Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:03:59 (4120366): wrapper (7.7.26015): starting
00:03:59 (4120366): wrapper: running run_atlas (--nthreads 9)
[2025-11-19 00:03:59] Arguments: --nthreads 9
[2025-11-19 00:03:59] Threads: 9
[2025-11-19 00:03:59] Checking for CVMFS
[2025-11-19 00:04:00] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:04:01] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:04:01] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:04:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:04:02] 2.13.2.0 7533 21037 222112 153030 1 135 24128311 39288833 8939 16776704 0 9428092 99.624 11569854 35877 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:04:02] CVMFS is ok
[2025-11-19 00:04:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:04:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:04:02] Further information can be found at the LHC@home message board.
[2025-11-19 00:04:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:04:02] Checking for apptainer binary...
[2025-11-19 00:04:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:04:02] Running /usr/bin/apptainer --version
[2025-11-19 00:04:03] apptainer version 1.4.4-1.el9
[2025-11-19 00:04:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:04:04] c-211-31.aglt2.org
[2025-11-19 00:04:04] apptainer works
[2025-11-19 00:04:04] Set ATHENA_PROC_NUMBER=9
[2025-11-19 00:04:04] Set ATHENA_CORE_NUMBER=9
[2025-11-19 00:04:04] Starting ATLAS job with PandaID=6891575206
[2025-11-19 00:04:04] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:40:26]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:40:26] 2025-11-21 04:39:22,968 | INFO     | time since job start (171208s) is within the limit (172800.0s)
[2025-11-20 23:40:26] 2025-11-21 04:39:24,938 | INFO     | monitor loop #3090: job 0:6891575206 is in state 'finished'
[2025-11-20 23:40:26] 2025-11-21 04:39:24,938 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:40:26] 2025-11-21 04:39:24,978 | INFO     | time since job start (171210s) is within the limit (172800.0s)
[2025-11-20 23:40:26] 2025-11-21 04:39:26,985 | INFO     | time since job start (171212s) is within the limit (172800.0s)
[2025-11-20 23:40:26] 2025-11-21 04:39:27,444 | INFO     | monitor loop #3091: job 0:6891575206 is in state 'finished'
[2025-11-20 23:40:26] 2025-11-21 04:39:27,444 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:40:26] 2025-11-21 04:39:28,992 | INFO     | time since job start (171214s) is within the limit (172800.0s)
[2025-11-20 23:40:26] 2025-11-21 04:39:29,949 | INFO     | monitor loop #3092: job 0:6891575206 is in state 'finished'
[2025-11-20 23:40:26] 2025-11-21 04:39:29,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:40:26] 2025-11-21 04:39:30,999 | INFO     | time since job start (171216s) is within the limit (172800.0s)
[2025-11-20 23:40:26] 2025-11-21 04:39:32,458 | INFO     | monitor loop #3093: job 0:6891575206 is in state 'finished'
[2025-11-20 23:40:26] 2025-11-21 04:39:32,458 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 23:40:26] 2025-11-21 04:39:33,007 | INFO     | time since job start (171219s) is within the limit (172800.0s)
[2025-11-20 23:40:26] 2025-11-21 04:39:33,841 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-20 23:40:26] 2025-11-21 04:39:33,857 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9856
[2025-11-20 23:40:26] 2025-11-21 04:39:33,871 | INFO     | using path: /tmp/boinchome/slots/3/PanDA_Pilot-6891575206/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:40:26] 2025-11-21 04:39:33,872 | INFO     | extracted standard info from prmon json
