Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:05:37 (562654): wrapper (7.7.26015): starting
00:05:37 (562654): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 00:05:37] Arguments: --nthreads 8
[2025-11-19 00:05:37] Threads: 8
[2025-11-19 00:05:37] Checking for CVMFS
[2025-11-19 00:05:38] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:05:38] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:05:38] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:05:39] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:05:39] 2.13.3.0 10223 19505 138480 153030 0 620 32447293 40960000 42778 16776704 0 249631711 99.778 142534675 52337 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-19 00:05:39] CVMFS is ok
[2025-11-19 00:05:39] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:05:39] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:05:39] Further information can be found at the LHC@home message board.
[2025-11-19 00:05:39] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:05:39] Checking for apptainer binary...
[2025-11-19 00:05:39] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:05:39] Running /usr/bin/apptainer --version
[2025-11-19 00:05:39] apptainer version 1.4.4-1.el9
[2025-11-19 00:05:39] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:05:40] c8-7-6.aglt2.org
[2025-11-19 00:05:40] apptainer works
[2025-11-19 00:05:40] Set ATHENA_PROC_NUMBER=8
[2025-11-19 00:05:40] Set ATHENA_CORE_NUMBER=8
[2025-11-19 00:05:40] Starting ATLAS job with PandaID=6891572716
[2025-11-19 00:05:40] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/14 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 13:24:02]  *** The last 200 lines of the pilot log: ***
[2025-11-19 13:24:02] 2025-11-19 18:23:14,592 | INFO     | job 6891572716 has finished - writing final server update
[2025-11-19 13:24:02] 2025-11-19 18:23:14,592 | INFO     | total number of processed events: 1000 (read)
[2025-11-19 13:24:02] 2025-11-19 18:23:14,593 | INFO     | executing command: lscpu
[2025-11-19 13:24:02] 2025-11-19 18:23:14,839 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-19 13:24:02] 2025-11-19 18:23:15,093 | INFO     | time since job start (47753s) is within the limit (172800.0s)
[2025-11-19 13:24:02] 2025-11-19 18:23:16,956 | INFO     | monitor loop #2633: job 0:6891572716 is in state 'finished'
[2025-11-19 13:24:02] 2025-11-19 18:23:16,956 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 13:24:02] 2025-11-19 18:23:17,099 | INFO     | time since job start (47755s) is within the limit (172800.0s)
[2025-11-19 13:24:02] 2025-11-19 18:23:17,099 | INFO     | 47765s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-19 13:24:02] 2025-11-19 18:23:19,106 | INFO     | time since job start (47757s) is within the limit (172800.0s)
[2025-11-19 13:24:02] 2025-11-19 18:23:19,468 | INFO     | monitor loop #2634: job 0:6891572716 is in state 'finished'
[2025-11-19 13:24:02] 2025-11-19 18:23:19,468 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 13:24:02] 2025-11-19 18:23:21,113 | INFO     | time since job start (47759s) is within the limit (172800.0s)
[2025-11-19 13:24:02] 2025-11-19 18:23:21,972 | INFO     | monitor loop #2635: job 0:6891572716 is in state 'finished'
[2025-11-19 13:24:02] 2025-11-19 18:23:21,972 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,116 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-19 13:24:02] 2025-11-19 18:23:23,120 | INFO     | time since job start (47761s) is within the limit (172800.0s)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,144 | INFO     | found 64 cores (32 cores per socket, 2 sockets) HT, CPU MHz: 3788.158171874999
[2025-11-19 13:24:02] 2025-11-19 18:23:23,160 | INFO     | using path: /tmp/boinchome/slots/14/PanDA_Pilot-6891572716/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,161 | INFO     | extracted standard info from prmon json
[2025-11-19 13:24:02] 2025-11-19 18:23:23,161 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 13:24:02] 2025-11-19 18:23:23,161 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 13:24:02] 2025-11-19 18:23:23,168 | INFO     | fitting pss+swap vs Time
[2025-11-19 13:24:02] 2025-11-19 18:23:23,169 | INFO     | sum of square deviations: 146541875954.40146
[2025-11-19 13:24:02] 2025-11-19 18:23:23,176 | INFO     | sum of deviations: 6612640765328.929
[2025-11-19 13:24:02] 2025-11-19 18:23:23,176 | INFO     | mean x: 1763552843.478819
[2025-11-19 13:24:02] 2025-11-19 18:23:23,176 | INFO     | mean y: 3090598.05648267
[2025-11-19 13:24:02] 2025-11-19 18:23:23,176 | INFO     | intersect: -79576492702.95502
[2025-11-19 13:24:02] 2025-11-19 18:23:23,177 | INFO     | chi2: 23.6368046476858
[2025-11-19 13:24:02] 2025-11-19 18:23:23,177 | INFO     | sum of square deviations: 143738212650.99872
[2025-11-19 13:24:02] 2025-11-19 18:23:23,184 | INFO     | sum of deviations: 6922910718875.439
[2025-11-19 13:24:02] 2025-11-19 18:23:23,184 | INFO     | mean x: 1763552691.001292
[2025-11-19 13:24:02] 2025-11-19 18:23:23,184 | INFO     | mean y: 3107473.5581395347
[2025-11-19 13:24:02] 2025-11-19 18:23:23,184 | INFO     | intersect: -84935459680.31444
[2025-11-19 13:24:02] 2025-11-19 18:23:23,185 | INFO     | chi2: 20.200247672951242
[2025-11-19 13:24:02] 2025-11-19 18:23:23,185 | INFO     | current chi2=20.200247672951242 (change=14.539008237185813 %)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,185 | INFO     | right removable region: 773
[2025-11-19 13:24:02] 2025-11-19 18:23:23,185 | INFO     | sum of square deviations: 143736559550.99875
[2025-11-19 13:24:02] 2025-11-19 18:23:23,192 | INFO     | sum of deviations: 6253515732819.584
[2025-11-19 13:24:02] 2025-11-19 18:23:23,192 | INFO     | mean x: 1763552996.001292
[2025-11-19 13:24:02] 2025-11-19 18:23:23,192 | INFO     | mean y: 3110122.4211886306
[2025-11-19 13:24:02] 2025-11-19 18:23:23,192 | INFO     | intersect: -76723412625.90044
[2025-11-19 13:24:02] 2025-11-19 18:23:23,193 | INFO     | chi2: 18.375627847314494
[2025-11-19 13:24:02] 2025-11-19 18:23:23,193 | INFO     | current chi2=18.375627847314494 (change=22.258409623427717 %)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,193 | INFO     | left removable region: 10
[2025-11-19 13:24:02] 2025-11-19 18:23:23,193 | INFO     | sum of square deviations: 137693242108.70465
[2025-11-19 13:24:02] 2025-11-19 18:23:23,200 | INFO     | sum of deviations: 6271292372794.247
[2025-11-19 13:24:02] 2025-11-19 18:23:23,200 | INFO     | mean x: 1763552965.5517693
[2025-11-19 13:24:02] 2025-11-19 18:23:23,200 | INFO     | mean y: 3146740.7785058976
[2025-11-19 13:24:02] 2025-11-19 18:23:23,200 | INFO     | intersect: -80318560356.16197
[2025-11-19 13:24:02] 2025-11-19 18:23:23,200 | INFO     | chi2: 10.720164576189092
[2025-11-19 13:24:02] 2025-11-19 18:23:23,201 | INFO     | current memory leak: 45.55 B/s (using 763 data points, chi2=10.72)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,201 | INFO     | could have reported an average CPU frequency of 3774 MHz (29 samples)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,201 | INFO     | ..............................
[2025-11-19 13:24:02] 2025-11-19 18:23:23,201 | INFO     | . Timing measurements:
[2025-11-19 13:24:02] 2025-11-19 18:23:23,201 | INFO     | . get job = 1 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,202 | INFO     | . initial setup = 9 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,202 | INFO     | . payload setup = 79 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,202 | INFO     | . stage-in = 0 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,202 | INFO     | . payload execution = 47535 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,202 | INFO     | . stage-out = 3 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,202 | INFO     | . log creation = 0 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,202 | INFO     | ..............................
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | 
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | job summary report
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | --------------------------------------------------
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | PanDA job id: 6891572716
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | task id: 47493068
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | errors: (none)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | pilot state: finished 
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | transexitcode: 0
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | exeerrorcode: 0
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | exeerrordiag: 
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | exitcode: 0
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | exitmsg: OK
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | cpuconsumptiontime: 136930 s
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | nevents: 1000
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | neventsw: 0
[2025-11-19 13:24:02] 2025-11-19 18:23:23,253 | INFO     | pid: 691640
[2025-11-19 13:24:02] 2025-11-19 18:23:23,254 | INFO     | pgrp: 691640
[2025-11-19 13:24:02] 2025-11-19 18:23:23,254 | INFO     | corecount: 8
[2025-11-19 13:24:02] 2025-11-19 18:23:23,254 | INFO     | event service: False
[2025-11-19 13:24:02] 2025-11-19 18:23:23,254 | INFO     | sizes: {0: 2297201, 1: 2297229, 11: 2297229, 22: 2297257, 33: 2297285, 44: 2297341, 54: 2297497, 64: 2297787, 65: 2297843, 47617: 2344234, 47618: 2344233, 47621: 2
[2025-11-19 13:24:02] 2025-11-19 18:23:23,254 | INFO     | --------------------------------------------------
[2025-11-19 13:24:02] 2025-11-19 18:23:23,254 | INFO     | 
[2025-11-19 13:24:02] 2025-11-19 18:23:23,254 | INFO     | executing command: ls -lF /tmp/boinchome/slots/14
[2025-11-19 13:24:02] 2025-11-19 18:23:23,334 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,334 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | job 6891572716 has completed (purged errors)
[2025-11-19 13:24:02] 2025-11-19 18:23:23,335 | INFO     | overall cleanup function is called
[2025-11-19 13:24:02] 2025-11-19 18:23:24,361 | INFO     | --- collectZombieJob: --- 10, [691640]
[2025-11-19 13:24:02] 2025-11-19 18:23:24,361 | INFO     | zombie collector waiting for pid 691640
[2025-11-19 13:24:02] 2025-11-19 18:23:24,361 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 13:24:02] 2025-11-19 18:23:24,361 | INFO     | collected zombie processes
[2025-11-19 13:24:02] 2025-11-19 18:23:24,361 | INFO     | will attempt to kill all subprocesses of pid=691640
[2025-11-19 13:24:02] 2025-11-19 18:23:25,355 | INFO     | PID=601914 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 13:24:02] 2025-11-19 18:23:25,355 | INFO     | .. there are 43 such processes running
[2025-11-19 13:24:02] 2025-11-19 18:23:25,484 | INFO     | process IDs to be killed: [691640] (in reverse order)
[2025-11-19 13:24:02] 2025-11-19 18:23:25,668 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 13:24:02] 2025-11-19 18:23:25,668 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 13:24:02] 2025-11-19 18:23:25,694 | INFO     | did not find any defunct processes belonging to 691640
[2025-11-19 13:24:02] 2025-11-19 18:23:25,720 | INFO     | did not find any defunct processes belonging to 691640
[2025-11-19 13:24:02] 2025-11-19 18:23:25,721 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 13:24:02] 2025-11-19 18:23:25,721 | INFO     | ready for new job
[2025-11-19 13:24:02] 2025-11-19 18:23:25,721 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 13:24:02] 2025-11-19 18:23:25,723 | INFO     | ***************************************
[2025-11-19 13:24:02] 2025-11-19 18:23:25,723 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 13:24:02] 2025-11-19 18:23:25,723 | INFO     | ***************************************
[2025-11-19 13:24:02] 2025-11-19 18:23:25,723 | INFO     | 
[2025-11-19 13:24:02] 2025-11-19 18:23:25,727 | INFO     | architecture information:
[2025-11-19 13:24:02] 2025-11-19 18:23:25,728 | INFO     | executing command: cat /etc/os-release
[2025-11-19 13:24:02] 2025-11-19 18:23:25,743 | INFO     | cat /etc/os-release:
[2025-11-19 13:24:02] NAME="CentOS Linux"
[2025-11-19 13:24:02] VERSION="7 (Core)"
[2025-11-19 13:24:02] ID="centos"
[2025-11-19 13:24:02] ID_LIKE="rhel fedora"
[2025-11-19 13:24:02] VERSION_ID="7"
[2025-11-19 13:24:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 13:24:02] ANSI_COLOR="0;31"
[2025-11-19 13:24:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 13:24:02] HOME_URL="https://www.centos.org/"
