exeErrorCode": 0,
[2025-11-21 22:18:41]     "exeErrorDiag": "",
[2025-11-21 22:18:41]     "pilotErrorCode": 0,
[2025-11-21 22:18:41]     "pilotErrorDiag": "",
[2025-11-21 22:18:41]  *** Listing of results directory ***
[2025-11-21 22:18:41] total 1342916
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-21 22:18:41] -rwx------. 1 boincer umatlas     36292 Nov 18 14:00 runpilot2-wrapper.sh
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:00 queuedata.json
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas       100 Nov 20 20:40 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 22:18:41] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 20:40 run_atlas
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas       105 Nov 20 20:40 job.xml
[2025-11-21 22:18:41] -rw-r--r--. 2 boincer umatlas 410119441 Nov 20 20:40 EVNT.47493065._000807.pool.root.1
[2025-11-21 22:18:41] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 20:40 start_atlas.sh
[2025-11-21 22:18:41] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 20:40 shared
[2025-11-21 22:18:41] -rw-r--r--. 2 boincer umatlas    590092 Nov 20 20:40 input.tar.gz
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas         0 Nov 20 20:40 boinc_lockfile
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas      2772 Nov 20 20:40 pandaJob.out
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas    989817 Nov 20 20:41 agis_schedconf.cvmfs.json
[2025-11-21 22:18:41] drwx------. 5 boincer umatlas      4096 Nov 20 20:41 pilot3
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas       533 Nov 21 21:30 boinc_task_state.xml
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas 933442869 Nov 21 22:05 HITS.47493068._006718.pool.root.1
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas      6616 Nov 21 22:13 init_data.xml
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas      1054 Nov 21 22:16 memory_monitor_summary.json
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas   1526164 Nov 21 22:16 agis_ddmendpoints.agis.ALL.json
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas   2492492 Nov 21 22:16 log.47493068._006718.job.log.tgz.1
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas      8624 Nov 21 22:17 heartbeat.json
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas       823 Nov 21 22:18 pilotlog.txt
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas        95 Nov 21 22:18 pilot_heartbeat.json
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 22:18 boinc_mmap_file
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas        29 Nov 21 22:18 wrapper_checkpoint.txt
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas  11337825 Nov 21 22:18 log.47493068._006718.job.log.1
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas       353 Nov 21 22:18 output.list
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas       620 Nov 21 22:18 runtime_log
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas  13854720 Nov 21 22:18 result.tar.gz
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas      8704 Nov 21 22:18 runtime_log.err
[2025-11-21 22:18:41] -rw-------. 1 boincer umatlas       660 Nov 21 22:18 RjVKDmW7ff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmuNGKDmB3Xr4m.diag
[2025-11-21 22:18:41] -rw-r--r--. 1 boincer umatlas     21812 Nov 21 22:18 stderr.txt
[2025-11-21 22:18:42] HITS file was successfully produced:
[2025-11-21 22:18:42] -rw-------. 1 boincer umatlas 933442869 Nov 21 22:05 shared/HITS.pool.root.1
[2025-11-21 22:18:42]  *** Contents of shared directory: ***
[2025-11-21 22:18:42] total 1326208
[2025-11-21 22:18:42] -rw-r--r--. 2 boincer umatlas 410119441 Nov 20 20:40 ATLAS.root_0
[2025-11-21 22:18:42] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 20:40 start_atlas.sh
[2025-11-21 22:18:42] -rw-r--r--. 2 boincer umatlas    590092 Nov 20 20:40 input.tar.gz
[2025-11-21 22:18:42] -rw-------. 1 boincer umatlas 933442869 Nov 21 22:05 HITS.pool.root.1
[2025-11-21 22:18:42] -rw-------. 1 boincer umatlas  13854720 Nov 21 22:18 result.tar.gz
22:18:44 (2882765): run_atlas exited; CPU time 342327.364349
22:18:44 (2882765): called boinc_finish(0)

</stderr_txt>
]]>

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