Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
15:01:20 (1225720): wrapper (7.7.26015): starting
15:01:20 (1225720): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 15:01:20] Arguments: --nthreads 8
[2025-11-19 15:01:20] Threads: 8
[2025-11-19 15:01:20] Checking for CVMFS
[2025-11-19 15:01:21] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 15:01:21] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 15:01:21] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 15:01:23] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 15:01:23] 2.13.2.0 6099 24775 224176 153055 0 102 40766158 40960000 13265 16776704 0 20849609 99.719 13990981 32082 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 15:01:23] CVMFS is ok
[2025-11-19 15:01:23] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 15:01:23] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 15:01:23] Further information can be found at the LHC@home message board.
[2025-11-19 15:01:23] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 15:01:23] Checking for apptainer binary...
[2025-11-19 15:01:23] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 15:01:23] Running /usr/bin/apptainer --version
[2025-11-19 15:01:23] apptainer version 1.4.4-1.el9
[2025-11-19 15:01:23] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 15:01:23] c-210-31-2.aglt2.org
[2025-11-19 15:01:23] apptainer works
[2025-11-19 15:01:23] Set ATHENA_PROC_NUMBER=8
[2025-11-19 15:01:23] Set ATHENA_CORE_NUMBER=8
[2025-11-19 15:01:24] Starting ATLAS job with PandaID=6891564438
[2025-11-19 15:01:24] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 07:10:29]  *** The last 200 lines of the pilot log: ***
[2025-11-20 07:10:29] 2025-11-20 12:09:42,255 | INFO     | time since job start (58020s) is within the limit (172800.0s)
[2025-11-20 07:10:29] 2025-11-20 12:09:42,709 | INFO     | monitor loop #3806: job 0:6891564438 is in state 'finished'
[2025-11-20 07:10:29] 2025-11-20 12:09:42,709 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:10:29] 2025-11-20 12:09:44,223 | INFO     | PID=1229542 has CPU usage=8.2% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 07:10:29] 2025-11-20 12:09:44,224 | INFO     | .. there are 10 such processes running
[2025-11-20 07:10:29] 2025-11-20 12:09:45,225 | INFO     | time since job start (58023s) is within the limit (172800.0s)
[2025-11-20 07:10:29] 2025-11-20 12:09:45,225 | INFO     | 58033s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 07:10:29] 2025-11-20 12:09:45,233 | INFO     | monitor loop #3807: job 0:6891564438 is in state 'finished'
[2025-11-20 07:10:29] 2025-11-20 12:09:45,233 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,241 | INFO     | time since job start (58025s) is within the limit (172800.0s)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,484 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 07:10:29] 2025-11-20 12:09:47,487 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2820.781892857143
[2025-11-20 07:10:29] 2025-11-20 12:09:47,500 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891564438/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,501 | INFO     | extracted standard info from prmon json
[2025-11-20 07:10:29] 2025-11-20 12:09:47,501 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 07:10:29] 2025-11-20 12:09:47,501 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 07:10:29] 2025-11-20 12:09:47,516 | INFO     | fitting pss+swap vs Time
[2025-11-20 07:10:29] 2025-11-20 12:09:47,518 | INFO     | sum of square deviations: 265020789288.3248
[2025-11-20 07:10:29] 2025-11-20 12:09:47,606 | INFO     | sum of deviations: 2760922037848.352
[2025-11-20 07:10:29] 2025-11-20 12:09:47,606 | INFO     | mean x: 1763611619.3445733
[2025-11-20 07:10:29] 2025-11-20 12:09:47,606 | INFO     | mean y: 2890529.904109589
[2025-11-20 07:10:29] 2025-11-20 12:09:47,607 | INFO     | intersect: -18369985798.512886
