Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
19:06:13 (3850837): wrapper (7.7.26015): starting
19:06:13 (3850837): wrapper: running run_atlas (--nthreads 9)
[2025-11-19 19:06:13] Arguments: --nthreads 9
[2025-11-19 19:06:13] Threads: 9
[2025-11-19 19:06:13] Checking for CVMFS
[2025-11-19 19:06:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 19:06:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 19:06:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 19:06:13] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 19:06:13] 2.13.3.0 9239 20621 334096 153062 1 286 27806590 32935937 15447 16776704 0 75170130 99.466 96429037 38410 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-19 19:06:13] CVMFS is ok
[2025-11-19 19:06:13] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 19:06:13] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 19:06:13] Further information can be found at the LHC@home message board.
[2025-11-19 19:06:13] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 19:06:13] Checking for apptainer binary...
[2025-11-19 19:06:13] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 19:06:13] Running /usr/bin/apptainer --version
[2025-11-19 19:06:13] apptainer version 1.4.4-1.el9
[2025-11-19 19:06:13] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 19:06:14] c6-6-39-3.aglt2.org
[2025-11-19 19:06:14] apptainer works
[2025-11-19 19:06:14] Set ATHENA_PROC_NUMBER=9
[2025-11-19 19:06:14] Set ATHENA_CORE_NUMBER=9
[2025-11-19 19:06:14] Starting ATLAS job with PandaID=6891594330
[2025-11-19 19:06:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:53:57]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:53:57] 2025-11-20 19:53:22,580 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 14:53:57] 2025-11-20 19:53:22,985 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 14:53:57] 2025-11-20 19:53:23,001 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2765.2274821428573
[2025-11-20 14:53:57] 2025-11-20 19:53:23,015 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891594330/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,016 | INFO     | extracted standard info from prmon json
[2025-11-20 14:53:57] 2025-11-20 19:53:23,016 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 14:53:57] 2025-11-20 19:53:23,016 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 14:53:57] 2025-11-20 19:53:23,041 | INFO     | fitting pss+swap vs Time
[2025-11-20 14:53:57] 2025-11-20 19:53:23,044 | INFO     | sum of square deviations: 492854103373.18896
[2025-11-20 14:53:57] 2025-11-20 19:53:23,077 | INFO     | sum of deviations: 3256666530717.532
[2025-11-20 14:53:57] 2025-11-20 19:53:23,078 | INFO     | mean x: 1763632782.4250214
[2025-11-20 14:53:57] 2025-11-20 19:53:23,078 | INFO     | mean y: 3113646.7146529565
[2025-11-20 14:53:57] 2025-11-20 19:53:23,078 | INFO     | intersect: -11650566044.069574
[2025-11-20 14:53:57] 2025-11-20 19:53:23,080 | INFO     | chi2: 8.590459434011304
[2025-11-20 14:53:57] 2025-11-20 19:53:23,082 | INFO     | sum of square deviations: 486548294917.36395
[2025-11-20 14:53:57] 2025-11-20 19:53:23,115 | INFO     | sum of deviations: 3676467560777.1143
[2025-11-20 14:53:57] 2025-11-20 19:53:23,115 | INFO     | mean x: 1763632629.944062
[2025-11-20 14:53:57] 2025-11-20 19:53:23,115 | INFO     | mean y: 3123799.017211704
[2025-11-20 14:53:57] 2025-11-20 19:53:23,115 | INFO     | intersect: -13323278165.290594
[2025-11-20 14:53:57] 2025-11-20 19:53:23,117 | INFO     | chi2: 5.415372864256926
[2025-11-20 14:53:57] 2025-11-20 19:53:23,118 | INFO     | current chi2=5.415372864256926 (change=36.960614203980654 %)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,120 | INFO     | sum of square deviations: 480296250853.38184