[2025-11-20 23:40:26] 2025-11-21 04:39:33,872 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:40:26] 2025-11-21 04:39:33,872 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:40:26] 2025-11-21 04:39:33,962 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:40:26] 2025-11-21 04:39:33,966 | INFO     | sum of square deviations: 6827661058795.403
[2025-11-20 23:40:26] 2025-11-21 04:39:34,201 | INFO     | sum of deviations: 33456615845016.81
[2025-11-20 23:40:26] 2025-11-21 04:39:34,201 | INFO     | mean x: 1763614428.7934356
[2025-11-20 23:40:26] 2025-11-21 04:39:34,201 | INFO     | mean y: 2992218.25008919
[2025-11-20 23:40:26] 2025-11-21 04:39:34,202 | INFO     | intersect: -8638996587.984066
[2025-11-20 23:40:26] 2025-11-21 04:39:34,205 | INFO     | chi2: 30.02569191429241
[2025-11-20 23:40:26] 2025-11-21 04:39:34,209 | INFO     | sum of square deviations: 6791188033571.738
[2025-11-20 23:40:26] 2025-11-21 04:39:34,410 | INFO     | sum of deviations: 34428921789193.473
[2025-11-20 23:40:26] 2025-11-21 04:39:34,411 | INFO     | mean x: 1763614276.3055754
[2025-11-20 23:40:26] 2025-11-21 04:39:34,411 | INFO     | mean y: 2996283.6754824873
[2025-11-20 23:40:26] 2025-11-21 04:39:34,411 | INFO     | intersect: -8937904437.239346
[2025-11-20 23:40:26] 2025-11-21 04:39:34,415 | INFO     | chi2: 26.86663240118159
[2025-11-20 23:40:26] 2025-11-21 04:39:34,415 | INFO     | current chi2=26.86663240118159 (change=10.521188061638265 %)
[2025-11-20 23:40:26] 2025-11-21 04:39:34,415 | INFO     | right removable region: 2797
[2025-11-20 23:40:26] 2025-11-21 04:39:34,419 | INFO     | sum of square deviations: 6791176417951.721
[2025-11-20 23:40:26] 2025-11-21 04:39:34,620 | INFO     | sum of deviations: 32246325642920.223
[2025-11-20 23:40:26] 2025-11-21 04:39:34,620 | INFO     | mean x: 1763614581.3055754
[2025-11-20 23:40:26] 2025-11-21 04:39:34,621 | INFO     | mean y: 2997277.23838456
[2025-11-20 23:40:26] 2025-11-21 04:39:34,621 | INFO     | intersect: -8371117397.069327
[2025-11-20 23:40:26] 2025-11-21 04:39:34,625 | INFO     | chi2: 25.49580596099651
[2025-11-20 23:40:26] 2025-11-21 04:39:34,625 | INFO     | current chi2=25.49580596099651 (change=15.086699637851297 %)
[2025-11-20 23:40:26] 2025-11-21 04:39:34,625 | INFO     | left removable region: 10
[2025-11-20 23:40:26] 2025-11-21 04:39:34,629 | INFO     | sum of square deviations: 6711382429868.592
[2025-11-20 23:40:26] 2025-11-21 04:39:34,831 | INFO     | sum of deviations: 32394902705567.24
[2025-11-20 23:40:26] 2025-11-21 04:39:34,832 | INFO     | mean x: 1763614550.8313599
[2025-11-20 23:40:26] 2025-11-21 04:39:34,832 | INFO     | mean y: 3006518.1173304627
[2025-11-20 23:40:26] 2025-11-21 04:39:34,832 | INFO     | intersect: -8509713831.425201
[2025-11-20 23:40:26] 2025-11-21 04:39:34,836 | INFO     | chi2: 18.596753174966672
[2025-11-20 23:40:26] 2025-11-21 04:39:34,836 | INFO     | current memory leak: 4.83 B/s (using 2787 data points, chi2=18.60)
[2025-11-20 23:40:26] 2025-11-21 04:39:34,838 | INFO     | could have reported an average CPU frequency of 2899 MHz (39 samples)
[2025-11-20 23:40:26] 2025-11-21 04:39:34,839 | INFO     | ..............................
[2025-11-20 23:40:26] 2025-11-21 04:39:34,839 | INFO     | . Timing measurements:
[2025-11-20 23:40:26] 2025-11-21 04:39:34,839 | INFO     | . get job = 3 s
[2025-11-20 23:40:26] 2025-11-21 04:39:34,839 | INFO     | . initial setup = 10 s
[2025-11-20 23:40:26] 2025-11-21 04:39:34,839 | INFO     | . payload setup = 64 s
[2025-11-20 23:40:26] 2025-11-21 04:39:34,839 | INFO     | . stage-in = 0 s
[2025-11-20 23:40:26] 2025-11-21 04:39:34,840 | INFO     | . payload execution = 171030 s
[2025-11-20 23:40:26] 2025-11-21 04:39:34,840 | INFO     | . stage-out = 4 s
[2025-11-20 23:40:26] 2025-11-21 04:39:34,840 | INFO     | . log creation = 1 s
[2025-11-20 23:40:26] 2025-11-21 04:39:34,840 | INFO     | ..............................