[2025-11-20 07:10:29] 2025-11-20 12:09:47,608 | INFO     | chi2: 15.377049473133926
[2025-11-20 07:10:29] 2025-11-20 12:09:47,609 | INFO     | sum of square deviations: 260854580455.6937
[2025-11-20 07:10:29] 2025-11-20 12:09:47,626 | INFO     | sum of deviations: 3074240258822.0625
[2025-11-20 07:10:29] 2025-11-20 12:09:47,626 | INFO     | mean x: 1763611466.8569915
[2025-11-20 07:10:29] 2025-11-20 12:09:47,626 | INFO     | mean y: 2901994.415254237
[2025-11-20 07:10:29] 2025-11-20 12:09:47,626 | INFO     | intersect: -20781725834.854877
[2025-11-20 07:10:29] 2025-11-20 12:09:47,628 | INFO     | chi2: 12.209266170889062
[2025-11-20 07:10:29] 2025-11-20 12:09:47,628 | INFO     | current chi2=12.209266170889062 (change=20.600722575416494 %)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,628 | INFO     | right removable region: 943
[2025-11-20 07:10:29] 2025-11-20 12:09:47,629 | INFO     | sum of square deviations: 260853223205.69363
[2025-11-20 07:10:29] 2025-11-20 12:09:47,646 | INFO     | sum of deviations: 2385612885029.59
[2025-11-20 07:10:29] 2025-11-20 12:09:47,646 | INFO     | mean x: 1763611771.8569915
[2025-11-20 07:10:29] 2025-11-20 12:09:47,646 | INFO     | mean y: 2904261.1302966103
[2025-11-20 07:10:29] 2025-11-20 12:09:47,646 | INFO     | intersect: -16126070169.115778
[2025-11-20 07:10:29] 2025-11-20 12:09:47,647 | INFO     | chi2: 11.403350141912634
[2025-11-20 07:10:29] 2025-11-20 12:09:47,648 | INFO     | current chi2=11.403350141912634 (change=25.84175422056069 %)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,649 | INFO     | sum of square deviations: 256729564922.76886
[2025-11-20 07:10:29] 2025-11-20 12:09:47,665 | INFO     | sum of deviations: 2082656614862.395
[2025-11-20 07:10:29] 2025-11-20 12:09:47,665 | INFO     | mean x: 1763611924.3695421
[2025-11-20 07:10:29] 2025-11-20 12:09:47,665 | INFO     | mean y: 2915465.027689031
[2025-11-20 07:10:29] 2025-11-20 12:09:47,665 | INFO     | intersect: -14303960493.895708
[2025-11-20 07:10:29] 2025-11-20 12:09:47,667 | INFO     | chi2: 9.005556936749489
[2025-11-20 07:10:29] 2025-11-20 12:09:47,667 | INFO     | current chi2=9.005556936749489 (change=21.027094453147903 %)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,667 | INFO     | left removable region: 20
[2025-11-20 07:10:29] 2025-11-20 12:09:47,668 | INFO     | sum of square deviations: 243828178680.26428
[2025-11-20 07:10:29] 2025-11-20 12:09:47,684 | INFO     | sum of deviations: 2186965889076.3494
[2025-11-20 07:10:29] 2025-11-20 12:09:47,684 | INFO     | mean x: 1763612046.404117
[2025-11-20 07:10:29] 2025-11-20 12:09:47,684 | INFO     | mean y: 2940192.066088841
[2025-11-20 07:10:29] 2025-11-20 12:09:47,684 | INFO     | intersect: -15815409466.804272
[2025-11-20 07:10:29] 2025-11-20 12:09:47,685 | INFO     | chi2: 4.0411998825438395
[2025-11-20 07:10:29] 2025-11-20 12:09:47,686 | INFO     | current memory leak: 8.97 B/s (using 923 data points, chi2=4.04)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,687 | INFO     | could have reported an average CPU frequency of 2696 MHz (35 samples)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,687 | INFO     | ..............................
[2025-11-20 07:10:29] 2025-11-20 12:09:47,687 | INFO     | . Timing measurements:
[2025-11-20 07:10:29] 2025-11-20 12:09:47,687 | INFO     | . get job = 0 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,687 | INFO     | . initial setup = 10 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,687 | INFO     | . payload setup = 42 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,687 | INFO     | . stage-in = 0 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,688 | INFO     | . payload execution = 57887 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,688 | INFO     | . stage-out = 6 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,688 | INFO     | . log creation = 1 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,688 | INFO     | ..............................
