Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:37 (3542770): wrapper (7.7.26015): starting
00:03:37 (3542770): wrapper: running run_atlas (--nthreads 9)
[2025-11-20 00:03:37] Arguments: --nthreads 9
[2025-11-20 00:03:37] Threads: 9
[2025-11-20 00:03:37] Checking for CVMFS
[2025-11-20 00:03:39] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:03:39] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:03:39] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:03:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:03:42] 2.13.3.0 9863 20831 321956 153069 0 433 20179063 32935936 21452 16776704 0 126622500 99.811 63774929 34229 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 00:03:42] CVMFS is ok
[2025-11-20 00:03:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:03:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:03:42] Further information can be found at the LHC@home message board.
[2025-11-20 00:03:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:03:42] Checking for apptainer binary...
[2025-11-20 00:03:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:03:42] Running /usr/bin/apptainer --version
[2025-11-20 00:03:42] apptainer version 1.4.4-1.el9
[2025-11-20 00:03:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:03:43] c-5-3.aglt2.org
[2025-11-20 00:03:43] apptainer works
[2025-11-20 00:03:43] Set ATHENA_PROC_NUMBER=9
[2025-11-20 00:03:43] Set ATHENA_CORE_NUMBER=9
[2025-11-20 00:03:43] Starting ATLAS job with PandaID=6891601585
[2025-11-20 00:03:43] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 00:04:59]  *** The last 200 lines of the pilot log: ***
[2025-11-22 00:04:59] 2025-11-21 21:15:07,400 | INFO     | monitor loop #6834: job 0:6891601585 is in state 'finished'
[2025-11-22 00:04:59] 2025-11-21 21:15:07,404 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:04:59] 2025-11-21 21:15:07,684 | INFO     | time since job start (144585s) is within the limit (172800.0s)
[2025-11-22 00:04:59] 2025-11-21 21:15:09,579 | INFO     | PID=3558060 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:04:59] 2025-11-21 21:15:09,579 | INFO     | .. there are 40 such processes running
[2025-11-22 00:04:59] 2025-11-21 21:15:09,908 | INFO     | monitor loop #6835: job 0:6891601585 is in state 'finished'
[2025-11-22 00:04:59] 2025-11-21 21:15:09,908 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:04:59] 2025-11-21 21:15:10,585 | INFO     | time since job start (144588s) is within the limit (172800.0s)
[2025-11-22 00:04:59] 2025-11-21 21:15:12,423 | INFO     | monitor loop #6836: job 0:6891601585 is in state 'finished'
[2025-11-22 00:04:59] 2025-11-21 21:15:12,424 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:04:59] 2025-11-21 21:15:12,610 | INFO     | time since job start (144590s) is within the limit (172800.0s)
[2025-11-22 00:04:59] 2025-11-21 21:15:14,617 | INFO     | time since job start (144592s) is within the limit (172800.0s)
[2025-11-22 00:04:59] 2025-11-21 21:15:14,932 | INFO     | monitor loop #6837: job 0:6891601585 is in state 'finished'
[2025-11-22 00:04:59] 2025-11-21 21:15:14,932 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-22 00:04:59] 2025-11-21 21:15:15,194 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-22 00:04:59] 2025-11-21 21:15:15,246 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0364750000003
[2025-11-22 00:04:59] 2025-11-21 21:15:15,272 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891601585/memory_monitor_summary.json (trf name=prmon)
[2025-11-22 00:04:59] 2025-11-21 21:15:15,293 | INFO     | extracted standard info from prmon json
[2025-11-22 00:04:59] 2025-11-21 21:15:15,293 | INFO     | extracted standard memory fields from prmon json
[2025-11-22 00:04:59] 2025-11-21 21:15:15,293 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-22 00:04:59] 2025-11-21 21:15:15,464 | INFO     | fitting pss+swap vs Time
[2025-11-22 00:04:59] 2025-11-21 21:15:15,467 | INFO     | sum of square deviations: 4112386851096.1914
[2025-11-22 00:04:59] 2025-11-21 21:15:15,797 | INFO     | sum of deviations: 9823054207397.938
[2025-11-22 00:04:59] 2025-11-21 21:15:15,797 | INFO     | mean x: 1763687508.722856
[2025-11-22 00:04:59] 2025-11-21 21:15:15,797 | INFO     | mean y: 3156722.220954795
[2025-11-22 00:04:59] 2025-11-21 21:15:15,797 | INFO     | intersect: -4209676026.837458
[2025-11-22 00:04:59] 2025-11-21 21:15:15,800 | INFO     | chi2: 23.566136145833234
[2025-11-22 00:04:59] 2025-11-21 21:15:15,803 | INFO     | sum of square deviations: 4086385619323.396
[2025-11-22 00:04:59] 2025-11-21 21:15:16,180 | INFO     | sum of deviations: 10697205255141.174
[2025-11-22 00:04:59] 2025-11-21 21:15:16,180 | INFO     | mean x: 1763687356.2324302
[2025-11-22 00:04:59] 2025-11-21 21:15:16,181 | INFO     | mean y: 3161848.3111769687
[2025-11-22 00:04:59] 2025-11-21 21:15:16,181 | INFO     | intersect: -4613760638.470533
[2025-11-22 00:04:59] 2025-11-21 21:15:16,184 | INFO     | chi2: 20.382438941522928
[2025-11-22 00:04:59] 2025-11-21 21:15:16,188 | INFO     | current chi2=20.382438941522928 (change=13.509627478211868 %)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,188 | INFO     | right removable region: 2361
[2025-11-22 00:04:59] 2025-11-21 21:15:16,191 | INFO     | sum of square deviations: 4086379233056.8643
[2025-11-22 00:04:59] 2025-11-21 21:15:16,449 | INFO     | sum of deviations: 8804961143954.018
[2025-11-22 00:04:59] 2025-11-21 21:15:16,450 | INFO     | mean x: 1763687661.2320068
[2025-11-22 00:04:59] 2025-11-21 21:15:16,450 | INFO     | mean y: 3162691.9707874684
[2025-11-22 00:04:59] 2025-11-21 21:15:16,450 | INFO     | intersect: -3797072293.9539413
[2025-11-22 00:04:59] 2025-11-21 21:15:16,457 | INFO     | chi2: 19.579659092354383
[2025-11-22 00:04:59] 2025-11-21 21:15:16,457 | INFO     | current chi2=19.579659092354383 (change=16.916125022827323 %)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,457 | INFO     | left removable region: 10
[2025-11-22 00:04:59] 2025-11-21 21:15:16,464 | INFO     | sum of square deviations: 4029556266303.4165
[2025-11-22 00:04:59] 2025-11-21 21:15:16,671 | INFO     | sum of deviations: 9047340114897.158
[2025-11-22 00:04:59] 2025-11-21 21:15:16,671 | INFO     | mean x: 1763687630.752871
[2025-11-22 00:04:59] 2025-11-21 21:15:16,671 | INFO     | mean y: 3173492.0174393873
[2025-11-22 00:04:59] 2025-11-21 21:15:16,671 | INFO     | intersect: -3956736929.2102847
[2025-11-22 00:04:59] 2025-11-21 21:15:16,678 | INFO     | chi2: 13.510004000091499
[2025-11-22 00:04:59] 2025-11-21 21:15:16,679 | INFO     | current memory leak: 2.25 B/s (using 2351 data points, chi2=13.51)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,680 | INFO     | could have reported an average CPU frequency of 2600 MHz (81 samples)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,680 | INFO     | ..............................
[2025-11-22 00:04:59] 2025-11-21 21:15:16,680 | INFO     | . Timing measurements:
[2025-11-22 00:04:59] 2025-11-21 21:15:16,681 | INFO     | . get job = 1 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,681 | INFO     | . initial setup = 10 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,681 | INFO     | . payload setup = 67 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,681 | INFO     | . stage-in = 0 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,685 | INFO     | . payload execution = 144373 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,685 | INFO     | . stage-out = 11 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,685 | INFO     | . log creation = 1 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,685 | INFO     | ..............................
[2025-11-22 00:04:59] 2025-11-21 21:15:16,698 | INFO     | time since job start (144594s) is within the limit (172800.0s)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,895 | INFO     | 
[2025-11-22 00:04:59] 2025-11-21 21:15:16,895 | INFO     | job summary report
[2025-11-22 00:04:59] 2025-11-21 21:15:16,895 | INFO     | --------------------------------------------------
[2025-11-22 00:04:59] 2025-11-21 21:15:16,895 | INFO     | PanDA job id: 6891601585
[2025-11-22 00:04:59] 2025-11-21 21:15:16,895 | INFO     | task id: 47493068
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | errors: (none)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | pilot state: finished 
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | transexitcode: 0
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | exeerrorcode: 0
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | exeerrordiag: 
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | exitcode: 0
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | exitmsg: OK
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | cpuconsumptiontime: 296669 s
[2025-11-22 00:04:59] 2025-11-21 21:15:16,896 | INFO     | nevents: 1000
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | neventsw: 0
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | pid: 3581540
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | pgrp: 3581540
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | corecount: 9
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | event service: False
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | sizes: {0: 2296371, 2: 2296972, 3: 2297056, 4: 2297084, 5: 2297084, 6: 2297311, 8: 2297467, 19: 2297495, 30: 2297523, 42: 2297551, 54: 2297607, 55: 2298177, 65: 22
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | --------------------------------------------------
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | 
[2025-11-22 00:04:59] 2025-11-21 21:15:16,897 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-22 00:04:59] 2025-11-21 21:15:16,915 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,916 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,917 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,918 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-22 00:04:59] 2025-11-21 21:15:16,918 | INFO     | job 6891601585 has completed (purged errors)
[2025-11-22 00:04:59] 2025-11-21 21:15:16,918 | INFO     | overall cleanup function is called
[2025-11-22 00:04:59] 2025-11-21 21:15:17,935 | INFO     | --- collectZombieJob: --- 10, [3581540]
[2025-11-22 00:04:59] 2025-11-21 21:15:17,940 | INFO     | zombie collector waiting for pid 3581540
[2025-11-22 00:04:59] 2025-11-21 21:15:17,940 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-22 00:04:59] 2025-11-21 21:15:17,940 | INFO     | collected zombie processes
[2025-11-22 00:04:59] 2025-11-21 21:15:17,940 | INFO     | will attempt to kill all subprocesses of pid=3581540
[2025-11-22 00:04:59] 2025-11-21 21:15:18,607 | INFO     | process IDs to be killed: [3581540] (in reverse order)
[2025-11-22 00:04:59] 2025-11-21 21:15:18,798 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 00:04:59] 2025-11-21 21:15:18,799 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 00:04:59] 2025-11-21 21:15:18,904 | INFO     | did not find any defunct processes belonging to 3581540
[2025-11-22 00:04:59] 2025-11-21 21:15:18,952 | INFO     | did not find any defunct processes belonging to 3581540
[2025-11-22 00:04:59] 2025-11-21 21:15:18,954 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 00:04:59] 2025-11-21 21:15:18,954 | INFO     | ready for new job
[2025-11-22 00:04:59] 2025-11-21 21:15:18,954 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 00:04:59] 2025-11-21 21:15:18,966 | INFO     | ***************************************
[2025-11-22 00:04:59] 2025-11-21 21:15:18,966 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 00:04:59] 2025-11-21 21:15:18,966 | INFO     | ***************************************
[2025-11-22 00:04:59] 2025-11-21 21:15:18,973 | INFO     | 
[2025-11-22 00:04:59] 2025-11-21 21:15:18,976 | INFO     | architecture information:
[2025-11-22 00:04:59] 2025-11-21 21:15:18,976 | INFO     | executing command: cat /etc/os-release
[2025-11-22 00:04:59] 2025-11-21 21:15:19,006 | INFO     | cat /etc/os-release:
[2025-11-22 00:04:59] NAME="CentOS Linux"
[2025-11-22 00:04:59] VERSION="7 (Core)"
[2025-11-22 00:04:59] ID="centos"
[2025-11-22 00:04:59] ID_LIKE="rhel fedora"
[2025-11-22 00:04:59] VERSION_ID="7"
[2025-11-22 00:04:59] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 00:04:59] ANSI_COLOR="0;31"
[2025-11-22 00:04:59] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 00:04:59] HOME_URL="https://www.centos.org/"