[2025-11-20 14:53:57] 2025-11-20 19:53:23,156 | INFO     | sum of deviations: 4058189735787.345
[2025-11-20 14:53:57] 2025-11-20 19:53:23,156 | INFO     | mean x: 1763632477.4598098
[2025-11-20 14:53:57] 2025-11-20 19:53:23,156 | INFO     | mean y: 3133102.630942092
[2025-11-20 14:53:57] 2025-11-20 19:53:23,156 | INFO     | intersect: -14898409861.76218
[2025-11-20 14:53:57] 2025-11-20 19:53:23,158 | INFO     | chi2: 2.566715635961779
[2025-11-20 14:53:57] 2025-11-20 19:53:23,159 | INFO     | current chi2=2.566715635961779 (change=52.60315955521979 %)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,161 | INFO     | sum of square deviations: 474096821973.2422
[2025-11-20 14:53:57] 2025-11-20 19:53:23,196 | INFO     | sum of deviations: 4171765919709.145
[2025-11-20 14:53:57] 2025-11-20 19:53:23,196 | INFO     | mean x: 1763632324.9609375
[2025-11-20 14:53:57] 2025-11-20 19:53:23,197 | INFO     | mean y: 3135892.6258680555
[2025-11-20 14:53:57] 2025-11-20 19:53:23,197 | INFO     | intersect: -15515764228.971436
[2025-11-20 14:53:57] 2025-11-20 19:53:23,198 | INFO     | chi2: 2.125234986301688
[2025-11-20 14:53:57] 2025-11-20 19:53:23,198 | INFO     | current chi2=2.125234986301688 (change=17.200216629944784 %)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,198 | INFO     | right removable region: 1151
[2025-11-20 14:53:57] 2025-11-20 19:53:23,200 | INFO     | sum of square deviations: 486545286901.1354
[2025-11-20 14:53:57] 2025-11-20 19:53:23,238 | INFO     | sum of deviations: 2960731100841.6475
[2025-11-20 14:53:57] 2025-11-20 19:53:23,238 | INFO     | mean x: 1763632934.9423409
[2025-11-20 14:53:57] 2025-11-20 19:53:23,239 | INFO     | mean y: 3120791.1290877797
[2025-11-20 14:53:57] 2025-11-20 19:53:23,239 | INFO     | intersect: -10728959082.071793
[2025-11-20 14:53:57] 2025-11-20 19:53:23,240 | INFO     | chi2: 6.832872270282312
[2025-11-20 14:53:57] 2025-11-20 19:53:23,240 | INFO     | current chi2=6.832872270282312 (change=20.459757446387115 %)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,240 | INFO     | left removable region: 10
[2025-11-20 14:53:57] 2025-11-20 19:53:23,241 | INFO     | sum of square deviations: 460642990995.11346
[2025-11-20 14:53:57] 2025-11-20 19:53:23,278 | INFO     | sum of deviations: 3795813849842.2
[2025-11-20 14:53:57] 2025-11-20 19:53:23,278 | INFO     | mean x: 1763632599.4890447
[2025-11-20 14:53:57] 2025-11-20 19:53:23,278 | INFO     | mean y: 3145535.0157756354
[2025-11-20 14:53:57] 2025-11-20 19:53:23,278 | INFO     | intersect: -14529629690.136261
[2025-11-20 14:53:57] 2025-11-20 19:53:23,280 | INFO     | chi2: 0.2974198279216928
[2025-11-20 14:53:57] 2025-11-20 19:53:23,280 | INFO     | current memory leak: 8.24 B/s (using 1141 data points, chi2=0.30)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,281 | INFO     | could have reported an average CPU frequency of 2874 MHz (42 samples)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,281 | INFO     | ..............................
[2025-11-20 14:53:57] 2025-11-20 19:53:23,281 | INFO     | . Timing measurements:
[2025-11-20 14:53:57] 2025-11-20 19:53:23,281 | INFO     | . get job = 0 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,281 | INFO     | . initial setup = 2 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,281 | INFO     | . payload setup = 6 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,282 | INFO     | . stage-in = 0 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,282 | INFO     | . payload execution = 71173 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,282 | INFO     | . stage-out = 3 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,282 | INFO     | . log creation = 0 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,282 | INFO     | ..............................