[2025-11-20 07:10:29] 2025-11-20 12:09:47,818 | INFO     | 
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | job summary report
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | --------------------------------------------------
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | PanDA job id: 6891564438
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | task id: 47493068
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | errors: (none)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | pilot state: finished 
[2025-11-20 07:10:29] 2025-11-20 12:09:47,819 | INFO     | transexitcode: 0
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | exeerrorcode: 0
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | exeerrordiag: 
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | exitcode: 0
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | exitmsg: OK
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | cpuconsumptiontime: 251152 s
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | nevents: 1000
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | neventsw: 0
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | pid: 1237478
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | pgrp: 1237478
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | corecount: 8
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | event service: False
[2025-11-20 07:10:29] 2025-11-20 12:09:47,820 | INFO     | sizes: {0: 2297029, 1: 2297029, 2: 2297256, 4: 2297256, 15: 2297284, 26: 2297312, 30: 2297730, 37: 2297758, 57931: 2349834, 57939: 2358828, 57942: 2358884, 57963: 
[2025-11-20 07:10:29] 2025-11-20 12:09:47,821 | INFO     | --------------------------------------------------
[2025-11-20 07:10:29] 2025-11-20 12:09:47,821 | INFO     | 
[2025-11-20 07:10:29] 2025-11-20 12:09:47,821 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-20 07:10:29] 2025-11-20 12:09:47,926 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,927 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,928 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 07:10:29] 2025-11-20 12:09:47,929 | INFO     | job 6891564438 has completed (purged errors)
[2025-11-20 07:10:29] 2025-11-20 12:09:47,929 | INFO     | overall cleanup function is called
[2025-11-20 07:10:29] 2025-11-20 12:09:48,966 | INFO     | --- collectZombieJob: --- 10, [1237478]
[2025-11-20 07:10:29] 2025-11-20 12:09:48,967 | INFO     | zombie collector waiting for pid 1237478
[2025-11-20 07:10:29] 2025-11-20 12:09:48,967 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 07:10:29] 2025-11-20 12:09:48,967 | INFO     | collected zombie processes
[2025-11-20 07:10:29] 2025-11-20 12:09:48,967 | INFO     | will attempt to kill all subprocesses of pid=1237478
[2025-11-20 07:10:29] 2025-11-20 12:09:49,672 | INFO     | process IDs to be killed: [1237478] (in reverse order)
[2025-11-20 07:10:29] 2025-11-20 12:09:49,901 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 07:10:29] 2025-11-20 12:09:49,901 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 07:10:29] 2025-11-20 12:09:49,941 | INFO     | did not find any defunct processes belonging to 1237478
[2025-11-20 07:10:29] 2025-11-20 12:09:49,964 | INFO     | did not find any defunct processes belonging to 1237478
[2025-11-20 07:10:29] 2025-11-20 12:09:49,970 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 07:10:29] 2025-11-20 12:09:49,970 | INFO     | ready for new job
[2025-11-20 07:10:29] 2025-11-20 12:09:49,970 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 07:10:29] 2025-11-20 12:09:50,007 | INFO     | ***************************************
[2025-11-20 07:10:29] 2025-11-20 12:09:50,008 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 07:10:29] 2025-11-20 12:09:50,008 | INFO     | ***************************************
[2025-11-20 07:10:29] 2025-11-20 12:09:50,008 | INFO     | 
[2025-11-20 07:10:29] 2025-11-20 12:09:50,015 | INFO     | architecture information:
[2025-11-20 07:10:29] 2025-11-20 12:09:50,016 | INFO     | executing command: cat /etc/os-release
[2025-11-20 07:10:29] 2025-11-20 12:09:50,036 | INFO     | cat /etc/os-release:
[2025-11-20 07:10:29] NAME="CentOS Linux"
[2025-11-20 07:10:29] VERSION="7 (Core)"
[2025-11-20 07:10:29] ID="centos"
[2025-11-20 07:10:29] ID_LIKE="rhel fedora"
[2025-11-20 07:10:29] VERSION_ID="7"
[2025-11-20 07:10:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 07:10:29] ANSI_COLOR="0;31"
[2025-11-20 07:10:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 07:10:29] HOME_URL="https://www.centos.org/"
[2025-11-20 07:10:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 07:10:29] 
[2025-11-20 07:10:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 07:10:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 07:10:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 07:10:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 07:10:29] 
[2025-11-20 07:10:29] 2025-11-20 12:09:50,036 | INFO     | ***************************************
[2025-11-20 07:10:29] 2025-11-20 12:09:50,540 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-20 07:10:29] 2025-11-20 12:09:50,613 | INFO     | sufficient remaining disk space (71705821184 B)
[2025-11-20 07:10:29] 2025-11-20 12:09:50,614 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 07:10:29] 2025-11-20 12:09:50,614 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 07:10:29] 2025-11-20 12:09:50,614 | INFO     | update_server=False
[2025-11-20 07:10:29] 2025-11-20 12:09:50,614 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 07:10:29] 2025-11-20 12:09:50,616 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 07:10:29] 2025-11-20 12:09:50,782 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 07:10:29] 2025-11-20 12:09:51,057 | INFO     | all data control threads have been joined
[2025-11-20 07:10:29] 2025-11-20 12:09:51,159 | INFO     | all job control threads have been joined
[2025-11-20 07:10:29] 2025-11-20 12:09:51,264 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:10:29] 2025-11-20 12:09:51,264 | INFO     | aborting loop
[2025-11-20 07:10:29] 2025-11-20 12:09:51,620 | INFO     | [job] retrieve thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:51,630 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:51,633 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:51,730 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,006 | INFO     | [job] validate thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,009 | INFO     | [data] copytool_in thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,013 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,062 | INFO     | all payload control threads have been joined
[2025-11-20 07:10:29] 2025-11-20 12:09:52,064 | INFO     | [data] control thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,167 | INFO     | [job] control thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,271 | INFO     | [job] job monitor thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,623 | INFO     | [data] copytool_out thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:52,835 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 07:10:29] 2025-11-20 12:09:52,957 | INFO     | [payload] validate_post thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:53,069 | INFO     | [payload] control thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:53,167 | INFO     | [payload] failed_post thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:53,842 | INFO     | [job] queue monitor thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:09:54,794 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 07:10:29] 2025-11-20 12:10:20,746 | INFO     | PID=1229542 has CPU usage=2.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 07:10:29] 2025-11-20 12:10:20,747 | INFO     | .. there are 10 such processes running
[2025-11-20 07:10:29] 2025-11-20 12:10:20,747 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 07:10:29] 2025-11-20 12:10:20,747 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 07:10:29] 2025-11-20 12:10:20,747 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 07:10:29] 2025-11-20 12:10:22,523 | INFO     | [monitor] cgroup control has ended
[2025-11-20 07:10:29] 2025-11-20 12:10:23,073 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140124225406784)>', '<ExcThread(monitor, started 140123417069312)>']
[2025-11-20 07:10:29] 2025-11-20 12:10:23,763 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 07:10:29] 2025-11-20 12:10:23,764 | INFO     | [monitor] control thread has ended
[2025-11-20 07:10:29] 2025-11-20 12:10:28,098 | INFO     | all workflow threads have been joined
[2025-11-20 07:10:29] 2025-11-20 12:10:28,099 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 07:10:29] 2025-11-20 12:10:28,100 | INFO     | traces error code: 0
[2025-11-20 07:10:29] 2025-11-20 12:10:28,100 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 07:10:29] 2025-11-20 12:10:28,334 [wrapper] ==== pilot stdout END ====
[2025-11-20 07:10:29] 2025-11-20 12:10:28,337 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 07:10:29] 2025-11-20 12:10:28,340 [wrapper] pilotpid: 1229542
[2025-11-20 07:10:29] 2025-11-20 12:10:28,342 [wrapper] Pilot exit status: 0
[2025-11-20 07:10:29] 2025-11-20 12:10:28,370 [wrapper] pandaids: 6891564438
[2025-11-20 07:10:29] 2025-11-20 12:10:28,470 [wrapper] cleanup supervisor_pilot 2569090 1229543
[2025-11-20 07:10:29] 2025-11-20 12:10:28,483 [wrapper] Test setup, not cleaning
[2025-11-20 07:10:29] 2025-11-20 12:10:28,486 [wrapper] apfmon messages muted
[2025-11-20 07:10:29] 2025-11-20 12:10:28,498 [wrapper] ==== wrapper stdout END ====
[2025-11-20 07:10:29] 2025-11-20 12:10:28,538 [wrapper] ==== wrapper stderr END ====
[2025-11-20 07:10:29]  *** Error codes and diagnostics ***
[2025-11-20 07:10:29]     "exeErrorCode": 0,
[2025-11-20 07:10:29]     "exeErrorDiag": "",
[2025-11-20 07:10:29]     "pilotErrorCode": 0,
[2025-11-20 07:10:29]     "pilotErrorDiag": "",
[2025-11-20 07:10:29]  *** Listing of results directory ***
[2025-11-20 07:10:29] total 1311968
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:27 queuedata.json
[2025-11-20 07:10:29] -rwx------. 1 boincer umatlas     36292 Nov 18 10:27 runpilot2-wrapper.sh
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas       100 Nov 19 15:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 07:10:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 15:01 run_atlas
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas       105 Nov 19 15:01 job.xml
[2025-11-20 07:10:29] -rw-r--r--. 2 boincer umatlas 411865816 Nov 19 15:01 EVNT.47493065._000118.pool.root.1
[2025-11-20 07:10:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 15:01 start_atlas.sh
[2025-11-20 07:10:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 15:01 shared
[2025-11-20 07:10:29] -rw-r--r--. 2 boincer umatlas    590102 Nov 19 15:01 input.tar.gz
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas         0 Nov 19 15:01 boinc_lockfile
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 15:01 pandaJob.out
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas    989451 Nov 19 15:02 agis_schedconf.cvmfs.json
[2025-11-20 07:10:29] drwx------. 5 boincer umatlas      4096 Nov 19 15:02 pilot3
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas       533 Nov 20 06:46 boinc_task_state.xml
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas 907937497 Nov 20 07:08 HITS.47493068._001180.pool.root.1
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas      1057 Nov 20 07:09 memory_monitor_summary.json
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas   1525063 Nov 20 07:09 agis_ddmendpoints.agis.ALL.json
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas   2154302 Nov 20 07:09 log.47493068._001180.job.log.tgz.1
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas      8637 Nov 20 07:09 heartbeat.json
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas        95 Nov 20 07:09 pilot_heartbeat.json
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas      6842 Nov 20 07:10 init_data.xml
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas        29 Nov 20 07:10 wrapper_checkpoint.txt
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 07:10 boinc_mmap_file
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas      4824 Nov 20 07:10 pilotlog.txt
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas   7710614 Nov 20 07:10 log.47493068._001180.job.log.1
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas       353 Nov 20 07:10 output.list
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas       620 Nov 20 07:10 runtime_log
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas   9881600 Nov 20 07:10 result.tar.gz
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas      8714 Nov 20 07:10 runtime_log.err
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas       662 Nov 20 07:10 rfMNDmYncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmiDFKDmHXuJMo.diag
[2025-11-20 07:10:29] -rw-r--r--. 1 boincer umatlas     21685 Nov 20 07:10 stderr.txt
[2025-11-20 07:10:29] HITS file was successfully produced:
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas 907937497 Nov 20 07:08 shared/HITS.pool.root.1
[2025-11-20 07:10:29]  *** Contents of shared directory: ***
[2025-11-20 07:10:29] total 1299132
[2025-11-20 07:10:29] -rw-r--r--. 2 boincer umatlas 411865816 Nov 19 15:01 ATLAS.root_0
[2025-11-20 07:10:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 15:01 start_atlas.sh
[2025-11-20 07:10:29] -rw-r--r--. 2 boincer umatlas    590102 Nov 19 15:01 input.tar.gz
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas 907937497 Nov 20 07:08 HITS.pool.root.1
[2025-11-20 07:10:29] -rw-------. 1 boincer umatlas   9881600 Nov 20 07:10 result.tar.gz
07:10:30 (1225720): run_atlas exited; CPU time 251460.539168
07:10:30 (1225720): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN