Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:00:24 (2898637): wrapper (7.7.26015): starting
00:00:24 (2898637): wrapper: running run_atlas (--nthreads 9)
[2025-11-20 00:00:24] Arguments: --nthreads 9
[2025-11-20 00:00:24] Threads: 9
[2025-11-20 00:00:24] Checking for CVMFS
[2025-11-20 00:00:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:00:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:00:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:00:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:00:27] 2.13.3.0 10079 19265 392176 153069 1 684 28398429 32935937 44489 16776704 0 222655331 99.800 111434803 29447 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 00:00:27] CVMFS is ok
[2025-11-20 00:00:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:00:27] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:00:27] Further information can be found at the LHC@home message board.
[2025-11-20 00:00:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:00:27] Checking for apptainer binary...
[2025-11-20 00:00:27] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:00:27] Running /usr/bin/apptainer --version
[2025-11-20 00:00:27] apptainer version 1.4.4-1.el9
[2025-11-20 00:00:27] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:00:27] lc-12-33.aglt2.org
[2025-11-20 00:00:27] apptainer works
[2025-11-20 00:00:28] Set ATHENA_PROC_NUMBER=9
[2025-11-20 00:00:28] Set ATHENA_CORE_NUMBER=9
[2025-11-20 00:00:28] Starting ATLAS job with PandaID=6891601595
[2025-11-20 00:00:28] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
15:20:14 (2898637): BOINC client no longer exists - exiting
15:20:14 (2898637): timer handler: client dead, exiting
15:27:11 (3411787): wrapper (7.7.26015): starting
15:27:11 (3411787): wrapper: running run_atlas (--nthreads 11)
[2025-11-20 15:27:11] Arguments: --nthreads 11
[2025-11-20 15:27:11] Threads: 11
[2025-11-20 15:27:11] This job has been restarted, cleaning up previous attempt
[2025-11-20 15:27:12] Checking for CVMFS
[2025-11-20 15:27:12] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 15:27:12] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 15:27:12] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 15:27:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 15:27:13] 2.13.3.0 10079 20192 396964 153095 0 428 31689765 32935937 34985 16776704 0 231328313 99.799 116300117 29324 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 15:27:13] CVMFS is ok
[2025-11-20 15:27:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 15:27:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 15:27:13] Further information can be found at the LHC@home message board.
[2025-11-20 15:27:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 15:27:13] Checking for apptainer binary...
[2025-11-20 15:27:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 15:27:13] Running /usr/bin/apptainer --version
[2025-11-20 15:27:14] apptainer version 1.4.4-1.el9
[2025-11-20 15:27:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 15:27:15] lc-12-33.aglt2.org
[2025-11-20 15:27:15] apptainer works
[2025-11-20 15:27:15] Set ATHENA_PROC_NUMBER=11
[2025-11-20 15:27:15] Set ATHENA_CORE_NUMBER=11
[2025-11-20 15:27:15] Starting ATLAS job with PandaID=6891601595
[2025-11-20 15:27:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 03:12:14]  *** The last 200 lines of the pilot log: ***
[2025-11-22 03:12:14] 2025-11-22 07:52:09,119 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:12:14] 2025-11-22 07:52:09,173 | INFO     | PID=3428445 has CPU usage=4.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 03:12:14] 2025-11-22 07:52:09,173 | INFO     | .. there are 65 such processes running
[2025-11-22 03:12:14] 2025-11-22 07:52:10,193 | INFO     | time since job start (127444s) is within the limit (172800.0s)
[2025-11-22 03:12:14] 2025-11-22 07:52:11,640 | INFO     | monitor loop #5519: job 0:6891601595 is in state 'finished'
[2025-11-22 03:12:14] 2025-11-22 07:52:11,640 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:12:14] 2025-11-22 07:52:12,224 | INFO     | time since job start (127446s) is within the limit (172800.0s)
[2025-11-22 03:12:14] 2025-11-22 07:52:14,148 | INFO     | monitor loop #5520: job 0:6891601595 is in state 'finished'
[2025-11-22 03:12:14] 2025-11-22 07:52:14,148 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:12:14] 2025-11-22 07:52:14,239 | INFO     | time since job start (127448s) is within the limit (172800.0s)