[2025-11-20 23:40:26] 2025-11-21 04:39:35,039 | INFO     | time since job start (171221s) is within the limit (172800.0s)
[2025-11-20 23:40:26] 2025-11-21 04:39:35,076 | INFO     | 
[2025-11-20 23:40:26] 2025-11-21 04:39:35,076 | INFO     | job summary report
[2025-11-20 23:40:26] 2025-11-21 04:39:35,076 | INFO     | --------------------------------------------------
[2025-11-20 23:40:26] 2025-11-21 04:39:35,076 | INFO     | PanDA job id: 6891575206
[2025-11-20 23:40:26] 2025-11-21 04:39:35,077 | INFO     | task id: 47493068
[2025-11-20 23:40:26] 2025-11-21 04:39:35,077 | INFO     | errors: (none)
[2025-11-20 23:40:26] 2025-11-21 04:39:35,077 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:40:26] 2025-11-21 04:39:35,077 | INFO     | pilot state: finished 
[2025-11-20 23:40:26] 2025-11-21 04:39:35,077 | INFO     | transexitcode: 0
[2025-11-20 23:40:26] 2025-11-21 04:39:35,077 | INFO     | exeerrorcode: 0
[2025-11-20 23:40:26] 2025-11-21 04:39:35,077 | INFO     | exeerrordiag: 
[2025-11-20 23:40:26] 2025-11-21 04:39:35,078 | INFO     | exitcode: 0
[2025-11-20 23:40:26] 2025-11-21 04:39:35,078 | INFO     | exitmsg: OK
[2025-11-20 23:40:26] 2025-11-21 04:39:35,078 | INFO     | cpuconsumptiontime: 498580 s
[2025-11-20 23:40:26] 2025-11-21 04:39:35,078 | INFO     | nevents: 1000
[2025-11-20 23:40:26] 2025-11-21 04:39:35,078 | INFO     | neventsw: 0
[2025-11-20 23:40:26] 2025-11-21 04:39:35,078 | INFO     | pid: 4136864
[2025-11-20 23:40:26] 2025-11-21 04:39:35,078 | INFO     | pgrp: 4136864
[2025-11-20 23:40:26] 2025-11-21 04:39:35,079 | INFO     | corecount: 9
[2025-11-20 23:40:26] 2025-11-21 04:39:35,079 | INFO     | event service: False
[2025-11-20 23:40:26] 2025-11-21 04:39:35,079 | INFO     | sizes: {0: 2296973, 1: 2297057, 2: 2297256, 3: 2297284, 14: 2297284, 25: 2297312, 36: 2297468, 46: 2297758, 48: 2297786, 171100: 2350628, 171101: 2350627, 171106: 
[2025-11-20 23:40:26] 2025-11-21 04:39:35,079 | INFO     | --------------------------------------------------
[2025-11-20 23:40:26] 2025-11-21 04:39:35,079 | INFO     | 
[2025-11-20 23:40:26] 2025-11-21 04:39:35,079 | INFO     | executing command: ls -lF /tmp/boinchome/slots/3
[2025-11-20 23:40:26] 2025-11-21 04:39:35,141 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,142 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,142 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,142 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,142 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,142 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,143 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,143 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,143 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,146 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,146 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,146 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,146 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,146 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,146 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,147 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,147 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,147 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:40:26] 2025-11-21 04:39:35,147 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,150 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:40:26] 2025-11-21 04:39:35,151 | INFO     | job 6891575206 has completed (purged errors)
[2025-11-20 23:40:26] 2025-11-21 04:39:35,151 | INFO     | overall cleanup function is called
[2025-11-20 23:40:26] 2025-11-21 04:39:36,172 | INFO     | --- collectZombieJob: --- 10, [4136864]
[2025-11-20 23:40:26] 2025-11-21 04:39:36,172 | INFO     | zombie collector waiting for pid 4136864
[2025-11-20 23:40:26] 2025-11-21 04:39:36,176 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:40:26] 2025-11-21 04:39:36,176 | INFO     | collected zombie processes
[2025-11-20 23:40:26] 2025-11-21 04:39:36,177 | INFO     | will attempt to kill all subprocesses of pid=4136864
[2025-11-20 23:40:26] 2025-11-21 04:39:36,540 | INFO     | process IDs to be killed: [4136864] (in reverse order)
[2025-11-20 23:40:26] 2025-11-21 04:39:36,643 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:40:26] 2025-11-21 04:39:36,643 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:40:26] 2025-11-21 04:39:36,654 | INFO     | did not find any defunct processes belonging to 4136864
[2025-11-20 23:40:26] 2025-11-21 04:39:36,667 | INFO     | did not find any defunct processes belonging to 4136864
[2025-11-20 23:40:26] 2025-11-21 04:39:36,669 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:40:26] 2025-11-21 04:39:36,669 | INFO     | ready for new job
[2025-11-20 23:40:26] 2025-11-21 04:39:36,669 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:40:26] 2025-11-21 04:39:36,677 | INFO     | ***************************************
[2025-11-20 23:40:26] 2025-11-21 04:39:36,677 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:40:26] 2025-11-21 04:39:36,677 | INFO     | ***************************************
[2025-11-20 23:40:26] 2025-11-21 04:39:36,677 | INFO     | 
[2025-11-20 23:40:26] 2025-11-21 04:39:36,679 | INFO     | architecture information:
[2025-11-20 23:40:26] 2025-11-21 04:39:36,680 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:40:26] 2025-11-21 04:39:36,718 | INFO     | cat /etc/os-release:
[2025-11-20 23:40:26] NAME="CentOS Linux"
[2025-11-20 23:40:26] VERSION="7 (Core)"
[2025-11-20 23:40:26] ID="centos"
[2025-11-20 23:40:26] ID_LIKE="rhel fedora"
[2025-11-20 23:40:26] VERSION_ID="7"
[2025-11-20 23:40:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:40:26] ANSI_COLOR="0;31"
[2025-11-20 23:40:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:40:26] HOME_URL="https://www.centos.org/"
[2025-11-20 23:40:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:40:26] 
[2025-11-20 23:40:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:40:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:40:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:40:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:40:26] 
[2025-11-20 23:40:26] 2025-11-21 04:39:36,718 | INFO     | ***************************************
[2025-11-20 23:40:26] 2025-11-21 04:39:37,222 | INFO     | executing command: df -mP /tmp/boinchome/slots/3
[2025-11-20 23:40:26] 2025-11-21 04:39:37,258 | INFO     | sufficient remaining disk space (48897196032 B)
[2025-11-20 23:40:26] 2025-11-21 04:39:37,258 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:40:26] 2025-11-21 04:39:37,258 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:40:26] 2025-11-21 04:39:37,258 | INFO     | update_server=False
[2025-11-20 23:40:26] 2025-11-21 04:39:37,258 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:40:26] 2025-11-21 04:39:37,488 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-20 23:40:26] 2025-11-21 04:39:37,489 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-20 23:40:26] 2025-11-21 04:39:37,489 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:40:26] 2025-11-21 04:39:37,489 | INFO     | will abort loop
[2025-11-20 23:40:26] 2025-11-21 04:39:37,598 | INFO     | all job control threads have been joined
[2025-11-20 23:40:26] 2025-11-21 04:39:37,613 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:40:26] 2025-11-21 04:39:37,938 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:40:26] 2025-11-21 04:39:38,000 | INFO     | all data control threads have been joined
[2025-11-20 23:40:26] 2025-11-21 04:39:38,265 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:38,495 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:38,605 | INFO     | [job] control thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:38,631 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:38,648 | INFO     | all payload control threads have been joined
[2025-11-20 23:40:26] 2025-11-21 04:39:38,874 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:38,894 | INFO     | [job] validate thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:38,933 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:39,006 | INFO     | [data] control thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:39,100 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:39,108 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:39,435 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:39,625 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:39,654 | INFO     | [payload] control thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:39,844 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:40,089 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:40:26] 2025-11-21 04:39:41,095 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:39:41,946 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:40:26] 2025-11-21 04:40:08,542 | INFO     | PID=4126471 has CPU usage=4.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 23:40:26] 2025-11-21 04:40:08,542 | INFO     | .. there are 9 such processes running
[2025-11-20 23:40:26] 2025-11-21 04:40:08,543 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:40:26] 2025-11-21 04:40:08,544 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:40:26] 2025-11-21 04:40:08,544 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:40:26] 2025-11-21 04:40:19,648 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:40:26] 2025-11-21 04:40:20,811 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140201744271168)>', '<ExcThread(monitor, started 140201372391168)>']
[2025-11-20 23:40:26] 2025-11-21 04:40:21,628 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:40:26] 2025-11-21 04:40:21,628 | INFO     | [monitor] control thread has ended
[2025-11-20 23:40:26] 2025-11-21 04:40:25,837 | INFO     | all workflow threads have been joined
[2025-11-20 23:40:26] 2025-11-21 04:40:25,837 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:40:26] 2025-11-21 04:40:25,837 | INFO     | traces error code: 0
[2025-11-20 23:40:26] 2025-11-21 04:40:25,838 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:40:26] 2025-11-21 04:40:25,978 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:40:26] 2025-11-21 04:40:25,981 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:40:26] 2025-11-21 04:40:25,984 [wrapper] pilotpid: 4126471
[2025-11-20 23:40:26] 2025-11-21 04:40:25,987 [wrapper] Pilot exit status: 0
[2025-11-20 23:40:26] 2025-11-21 04:40:26,024 [wrapper] pandaids: 6891575206
[2025-11-20 23:40:26] 2025-11-21 04:40:26,108 [wrapper] cleanup supervisor_pilot 3803770 4126472
[2025-11-20 23:40:26] 2025-11-21 04:40:26,112 [wrapper] Test setup, not cleaning
[2025-11-20 23:40:26] 2025-11-21 04:40:26,115 [wrapper] apfmon messages muted
[2025-11-20 23:40:26] 2025-11-21 04:40:26,120 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:40:26] 2025-11-21 04:40:26,123 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:40:26]  *** Error codes and diagnostics ***
[2025-11-20 23:40:26]     "exeErrorCode": 0,
[2025-11-20 23:40:26]     "exeErrorDiag": "",
[2025-11-20 23:40:26]     "pilotErrorCode": 0,
[2025-11-20 23:40:26]     "pilotErrorDiag": "",
[2025-11-20 23:40:26]  *** Listing of results directory ***
[2025-11-20 23:40:26] total 1328300
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 11:24 pilot3.tar.gz
[2025-11-20 23:40:26] -rwx------. 1 boincer umatlas     36292 Nov 18 11:30 runpilot2-wrapper.sh
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:30 queuedata.json
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:40:26] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:03 run_atlas
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:03 job.xml
[2025-11-20 23:40:26] -rw-r--r--. 2 boincer umatlas 406815744 Nov 19 00:03 EVNT.47493065._000359.pool.root.1
[2025-11-20 23:40:26] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:03 start_atlas.sh
[2025-11-20 23:40:26] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:03 shared
[2025-11-20 23:40:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 19 00:03 input.tar.gz
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:03 boinc_lockfile
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 00:04 pandaJob.out
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas    992806 Nov 19 00:05 agis_schedconf.cvmfs.json
[2025-11-20 23:40:26] drwx------. 5 boincer umatlas      4096 Nov 19 00:05 pilot3
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas       533 Nov 20 23:17 boinc_task_state.xml
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas 916027815 Nov 20 23:38 HITS.47493068._003590.pool.root.1
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas      6525 Nov 20 23:38 init_data.xml
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas      1055 Nov 20 23:39 memory_monitor_summary.json
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas   1526164 Nov 20 23:39 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas   2891259 Nov 20 23:39 log.47493068._003590.job.log.tgz.1
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas      8637 Nov 20 23:39 heartbeat.json
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas        95 Nov 20 23:40 pilot_heartbeat.json
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas        29 Nov 20 23:40 wrapper_checkpoint.txt
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 23:40 boinc_mmap_file
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas      5009 Nov 20 23:40 pilotlog.txt
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas  13814923 Nov 20 23:40 log.47493068._003590.job.log.1
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas       353 Nov 20 23:40 output.list
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas       620 Nov 20 23:40 runtime_log
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas  16721920 Nov 20 23:40 result.tar.gz
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas       664 Nov 20 23:40 S1JMDmimdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbpFKDmImHnsm.diag
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas      8705 Nov 20 23:40 runtime_log.err
[2025-11-20 23:40:26] -rw-r--r--. 1 boincer umatlas     21781 Nov 20 23:40 stderr.txt
[2025-11-20 23:40:26] HITS file was successfully produced:
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas 916027815 Nov 20 23:38 shared/HITS.pool.root.1
[2025-11-20 23:40:26]  *** Contents of shared directory: ***
[2025-11-20 23:40:26] total 1308780
[2025-11-20 23:40:26] -rw-r--r--. 2 boincer umatlas 406815744 Nov 19 00:03 ATLAS.root_0
[2025-11-20 23:40:26] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:03 start_atlas.sh
[2025-11-20 23:40:26] -rw-r--r--. 2 boincer umatlas    590100 Nov 19 00:03 input.tar.gz
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas 916027815 Nov 20 23:38 HITS.pool.root.1
[2025-11-20 23:40:26] -rw-------. 1 boincer umatlas  16721920 Nov 20 23:40 result.tar.gz
23:40:27 (4120366): run_atlas exited; CPU time 498967.252041
23:40:27 (4120366): called boinc_finish(0)

</stderr_txt>
]]>

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