[2025-11-20 14:53:57] 2025-11-20 19:53:23,872 | INFO     | 
[2025-11-20 14:53:57] 2025-11-20 19:53:23,872 | INFO     | job summary report
[2025-11-20 14:53:57] 2025-11-20 19:53:23,872 | INFO     | --------------------------------------------------
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | PanDA job id: 6891594330
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | task id: 47493068
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | errors: (none)
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | pilot state: finished 
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | transexitcode: 0
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | exeerrorcode: 0
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | exeerrordiag: 
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | exitcode: 0
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | exitmsg: OK
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | cpuconsumptiontime: 249019 s
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | nevents: 1000
[2025-11-20 14:53:57] 2025-11-20 19:53:23,873 | INFO     | neventsw: 0
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | pid: 3860854
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | pgrp: 3860854
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | corecount: 9
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | event service: False
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | sizes: {0: 2297029, 1: 2297228, 5: 2297490, 11: 2297546, 71183: 2355809, 71188: 2366399, 71191: 2366583, 71201: 2366829}
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | --------------------------------------------------
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | 
[2025-11-20 14:53:57] 2025-11-20 19:53:23,874 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-20 14:53:57] 2025-11-20 19:53:24,019 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,019 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,019 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,019 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,020 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 14:53:57] 2025-11-20 19:53:24,021 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,021 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 14:53:57] 2025-11-20 19:53:24,021 | INFO     | job 6891594330 has completed (purged errors)
[2025-11-20 14:53:57] 2025-11-20 19:53:24,021 | INFO     | overall cleanup function is called
[2025-11-20 14:53:57] 2025-11-20 19:53:24,147 | INFO     | PID=3854507 has CPU usage=16.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-20 14:53:57] 2025-11-20 19:53:24,147 | INFO     | .. there are 31 such processes running
[2025-11-20 14:53:57] 2025-11-20 19:53:25,084 | INFO     | --- collectZombieJob: --- 10, [3860854]
[2025-11-20 14:53:57] 2025-11-20 19:53:25,085 | INFO     | zombie collector waiting for pid 3860854
[2025-11-20 14:53:57] 2025-11-20 19:53:25,085 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 14:53:57] 2025-11-20 19:53:25,085 | INFO     | collected zombie processes
[2025-11-20 14:53:57] 2025-11-20 19:53:25,085 | INFO     | will attempt to kill all subprocesses of pid=3860854
[2025-11-20 14:53:57] 2025-11-20 19:53:25,402 | INFO     | process IDs to be killed: [3860854] (in reverse order)
[2025-11-20 14:53:57] 2025-11-20 19:53:25,559 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 14:53:57] 2025-11-20 19:53:25,559 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 14:53:57] 2025-11-20 19:53:25,575 | INFO     | did not find any defunct processes belonging to 3860854
[2025-11-20 14:53:57] 2025-11-20 19:53:25,601 | INFO     | did not find any defunct processes belonging to 3860854
[2025-11-20 14:53:57] 2025-11-20 19:53:25,602 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 14:53:57] 2025-11-20 19:53:25,603 | INFO     | ready for new job
[2025-11-20 14:53:57] 2025-11-20 19:53:25,603 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 14:53:57] 2025-11-20 19:53:25,608 | INFO     | ***************************************
[2025-11-20 14:53:57] 2025-11-20 19:53:25,608 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 14:53:57] 2025-11-20 19:53:25,608 | INFO     | ***************************************
[2025-11-20 14:53:57] 2025-11-20 19:53:25,608 | INFO     | 
[2025-11-20 14:53:57] 2025-11-20 19:53:25,611 | INFO     | architecture information:
[2025-11-20 14:53:57] 2025-11-20 19:53:25,612 | INFO     | executing command: cat /etc/os-release
[2025-11-20 14:53:57] 2025-11-20 19:53:25,631 | INFO     | cat /etc/os-release:
[2025-11-20 14:53:57] NAME="CentOS Linux"
[2025-11-20 14:53:57] VERSION="7 (Core)"
[2025-11-20 14:53:57] ID="centos"
[2025-11-20 14:53:57] ID_LIKE="rhel fedora"
[2025-11-20 14:53:57] VERSION_ID="7"
[2025-11-20 14:53:57] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:53:57] ANSI_COLOR="0;31"
[2025-11-20 14:53:57] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:53:57] HOME_URL="https://www.centos.org/"
[2025-11-20 14:53:57] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:53:57] 
[2025-11-20 14:53:57] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:53:57] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:53:57] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:53:57] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:53:57] 
[2025-11-20 14:53:57] 2025-11-20 19:53:25,631 | INFO     | ***************************************
[2025-11-20 14:53:57] 2025-11-20 19:53:26,137 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-20 14:53:57] 2025-11-20 19:53:26,163 | INFO     | sufficient remaining disk space (69836210176 B)
[2025-11-20 14:53:57] 2025-11-20 19:53:26,164 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:53:57] 2025-11-20 19:53:26,164 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:53:57] 2025-11-20 19:53:26,164 | INFO     | update_server=False
[2025-11-20 14:53:57] 2025-11-20 19:53:26,164 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:53:57] 2025-11-20 19:53:26,164 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:53:57] 2025-11-20 19:53:26,165 | INFO     | aborting loop
[2025-11-20 14:53:57] 2025-11-20 19:53:26,166 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:53:57] 2025-11-20 19:53:26,454 | INFO     | all job control threads have been joined
[2025-11-20 14:53:57] 2025-11-20 19:53:26,625 | INFO     | all data control threads have been joined
[2025-11-20 14:53:57] 2025-11-20 19:53:26,694 | INFO     | all payload control threads have been joined
[2025-11-20 14:53:57] 2025-11-20 19:53:27,170 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,173 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,278 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,393 | INFO     | [job] validate thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,460 | INFO     | [job] control thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,495 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,536 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,633 | INFO     | [data] control thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,700 | INFO     | [payload] control thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:27,949 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:28,173 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:28,339 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:28,377 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:53:57] 2025-11-20 19:53:28,403 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:28,560 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:53:57] 2025-11-20 19:53:28,766 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:29,565 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:32,385 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:53:57] 2025-11-20 19:53:35,029 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:53:57] 2025-11-20 19:53:35,580 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139749504534336)>', '<ExcThread(monitor, started 139748630849280)>']
[2025-11-20 14:53:57] 2025-11-20 19:53:40,606 | INFO     | all workflow threads have been joined
[2025-11-20 14:53:57] 2025-11-20 19:53:40,606 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:53:57] 2025-11-20 19:53:40,607 | INFO     | traces error code: 0
[2025-11-20 14:53:57] 2025-11-20 19:53:40,607 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:53:57] 2025-11-20 19:53:56,755 | INFO     | PID=3854507 has CPU usage=2.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 14:53:57] 2025-11-20 19:53:56,755 | INFO     | .. there are 31 such processes running
[2025-11-20 14:53:57] 2025-11-20 19:53:56,756 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:53:57] 2025-11-20 19:53:56,756 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:53:57] 2025-11-20 19:53:56,756 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:53:57] 2025-11-20 19:53:56,756 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:53:57] 2025-11-20 19:53:56,756 | INFO     | [monitor] control thread has ended
[2025-11-20 14:53:57] 2025-11-20 19:53:56,959 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:53:57] 2025-11-20 19:53:56,963 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:53:57] 2025-11-20 19:53:56,966 [wrapper] pilotpid: 3854507
[2025-11-20 14:53:57] 2025-11-20 19:53:56,971 [wrapper] Pilot exit status: 0
[2025-11-20 14:53:57] 2025-11-20 19:53:57,001 [wrapper] pandaids: 6891594330
[2025-11-20 14:53:57] 2025-11-20 19:53:57,096 [wrapper] cleanup supervisor_pilot 3505088 3854508
[2025-11-20 14:53:57] 2025-11-20 19:53:57,104 [wrapper] Test setup, not cleaning
[2025-11-20 14:53:57] 2025-11-20 19:53:57,107 [wrapper] apfmon messages muted
[2025-11-20 14:53:57] 2025-11-20 19:53:57,110 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:53:57] 2025-11-20 19:53:57,113 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:53:57]  *** Error codes and diagnostics ***
[2025-11-20 14:53:57]     "exeErrorCode": 0,
[2025-11-20 14:53:57]     "exeErrorDiag": "",
[2025-11-20 14:53:57]     "pilotErrorCode": 0,
[2025-11-20 14:53:57]     "pilotErrorDiag": "",
[2025-11-20 14:53:57]  *** Listing of results directory ***
[2025-11-20 14:53:57] total 1319868
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:36 pilot3.tar.gz
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:37 queuedata.json
[2025-11-20 14:53:57] -rwx------. 1 boincer umatlas     36292 Nov 18 13:39 runpilot2-wrapper.sh
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas       100 Nov 19 19:06 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:53:57] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 19:06 run_atlas
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas       105 Nov 19 19:06 job.xml
[2025-11-20 14:53:57] -rw-r--r--. 2 boincer umatlas 408921551 Nov 19 19:06 EVNT.47493065._000763.pool.root.1
[2025-11-20 14:53:57] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 19:06 start_atlas.sh
[2025-11-20 14:53:57] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 19:06 shared
[2025-11-20 14:53:57] -rw-r--r--. 2 boincer umatlas    590097 Nov 19 19:06 input.tar.gz
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas         0 Nov 19 19:06 boinc_lockfile
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas      2773 Nov 19 19:06 pandaJob.out
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas    989435 Nov 19 19:06 agis_schedconf.cvmfs.json
[2025-11-20 14:53:57] drwx------. 5 boincer umatlas      4096 Nov 19 19:06 pilot3
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas       533 Nov 20 14:34 boinc_task_state.xml
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas      6841 Nov 20 14:49 init_data.xml
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas 915944483 Nov 20 14:52 HITS.47493068._006274.pool.root.1
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas      1057 Nov 20 14:53 memory_monitor_summary.json
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas        95 Nov 20 14:53 pilot_heartbeat.json
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas   1526164 Nov 20 14:53 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas   2363430 Nov 20 14:53 log.47493068._006274.job.log.tgz.1
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas      8634 Nov 20 14:53 heartbeat.json
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 14:53 boinc_mmap_file
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas        29 Nov 20 14:53 wrapper_checkpoint.txt
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas       823 Nov 20 14:53 pilotlog.txt
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas   9013985 Nov 20 14:53 log.47493068._006274.job.log.1
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas       353 Nov 20 14:53 output.list
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas       620 Nov 20 14:53 runtime_log
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas  11397120 Nov 20 14:53 result.tar.gz
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas       661 Nov 20 14:53 Y2aKDm2mff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm2HGKDmhTYmim.diag
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas      8709 Nov 20 14:53 runtime_log.err
[2025-11-20 14:53:57] -rw-r--r--. 1 boincer umatlas     21424 Nov 20 14:53 stderr.txt
[2025-11-20 14:53:57] HITS file was successfully produced:
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas 915944483 Nov 20 14:52 shared/HITS.pool.root.1
[2025-11-20 14:53:57]  *** Contents of shared directory: ***
[2025-11-20 14:53:57] total 1305556
[2025-11-20 14:53:57] -rw-r--r--. 2 boincer umatlas 408921551 Nov 19 19:06 ATLAS.root_0
[2025-11-20 14:53:57] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 19:06 start_atlas.sh
[2025-11-20 14:53:57] -rw-r--r--. 2 boincer umatlas    590097 Nov 19 19:06 input.tar.gz
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas 915944483 Nov 20 14:52 HITS.pool.root.1
[2025-11-20 14:53:57] -rw-------. 1 boincer umatlas  11397120 Nov 20 14:53 result.tar.gz
14:53:58 (3850837): run_atlas exited; CPU time 250512.157669
14:53:58 (3850837): called boinc_finish(0)

</stderr_txt>
]]>

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