[2025-11-22 03:12:14] 2025-11-22 07:52:16,246 | INFO     | time since job start (127450s) is within the limit (172800.0s)
[2025-11-22 03:12:14] 2025-11-22 07:52:16,655 | INFO     | monitor loop #5521: job 0:6891601595 is in state 'finished'
[2025-11-22 03:12:14] 2025-11-22 07:52:16,656 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:12:14] 2025-11-22 07:52:18,270 | INFO     | time since job start (127452s) is within the limit (172800.0s)
[2025-11-22 03:12:14] 2025-11-22 07:52:18,917 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-22 03:12:14] 2025-11-22 07:52:18,931 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2656.163333333334
[2025-11-22 03:12:14] 2025-11-22 07:52:19,035 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891601595/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 03:12:14] 2025-11-22 07:52:19,050 | INFO     | extracted standard info from prmon json
[2025-11-22 03:12:14] 2025-11-22 07:52:19,050 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 03:12:14] 2025-11-22 07:52:19,051 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 03:12:14] 2025-11-22 07:52:19,197 | INFO     | monitor loop #5522: job 0:6891601595 is in state 'finished'
[2025-11-22 03:12:14] 2025-11-22 07:52:19,198 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 03:12:14] 2025-11-22 07:52:19,389 | INFO     | fitting pss+swap vs Time
[2025-11-22 03:12:14] 2025-11-22 07:52:19,392 | INFO     | sum of square deviations: 2818805770411.272
[2025-11-22 03:12:14] 2025-11-22 07:52:20,008 | INFO     | sum of deviations: 9897426891983.34
[2025-11-22 03:12:14] 2025-11-22 07:52:20,009 | INFO     | mean x: 1763734214.8021083
[2025-11-22 03:12:14] 2025-11-22 07:52:20,009 | INFO     | mean y: 3459150.017728797
[2025-11-22 03:12:14] 2025-11-22 07:52:20,009 | INFO     | intersect: -6189386994.662386
[2025-11-22 03:12:14] 2025-11-22 07:52:20,022 | INFO     | chi2: 27.449419303537876
[2025-11-22 03:12:14] 2025-11-22 07:52:20,058 | INFO     | sum of square deviations: 2798598994463.6714
[2025-11-22 03:12:14] 2025-11-22 07:52:20,369 | INFO     | time since job start (127454s) is within the limit (172800.0s)
[2025-11-22 03:12:14] 2025-11-22 07:52:20,619 | INFO     | sum of deviations: 10756021962606.111
[2025-11-22 03:12:14] 2025-11-22 07:52:20,619 | INFO     | mean x: 1763734062.315562
[2025-11-22 03:12:14] 2025-11-22 07:52:20,619 | INFO     | mean y: 3465628.65129683
[2025-11-22 03:12:14] 2025-11-22 07:52:20,619 | INFO     | intersect: -6775198391.450045
[2025-11-22 03:12:14] 2025-11-22 07:52:20,622 | INFO     | chi2: 23.956579607498163
[2025-11-22 03:12:14] 2025-11-22 07:52:20,622 | INFO     | current chi2=23.956579607498163 (change=12.724639663286178 %)
[2025-11-22 03:12:14] 2025-11-22 07:52:20,622 | INFO     | right removable region: 2081
[2025-11-22 03:12:14] 2025-11-22 07:52:20,640 | INFO     | sum of square deviations: 2798591735270.0454
[2025-11-22 03:12:14] 2025-11-22 07:52:21,043 | INFO     | sum of deviations: 9017455684127.354
[2025-11-22 03:12:14] 2025-11-22 07:52:21,044 | INFO     | mean x: 1763734367.3160422
[2025-11-22 03:12:14] 2025-11-22 07:52:21,044 | INFO     | mean y: 3465787.8611911624
[2025-11-22 03:12:14] 2025-11-22 07:52:21,044 | INFO     | intersect: -5679534092.187457
[2025-11-22 03:12:14] 2025-11-22 07:52:21,046 | INFO     | chi2: 24.381372835464884
[2025-11-22 03:12:14] 2025-11-22 07:52:21,047 | INFO     | current chi2=24.381372835464884 (change=11.17709061217758 %)
[2025-11-22 03:12:14] 2025-11-22 07:52:21,047 | INFO     | left removable region: 10
[2025-11-22 03:12:14] 2025-11-22 07:52:21,049 | INFO     | sum of square deviations: 2754471914319.4863
[2025-11-22 03:12:14] 2025-11-22 07:52:21,136 | INFO     | sum of deviations: 9733657396434.357
[2025-11-22 03:12:14] 2025-11-22 07:52:21,136 | INFO     | mean x: 1763734336.8377595
[2025-11-22 03:12:14] 2025-11-22 07:52:21,136 | INFO     | mean y: 3475873.6706904876
[2025-11-22 03:12:14] 2025-11-22 07:52:21,136 | INFO     | intersect: -6229147404.808985
[2025-11-22 03:12:14] 2025-11-22 07:52:21,139 | INFO     | chi2: 20.017888574088428
[2025-11-22 03:12:14] 2025-11-22 07:52:21,139 | INFO     | current memory leak: 3.53 B/s (using 2071 data points, chi2=20.02)
[2025-11-22 03:12:14] 2025-11-22 07:52:21,141 | INFO     | could have reported an average CPU frequency of 2653 MHz (72 samples)
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | ..............................
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . Timing measurements:
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . get job = 0 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . initial setup = 3 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . payload setup = 33 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . stage-in = 0 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . payload execution = 127320 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . stage-out = 12 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | . log creation = 4 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,142 | INFO     | ..............................
[2025-11-22 03:12:14] 2025-11-22 07:52:21,740 | INFO     | 
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | job summary report
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | --------------------------------------------------
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | PanDA job id: 6891601595
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | task id: 47493068
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | errors: (none)
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | pilot state: finished 
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | transexitcode: 0
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | exeerrorcode: 0
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | exeerrordiag: 
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | exitcode: 0
[2025-11-22 03:12:14] 2025-11-22 07:52:21,741 | INFO     | exitmsg: OK
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | cpuconsumptiontime: 267133 s
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | nevents: 1000
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | neventsw: 0
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | pid: 3456730
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | pgrp: 3456730
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | corecount: 11
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | event service: False
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | sizes: {0: 2298568, 1: 2298823, 2: 2298823, 13: 2298851, 21: 2299169, 24: 2299197, 127358: 2378994, 127371: 2387988, 127375: 2388044, 127411: 2388290}
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | --------------------------------------------------
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | 
[2025-11-22 03:12:14] 2025-11-22 07:52:21,742 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,836 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,837 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 03:12:14] 2025-11-22 07:52:21,838 | INFO     | job 6891601595 has completed (purged errors)
[2025-11-22 03:12:14] 2025-11-22 07:52:21,838 | INFO     | overall cleanup function is called
[2025-11-22 03:12:14] 2025-11-22 07:52:22,872 | INFO     | --- collectZombieJob: --- 10, [3456730]
[2025-11-22 03:12:14] 2025-11-22 07:52:22,872 | INFO     | zombie collector waiting for pid 3456730
[2025-11-22 03:12:14] 2025-11-22 07:52:22,873 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 03:12:14] 2025-11-22 07:52:22,873 | INFO     | collected zombie processes
[2025-11-22 03:12:14] 2025-11-22 07:52:22,873 | INFO     | will attempt to kill all subprocesses of pid=3456730
[2025-11-22 03:12:14] 2025-11-22 07:52:24,123 | INFO     | process IDs to be killed: [3456730] (in reverse order)
[2025-11-22 03:12:14] 2025-11-22 07:52:24,881 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 03:12:14] 2025-11-22 07:52:24,882 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 03:12:14] 2025-11-22 07:52:25,072 | INFO     | did not find any defunct processes belonging to 3456730
[2025-11-22 03:12:14] 2025-11-22 07:52:25,353 | INFO     | did not find any defunct processes belonging to 3456730
[2025-11-22 03:12:14] 2025-11-22 07:52:25,378 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 03:12:14] 2025-11-22 07:52:25,379 | INFO     | ready for new job
[2025-11-22 03:12:14] 2025-11-22 07:52:25,379 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 03:12:14] 2025-11-22 07:52:25,391 | INFO     | ***************************************
[2025-11-22 03:12:14] 2025-11-22 07:52:25,391 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 03:12:14] 2025-11-22 07:52:25,391 | INFO     | ***************************************
[2025-11-22 03:12:14] 2025-11-22 07:52:25,391 | INFO     | 
[2025-11-22 03:12:14] 2025-11-22 07:52:25,397 | INFO     | architecture information:
[2025-11-22 03:12:14] 2025-11-22 07:52:25,418 | INFO     | executing command: cat /etc/os-release
[2025-11-22 03:12:14] 2025-11-22 07:52:25,545 | INFO     | cat /etc/os-release:
[2025-11-22 03:12:14] NAME="CentOS Linux"
[2025-11-22 03:12:14] VERSION="7 (Core)"
[2025-11-22 03:12:14] ID="centos"
[2025-11-22 03:12:14] ID_LIKE="rhel fedora"
[2025-11-22 03:12:14] VERSION_ID="7"
[2025-11-22 03:12:14] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 03:12:14] ANSI_COLOR="0;31"
[2025-11-22 03:12:14] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 03:12:14] HOME_URL="https://www.centos.org/"
[2025-11-22 03:12:14] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 03:12:14] 
[2025-11-22 03:12:14] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 03:12:14] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 03:12:14] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 03:12:14] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 03:12:14] 
[2025-11-22 03:12:14] 2025-11-22 07:52:25,545 | INFO     | ***************************************
[2025-11-22 03:12:14] 2025-11-22 07:52:26,048 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-22 03:12:14] 2025-11-22 07:52:26,161 | INFO     | sufficient remaining disk space (60086550528 B)
[2025-11-22 03:12:14] 2025-11-22 07:52:26,161 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 03:12:14] 2025-11-22 07:52:26,161 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 03:12:14] 2025-11-22 07:52:26,161 | INFO     | update_server=False
[2025-11-22 03:12:14] 2025-11-22 07:52:26,161 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 03:12:14] 2025-11-22 07:52:26,167 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:12:14] 2025-11-22 07:52:26,168 | INFO     | aborting loop
[2025-11-22 03:12:14] 2025-11-22 07:52:26,362 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 03:12:14] 2025-11-22 07:52:26,591 | INFO     | all job control threads have been joined
[2025-11-22 03:12:14] 2025-11-22 07:52:26,685 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 03:12:14] 2025-11-22 07:52:26,767 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 03:12:14] 2025-11-22 07:52:27,101 | INFO     | all data control threads have been joined
[2025-11-22 03:12:14] 2025-11-22 07:52:27,166 | INFO     | [job] retrieve thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:27,175 | INFO     | [job] job monitor thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:27,229 | INFO     | [job] validate thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:27,257 | INFO     | all payload control threads have been joined
[2025-11-22 03:12:14] 2025-11-22 07:52:27,368 | INFO     | [job] queue monitor thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:27,454 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:27,597 | INFO     | [job] control thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:27,768 | INFO     | [data] copytool_in thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:27,872 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:28,107 | INFO     | [data] control thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:28,130 | INFO     | [payload] validate_post thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:28,206 | INFO     | [payload] failed_post thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:28,263 | INFO     | [payload] control thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:28,267 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:28,374 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:28,774 | INFO     | [data] copytool_out thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:30,693 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 03:12:14] 2025-11-22 07:52:57,872 | INFO     | PID=3428445 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 03:12:14] 2025-11-22 07:52:57,873 | INFO     | .. there are 65 such processes running
[2025-11-22 03:12:14] 2025-11-22 07:52:57,878 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 03:12:14] 2025-11-22 07:52:57,879 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 03:12:14] 2025-11-22 07:52:57,879 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 03:12:14] 2025-11-22 07:53:20,771 | INFO     | [monitor] cgroup control has ended
[2025-11-22 03:12:14] 2025-11-22 07:53:21,781 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140216691894080)>', '<ExcThread(monitor, started 140216337667840)>']
[2025-11-22 03:12:14] 2025-11-22 07:53:22,067 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 03:12:14] 2025-11-22 07:53:22,067 | INFO     | [monitor] control thread has ended
[2025-11-22 03:12:14] 2025-11-22 07:53:26,815 | INFO     | all workflow threads have been joined
[2025-11-22 03:12:14] 2025-11-22 07:53:26,816 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 03:12:14] 2025-11-22 07:53:26,816 | INFO     | traces error code: 0
[2025-11-22 03:12:14] 2025-11-22 07:53:26,816 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 03:12:14] 2025-11-22 07:53:28,638 [wrapper] ==== pilot stdout END ====
[2025-11-22 03:12:14] 2025-11-22 07:53:28,662 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 03:12:14] 2025-11-22 07:53:28,712 [wrapper] pilotpid: 3428445
[2025-11-22 03:12:14] 2025-11-22 07:53:28,725 [wrapper] Pilot exit status: 0
[2025-11-22 03:12:14] 2025-11-22 07:53:28,803 [wrapper] pandaids: 6891601595 6891601595
[2025-11-22 03:12:14] 2025-11-22 07:53:29,159 [wrapper] cleanup supervisor_pilot 3574138 3428446
[2025-11-22 03:12:14] 2025-11-22 07:53:29,182 [wrapper] Test setup, not cleaning
[2025-11-22 03:12:14] 2025-11-22 07:53:29,198 [wrapper] apfmon messages muted
[2025-11-22 03:12:14] 2025-11-22 07:53:29,255 [wrapper] ==== wrapper stdout END ====
[2025-11-22 03:12:14] 2025-11-22 07:53:29,276 [wrapper] ==== wrapper stderr END ====
[2025-11-22 03:12:14]  *** Error codes and diagnostics ***
[2025-11-22 03:12:14]     "exeErrorCode": 0,
[2025-11-22 03:12:14]     "exeErrorDiag": "",
[2025-11-22 03:12:14]     "pilotErrorCode": 0,
[2025-11-22 03:12:14]     "pilotErrorDiag": "",
[2025-11-22 03:12:14]  *** Listing of results directory ***
[2025-11-22 03:12:14] total 1738592
[2025-11-22 03:12:14] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:10 queuedata.json
[2025-11-22 03:12:14] -rwx------. 1 boincer umatlas     36292 Nov 18 14:10 runpilot2-wrapper.sh
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:00 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 03:12:14] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:00 run_atlas
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:00 job.xml
[2025-11-22 03:12:14] -rw-r--r--. 3 boincer umatlas 410946239 Nov 20 00:00 EVNT.47493065._000835.pool.root.1
[2025-11-22 03:12:14] -rw-r--r--. 3 boincer umatlas 410946239 Nov 20 00:00 ATLAS.root_0
[2025-11-22 03:12:14] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:00 start_atlas.sh
[2025-11-22 03:12:14] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:00 shared
[2025-11-22 03:12:14] -rw-r--r--. 2 boincer umatlas    590099 Nov 20 00:00 input.tar.gz
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:00 boinc_lockfile
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas      2772 Nov 20 15:27 pandaJob.out
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas    989464 Nov 20 15:28 agis_schedconf.cvmfs.json
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas       534 Nov 22 02:09 boinc_task_state.xml
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas 922072915 Nov 22 02:49 HITS.47493068._006999.pool.root.1
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas      1059 Nov 22 02:51 memory_monitor_summary.json
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas   1526164 Nov 22 02:51 agis_ddmendpoints.agis.ALL.json
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas   3044417 Nov 22 02:51 log.47493068._006999.job.log.tgz.1
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas      8627 Nov 22 02:52 heartbeat.json
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas        96 Nov 22 02:52 pilot_heartbeat.json
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas      4824 Nov 22 02:53 pilotlog.txt
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas  13167588 Nov 22 02:53 log.47493068._006999.job.log.1
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas       353 Nov 22 02:53 output.list
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas       620 Nov 22 02:53 runtime_log
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas  16230400 Nov 22 02:53 result.tar.gz
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas       788 Nov 22 02:53 sENKDmYHgf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmXlFKDm1Ls6No.diag
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas      8792 Nov 22 02:53 runtime_log.err
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas      6886 Nov 22 03:11 init_data.xml
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas        30 Nov 22 03:11 wrapper_checkpoint.txt
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 03:12 boinc_mmap_file
[2025-11-22 03:12:14] -rw-r--r--. 1 boincer umatlas     24184 Nov 22 03:12 stderr.txt
[2025-11-22 03:12:14] HITS file was successfully produced:
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas 922072915 Nov 22 02:49 shared/HITS.pool.root.1
[2025-11-22 03:12:14]  *** Contents of shared directory: ***
[2025-11-22 03:12:14] total 1318236
[2025-11-22 03:12:14] -rw-r--r--. 3 boincer umatlas 410946239 Nov 20 00:00 ATLAS.root_0
[2025-11-22 03:12:14] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:00 start_atlas.sh
[2025-11-22 03:12:14] -rw-r--r--. 2 boincer umatlas    590099 Nov 20 00:00 input.tar.gz
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas 922072915 Nov 22 02:49 HITS.pool.root.1
[2025-11-22 03:12:14] -rw-------. 1 boincer umatlas  16230400 Nov 22 02:53 result.tar.gz
03:12:15 (3411787): run_atlas exited; CPU time 272675.390544
03:12:15 (3411787): called boinc_finish(0)

</stderr_txt>
]]>

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