[2025-11-22 00:04:59] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 00:04:59] 
[2025-11-22 00:04:59] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 00:04:59] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 00:04:59] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 00:04:59] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 00:04:59] 
[2025-11-22 00:04:59] 2025-11-21 21:15:19,007 | INFO     | ***************************************
[2025-11-22 00:04:59] 2025-11-21 21:15:19,510 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-22 00:04:59] 2025-11-21 21:15:19,609 | INFO     | sufficient remaining disk space (72173486080 B)
[2025-11-22 00:04:59] 2025-11-21 21:15:19,610 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 00:04:59] 2025-11-21 21:15:19,610 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 00:04:59] 2025-11-21 21:15:19,610 | INFO     | update_server=False
[2025-11-22 00:04:59] 2025-11-21 21:15:19,610 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 00:04:59] 2025-11-21 21:15:19,619 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 00:04:59] 2025-11-21 21:15:20,005 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-22 00:04:59] 2025-11-21 21:15:20,006 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-22 00:04:59] 2025-11-21 21:15:20,006 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:04:59] 2025-11-21 21:15:20,006 | INFO     | will abort loop
[2025-11-22 00:04:59] 2025-11-21 21:15:20,155 | INFO     | all payload control threads have been joined
[2025-11-22 00:04:59] 2025-11-21 21:15:20,459 | INFO     | all job control threads have been joined
[2025-11-22 00:04:59] 2025-11-21 21:15:20,478 | INFO     | all data control threads have been joined
[2025-11-22 00:04:59] 2025-11-21 21:15:20,616 | INFO     | [job] retrieve thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:20,749 | INFO     | [payload] validate_post thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:20,810 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 00:04:59] 2025-11-21 21:15:21,014 | INFO     | [job] job monitor thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,161 | INFO     | [payload] control thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,394 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,415 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,429 | INFO     | [payload] failed_post thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,465 | INFO     | [job] control thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,501 | INFO     | [data] control thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,609 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:21,922 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 00:04:59] 2025-11-21 21:15:22,001 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:22,075 | INFO     | [job] validate thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:22,082 | INFO     | [data] copytool_in thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:22,818 | INFO     | [data] copytool_out thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:22,928 | INFO     | [job] queue monitor thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:23,633 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 00:04:59] 2025-11-21 21:15:50,527 | INFO     | PID=3558060 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-22 00:04:59] 2025-11-21 21:15:50,527 | INFO     | .. there are 39 such processes running
[2025-11-22 00:04:59] 2025-11-21 21:15:50,527 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 00:04:59] 2025-11-21 21:15:50,527 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 00:04:59] 2025-11-21 21:15:50,528 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 00:04:59] 2025-11-21 21:15:51,607 | INFO     | [monitor] cgroup control has ended
[2025-11-22 00:04:59] 2025-11-21 21:15:52,320 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139917186934592)>', '<ExcThread(monitor, started 139916453332736)>']
[2025-11-22 00:04:59] 2025-11-21 21:15:52,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 00:04:59] 2025-11-21 21:15:52,539 | INFO     | [monitor] control thread has ended
[2025-11-22 00:04:59] 2025-11-21 21:15:57,346 | INFO     | all workflow threads have been joined
[2025-11-22 00:04:59] 2025-11-21 21:15:57,346 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 00:04:59] 2025-11-21 21:15:57,347 | INFO     | traces error code: 0
[2025-11-22 00:04:59] 2025-11-21 21:15:57,348 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 00:04:59] 2025-11-21 21:15:57,627 [wrapper] ==== pilot stdout END ====
[2025-11-22 00:04:59] 2025-11-21 21:15:57,680 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 00:04:59] 2025-11-21 21:15:57,682 [wrapper] pilotpid: 3558060
[2025-11-22 00:04:59] 2025-11-21 21:15:57,686 [wrapper] Pilot exit status: 0
[2025-11-22 00:04:59] 2025-11-21 21:15:57,881 [wrapper] pandaids: 6891601585
[2025-11-22 00:04:59] 2025-11-21 21:15:58,139 [wrapper] cleanup supervisor_pilot 3312544 3558061
[2025-11-22 00:04:59] 2025-11-21 21:15:58,166 [wrapper] Test setup, not cleaning
[2025-11-22 00:04:59] 2025-11-21 21:15:58,203 [wrapper] apfmon messages muted
[2025-11-22 00:04:59] 2025-11-21 21:15:58,237 [wrapper] ==== wrapper stdout END ====
[2025-11-22 00:04:59] 2025-11-21 21:15:58,260 [wrapper] ==== wrapper stderr END ====
[2025-11-22 00:04:59]  *** Error codes and diagnostics ***
[2025-11-22 00:04:59]     "exeErrorCode": 0,
[2025-11-22 00:04:59]     "exeErrorDiag": "",
[2025-11-22 00:04:59]     "pilotErrorCode": 0,
[2025-11-22 00:04:59]     "pilotErrorDiag": "",
[2025-11-22 00:04:59]  *** Listing of results directory ***
[2025-11-22 00:04:59] total 1327144
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:10 queuedata.json
[2025-11-22 00:04:59] -rwx------. 1 boincer umatlas     36292 Nov 18 14:10 runpilot2-wrapper.sh
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 00:04:59] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:03 run_atlas
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:03 job.xml
[2025-11-22 00:04:59] -rw-r--r--. 2 boincer umatlas 409810729 Nov 20 00:03 EVNT.47493065._000834.pool.root.1
[2025-11-22 00:04:59] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:03 start_atlas.sh
[2025-11-22 00:04:59] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:03 shared
[2025-11-22 00:04:59] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:03 input.tar.gz
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:03 boinc_lockfile
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas      2772 Nov 20 00:03 pandaJob.out
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas    989427 Nov 20 00:05 agis_schedconf.cvmfs.json
[2025-11-22 00:04:59] drwx------. 5 boincer umatlas      4096 Nov 20 00:05 pilot3
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas       533 Nov 21 15:35 boinc_task_state.xml
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas 907472634 Nov 21 16:13 HITS.47493068._006989.pool.root.1
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas      1077 Nov 21 16:14 memory_monitor_summary.json
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas   1526164 Nov 21 16:14 agis_ddmendpoints.agis.ALL.json
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas   3079045 Nov 21 16:14 log.47493068._006989.job.log.tgz.1
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas        95 Nov 21 16:15 pilot_heartbeat.json
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas      8656 Nov 21 16:15 heartbeat.json
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas      5010 Nov 21 16:15 pilotlog.txt
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas  15814689 Nov 21 16:15 log.47493068._006989.job.log.1
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas       353 Nov 21 16:15 output.list
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas       620 Nov 21 16:15 runtime_log
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas  18913280 Nov 21 16:15 result.tar.gz
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas      8690 Nov 21 16:15 runtime_log.err
[2025-11-22 00:04:59] -rw-------. 1 boincer umatlas       661 Nov 21 16:15 HOFKDm1Ggf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUlFKDmyqkXBo.diag
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas      6707 Nov 22 00:04 init_data.xml
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas      8192 Nov 22 00:04 boinc_mmap_file
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas        29 Nov 22 00:04 wrapper_checkpoint.txt
[2025-11-22 00:04:59] -rw-r--r--. 1 boincer umatlas     21633 Nov 22 00:04 stderr.txt
[2025-11-22 00:05:00] HITS file was successfully produced:
[2025-11-22 00:05:00] -rw-------. 1 boincer umatlas 907472634 Nov 21 16:13 shared/HITS.pool.root.1
[2025-11-22 00:05:00]  *** Contents of shared directory: ***
[2025-11-22 00:05:00] total 1305488
[2025-11-22 00:05:00] -rw-r--r--. 2 boincer umatlas 409810729 Nov 20 00:03 ATLAS.root_0
[2025-11-22 00:05:00] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:03 start_atlas.sh
[2025-11-22 00:05:00] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:03 input.tar.gz
[2025-11-22 00:05:00] -rw-------. 1 boincer umatlas 907472634 Nov 21 16:13 HITS.pool.root.1
[2025-11-22 00:05:00] -rw-------. 1 boincer umatlas  18913280 Nov 21 16:15 result.tar.gz
00:05:01 (3542770): run_atlas exited; CPU time 300586.342690
00:05:01 (3542770): called boinc_finish(0)

</stderr_txt>
]]>

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