[2025-11-19 13:24:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 13:24:02] 
[2025-11-19 13:24:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 13:24:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 13:24:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 13:24:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 13:24:02] 
[2025-11-19 13:24:02] 2025-11-19 18:23:25,744 | INFO     | ***************************************
[2025-11-19 13:24:02] 2025-11-19 18:23:26,247 | INFO     | executing command: df -mP /tmp/boinchome/slots/14
[2025-11-19 13:24:02] 2025-11-19 18:23:26,264 | INFO     | sufficient remaining disk space (157874651136 B)
[2025-11-19 13:24:02] 2025-11-19 18:23:26,264 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 13:24:02] 2025-11-19 18:23:26,264 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 13:24:02] 2025-11-19 18:23:26,264 | INFO     | update_server=False
[2025-11-19 13:24:02] 2025-11-19 18:23:26,264 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 13:24:02] 2025-11-19 18:23:26,265 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 13:24:02] 2025-11-19 18:23:26,265 | INFO     | aborting loop
[2025-11-19 13:24:02] 2025-11-19 18:23:26,265 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-19 13:24:02] 2025-11-19 18:23:26,265 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 13:24:02] 2025-11-19 18:23:26,265 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 13:24:02] 2025-11-19 18:23:26,265 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 13:24:02] 2025-11-19 18:23:26,542 | INFO     | all job control threads have been joined
[2025-11-19 13:24:02] 2025-11-19 18:23:26,927 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 13:24:02] 2025-11-19 18:23:27,209 | INFO     | all data control threads have been joined
[2025-11-19 13:24:02] 2025-11-19 18:23:27,270 | INFO     | [job] retrieve thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:27,270 | INFO     | [job] job monitor thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:27,548 | INFO     | [job] control thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:27,620 | INFO     | all payload control threads have been joined
[2025-11-19 13:24:02] 2025-11-19 18:23:27,649 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:27,797 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:27,890 | INFO     | [payload] failed_post thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,050 | INFO     | [payload] validate_post thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,215 | INFO     | [data] control thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,273 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 13:24:02] 2025-11-19 18:23:28,362 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 13:24:02] 2025-11-19 18:23:28,389 | INFO     | [data] copytool_in thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,626 | INFO     | [payload] control thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,637 | INFO     | [job] validate thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,654 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,661 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:28,933 | INFO     | [data] copytool_out thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:29,278 | INFO     | [job] queue monitor thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:32,368 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 13:24:02] 2025-11-19 18:23:54,153 | INFO     | [monitor] cgroup control has ended
[2025-11-19 13:24:02] 2025-11-19 18:23:56,180 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139850294052672)>', '<ExcThread(monitor, started 139849940055808)>']
[2025-11-19 13:24:02] 2025-11-19 18:23:56,443 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 13:24:02] 2025-11-19 18:23:56,443 | INFO     | [monitor] control thread has ended
[2025-11-19 13:24:02] 2025-11-19 18:24:01,205 | INFO     | all workflow threads have been joined
[2025-11-19 13:24:02] 2025-11-19 18:24:01,207 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 13:24:02] 2025-11-19 18:24:01,207 | INFO     | traces error code: 0
[2025-11-19 13:24:02] 2025-11-19 18:24:01,207 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 13:24:02] 2025-11-19 18:24:01,553 [wrapper] ==== pilot stdout END ====
[2025-11-19 13:24:02] 2025-11-19 18:24:01,555 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 13:24:02] 2025-11-19 18:24:01,556 [wrapper] pilotpid: 601914
[2025-11-19 13:24:02] 2025-11-19 18:24:01,560 [wrapper] Pilot exit status: 0
[2025-11-19 13:24:02] 2025-11-19 18:24:01,606 [wrapper] pandaids: 6891572716
[2025-11-19 13:24:02] 2025-11-19 18:24:01,732 [wrapper] cleanup supervisor_pilot 1988321 601918
[2025-11-19 13:24:02] 2025-11-19 18:24:01,739 [wrapper] Test setup, not cleaning
[2025-11-19 13:24:02] 2025-11-19 18:24:01,741 [wrapper] apfmon messages muted
[2025-11-19 13:24:02] 2025-11-19 18:24:01,743 [wrapper] ==== wrapper stdout END ====
[2025-11-19 13:24:02] 2025-11-19 18:24:01,745 [wrapper] ==== wrapper stderr END ====
[2025-11-19 13:24:02]  *** Error codes and diagnostics ***
[2025-11-19 13:24:02]     "exeErrorCode": 0,
[2025-11-19 13:24:02]     "exeErrorDiag": "",
[2025-11-19 13:24:02]     "pilotErrorCode": 0,
[2025-11-19 13:24:02]     "pilotErrorDiag": "",
[2025-11-19 13:24:02]  *** Listing of results directory ***
[2025-11-19 13:24:02] total 1311876
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:24 pilot3.tar.gz
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:28 queuedata.json
[2025-11-19 13:24:02] -rwx------. 1 boincer umatlas     36292 Nov 18 11:29 runpilot2-wrapper.sh
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 13:24:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:05 run_atlas
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:05 job.xml
[2025-11-19 13:24:02] -rw-r--r--. 2 boincer umatlas 407864107 Nov 19 00:05 EVNT.47493065._000349.pool.root.1
[2025-11-19 13:24:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:05 start_atlas.sh
[2025-11-19 13:24:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:05 shared
[2025-11-19 13:24:02] -rw-r--r--. 2 boincer umatlas    590103 Nov 19 00:05 input.tar.gz
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:05 boinc_lockfile
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 00:05 pandaJob.out
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas    992806 Nov 19 00:07 agis_schedconf.cvmfs.json
[2025-11-19 13:24:02] drwx------. 5 boincer umatlas      4096 Nov 19 00:07 pilot3
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas       532 Nov 19 13:17 boinc_task_state.xml
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas      7172 Nov 19 13:20 init_data.xml
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas 916224805 Nov 19 13:22 HITS.47493068._003488.pool.root.1
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas      1076 Nov 19 13:23 memory_monitor_summary.json
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas        95 Nov 19 13:23 pilot_heartbeat.json
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas   1525063 Nov 19 13:23 agis_ddmendpoints.agis.ALL.json
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas   1942334 Nov 19 13:23 log.47493068._003488.job.log.tgz.1
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas      8652 Nov 19 13:23 heartbeat.json
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas      4554 Nov 19 13:24 pilotlog.txt
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas   5726698 Nov 19 13:24 log.47493068._003488.job.log.1
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas       353 Nov 19 13:24 output.list
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 19 13:24 boinc_mmap_file
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas       620 Nov 19 13:24 runtime_log
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas   7690240 Nov 19 13:24 result.tar.gz
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas      8708 Nov 19 13:24 runtime_log.err
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas       664 Nov 19 13:24 8hvNDmOldf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmUoFKDm4oLWFm.diag
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas        28 Nov 19 13:24 wrapper_checkpoint.txt
[2025-11-19 13:24:02] -rw-r--r--. 1 boincer umatlas     21862 Nov 19 13:24 stderr.txt
[2025-11-19 13:24:02] HITS file was successfully produced:
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas 916224805 Nov 19 13:22 shared/HITS.pool.root.1
[2025-11-19 13:24:02]  *** Contents of shared directory: ***
[2025-11-19 13:24:02] total 1301176
[2025-11-19 13:24:02] -rw-r--r--. 2 boincer umatlas 407864107 Nov 19 00:05 ATLAS.root_0
[2025-11-19 13:24:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:05 start_atlas.sh
[2025-11-19 13:24:02] -rw-r--r--. 2 boincer umatlas    590103 Nov 19 00:05 input.tar.gz
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas 916224805 Nov 19 13:22 HITS.pool.root.1
[2025-11-19 13:24:02] -rw-------. 1 boincer umatlas   7690240 Nov 19 13:24 result.tar.gz
13:24:04 (562654): run_atlas exited; CPU time 137911.500800
13:24:04 (562654): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN