Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
17:03:40 (751112): wrapper (7.7.26015): starting
17:03:40 (751112): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 17:03:40] Arguments: --nthreads 8
[2025-11-19 17:03:40] Threads: 8
[2025-11-19 17:03:40] Checking for CVMFS
[2025-11-19 17:03:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 17:03:40] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 17:03:40] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 17:03:41] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 17:03:41] 2.13.2.0 6111 24932 211752 153057 1 572 24237482 40960001 10973 16776704 0 18037041 99.721 11218958 35941 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 17:03:41] CVMFS is ok
[2025-11-19 17:03:41] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 17:03:41] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 17:03:41] Further information can be found at the LHC@home message board.
[2025-11-19 17:03:41] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 17:03:41] Checking for apptainer binary...
[2025-11-19 17:03:41] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 17:03:41] Running /usr/bin/apptainer --version
[2025-11-19 17:03:41] apptainer version 1.4.4-1.el9
[2025-11-19 17:03:41] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 17:03:42] c-210-35-3.aglt2.org
[2025-11-19 17:03:42] apptainer works
[2025-11-19 17:03:42] Set ATHENA_PROC_NUMBER=8
[2025-11-19 17:03:42] Set ATHENA_CORE_NUMBER=8
[2025-11-19 17:03:42] Starting ATLAS job with PandaID=6891564406
[2025-11-19 17:03:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:58:53]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:58:53] 2025-11-20 19:58:18,250 | INFO     | PID=754897 has CPU usage=13.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 14:58:53] 2025-11-20 19:58:18,250 | INFO     | .. there are 9 such processes running
[2025-11-20 14:58:53] 2025-11-20 19:58:19,248 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 14:58:53] 2025-11-20 19:58:19,250 | INFO     | time since job start (78830s) is within the limit (172800.0s)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,254 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2691.336785714286
[2025-11-20 14:58:53] 2025-11-20 19:58:19,267 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891564406/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,268 | INFO     | extracted standard info from prmon json
[2025-11-20 14:58:53] 2025-11-20 19:58:19,268 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 14:58:53] 2025-11-20 19:58:19,269 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 14:58:53] 2025-11-20 19:58:19,294 | INFO     | fitting pss+swap vs Time
[2025-11-20 14:58:53] 2025-11-20 19:58:19,296 | INFO     | sum of square deviations: 667337278115.8611
[2025-11-20 14:58:53] 2025-11-20 19:58:19,324 | INFO     | sum of deviations: 6012158839763.916
[2025-11-20 14:58:53] 2025-11-20 19:58:19,324 | INFO     | mean x: 1763629318.1673121
[2025-11-20 14:58:53] 2025-11-20 19:58:19,325 | INFO     | mean y: 2896518.305964369
[2025-11-20 14:58:53] 2025-11-20 19:58:19,325 | INFO     | intersect: -15885950011.02806
[2025-11-20 14:58:53] 2025-11-20 19:58:19,326 | INFO     | chi2: 13.488903777543914
[2025-11-20 14:58:53] 2025-11-20 19:58:19,328 | INFO     | sum of square deviations: 659616361818.0063
[2025-11-20 14:58:53] 2025-11-20 19:58:19,357 | INFO     | sum of deviations: 6490107084665.425
[2025-11-20 14:58:53] 2025-11-20 19:58:19,358 | INFO     | mean x: 1763629165.6796267
[2025-11-20 14:58:53] 2025-11-20 19:58:19,358 | INFO     | mean y: 2905958.7752721617
[2025-11-20 14:58:53] 2025-11-20 19:58:19,358 | INFO     | intersect: -17349820270.380947
[2025-11-20 14:58:53] 2025-11-20 19:58:19,359 | INFO     | chi2: 9.747886507493174
[2025-11-20 14:58:53] 2025-11-20 19:58:19,359 | INFO     | current chi2=9.747886507493174 (change=27.73403481666701 %)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,361 | INFO     | sum of square deviations: 651955182398.1425
[2025-11-20 14:58:53] 2025-11-20 19:58:19,389 | INFO     | sum of deviations: 6564486365221.491
[2025-11-20 14:58:53] 2025-11-20 19:58:19,389 | INFO     | mean x: 1763629013.1912568
[2025-11-20 14:58:53] 2025-11-20 19:58:19,390 | INFO     | mean y: 2907435.169398907
[2025-11-20 14:58:53] 2025-11-20 19:58:19,390 | INFO     | intersect: -17754936850.717243
[2025-11-20 14:58:53] 2025-11-20 19:58:19,391 | INFO     | chi2: 9.377343805517246
[2025-11-20 14:58:53] 2025-11-20 19:58:19,391 | INFO     | current chi2=9.377343805517246 (change=3.8012619626941 %)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,391 | INFO     | right removable region: 1280
[2025-11-20 14:58:53] 2025-11-20 19:58:19,393 | INFO     | sum of square deviations: 659613867528.0061
[2025-11-20 14:58:53] 2025-11-20 19:58:19,422 | INFO     | sum of deviations: 5504584818940.697
[2025-11-20 14:58:53] 2025-11-20 19:58:19,423 | INFO     | mean x: 1763629470.6796267
[2025-11-20 14:58:53] 2025-11-20 19:58:19,423 | INFO     | mean y: 2906539.9580093315
[2025-11-20 14:58:53] 2025-11-20 19:58:19,423 | INFO     | intersect: -14714867734.439434
[2025-11-20 14:58:53] 2025-11-20 19:58:19,425 | INFO     | chi2: 9.562757326633255
[2025-11-20 14:58:53] 2025-11-20 19:58:19,425 | INFO     | current chi2=9.562757326633255 (change=29.1064901615418 %)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,427 | INFO     | sum of square deviations: 651950272014.7584
[2025-11-20 14:58:53] 2025-11-20 19:58:19,463 | INFO     | sum of deviations: 5132039351981.205
[2025-11-20 14:58:53] 2025-11-20 19:58:19,464 | INFO     | mean x: 1763629623.1920376
[2025-11-20 14:58:53] 2025-11-20 19:58:19,464 | INFO     | mean y: 2913952.137392662
[2025-11-20 14:58:53] 2025-11-20 19:58:19,464 | INFO     | intersect: -13880072246.442537
[2025-11-20 14:58:53] 2025-11-20 19:58:19,466 | INFO     | chi2: 7.655245698512852
[2025-11-20 14:58:53] 2025-11-20 19:58:19,466 | INFO     | current chi2=7.655245698512852 (change=19.947297238295366 %)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,466 | INFO     | left removable region: 20
[2025-11-20 14:58:53] 2025-11-20 19:58:19,468 | INFO     | sum of square deviations: 620416436488.1992
[2025-11-20 14:58:53] 2025-11-20 19:58:19,503 | INFO     | sum of deviations: 5030689869634.226
[2025-11-20 14:58:53] 2025-11-20 19:58:19,504 | INFO     | mean x: 1763629592.7436507
[2025-11-20 14:58:53] 2025-11-20 19:58:19,504 | INFO     | mean y: 2938177.4031746034
[2025-11-20 14:58:53] 2025-11-20 19:58:19,504 | INFO     | intersect: -14297575162.029242
[2025-11-20 14:58:53] 2025-11-20 19:58:19,506 | INFO     | chi2: 0.7879503376455687
[2025-11-20 14:58:53] 2025-11-20 19:58:19,506 | INFO     | current memory leak: 8.11 B/s (using 1260 data points, chi2=0.79)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,508 | INFO     | could have reported an average CPU frequency of 2662 MHz (47 samples)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,508 | INFO     | ..............................
[2025-11-20 14:58:53] 2025-11-20 19:58:19,508 | INFO     | . Timing measurements:
[2025-11-20 14:58:53] 2025-11-20 19:58:19,508 | INFO     | . get job = 0 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,508 | INFO     | . initial setup = 4 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,508 | INFO     | . payload setup = 27 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,508 | INFO     | . stage-in = 0 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,509 | INFO     | . payload execution = 78738 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,509 | INFO     | . stage-out = 3 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,509 | INFO     | . log creation = 0 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,509 | INFO     | ..............................
[2025-11-20 14:58:53] 2025-11-20 19:58:19,622 | INFO     | 
[2025-11-20 14:58:53] 2025-11-20 19:58:19,622 | INFO     | job summary report
[2025-11-20 14:58:53] 2025-11-20 19:58:19,622 | INFO     | --------------------------------------------------
[2025-11-20 14:58:53] 2025-11-20 19:58:19,622 | INFO     | PanDA job id: 6891564406
[2025-11-20 14:58:53] 2025-11-20 19:58:19,622 | INFO     | task id: 47493068
[2025-11-20 14:58:53] 2025-11-20 19:58:19,622 | INFO     | errors: (none)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | pilot state: finished 
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | transexitcode: 0
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | exeerrorcode: 0
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | exeerrordiag: 
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | exitcode: 0
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | exitmsg: OK
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | cpuconsumptiontime: 268895 s
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | nevents: 1000
[2025-11-20 14:58:53] 2025-11-20 19:58:19,623 | INFO     | neventsw: 0
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | pid: 761553
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | pgrp: 761553
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | corecount: 8
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | event service: False
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | sizes: {0: 2297023, 1: 2297222, 12: 2297222, 22: 2297512, 23: 2297540, 78769: 2360516, 78773: 2371106, 78776: 2371162, 78782: 2371408}
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | --------------------------------------------------
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | 
[2025-11-20 14:58:53] 2025-11-20 19:58:19,624 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-20 14:58:53] 2025-11-20 19:58:19,646 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,646 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,646 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,646 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,647 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,648 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 14:58:53] 2025-11-20 19:58:19,649 | INFO     | job 6891564406 has completed (purged errors)
[2025-11-20 14:58:53] 2025-11-20 19:58:19,649 | INFO     | overall cleanup function is called
[2025-11-20 14:58:53] 2025-11-20 19:58:20,667 | INFO     | --- collectZombieJob: --- 10, [761553]
[2025-11-20 14:58:53] 2025-11-20 19:58:20,668 | INFO     | zombie collector waiting for pid 761553
[2025-11-20 14:58:53] 2025-11-20 19:58:20,668 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 14:58:53] 2025-11-20 19:58:20,668 | INFO     | collected zombie processes
[2025-11-20 14:58:53] 2025-11-20 19:58:20,668 | INFO     | will attempt to kill all subprocesses of pid=761553
[2025-11-20 14:58:53] 2025-11-20 19:58:20,991 | INFO     | process IDs to be killed: [761553] (in reverse order)
[2025-11-20 14:58:53] 2025-11-20 19:58:21,067 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 14:58:53] 2025-11-20 19:58:21,067 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 14:58:53] 2025-11-20 19:58:21,076 | INFO     | did not find any defunct processes belonging to 761553
[2025-11-20 14:58:53] 2025-11-20 19:58:21,084 | INFO     | did not find any defunct processes belonging to 761553
[2025-11-20 14:58:53] 2025-11-20 19:58:21,086 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 14:58:53] 2025-11-20 19:58:21,086 | INFO     | ready for new job
[2025-11-20 14:58:53] 2025-11-20 19:58:21,086 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 14:58:53] 2025-11-20 19:58:21,092 | INFO     | ***************************************
[2025-11-20 14:58:53] 2025-11-20 19:58:21,092 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 14:58:53] 2025-11-20 19:58:21,092 | INFO     | ***************************************
[2025-11-20 14:58:53] 2025-11-20 19:58:21,092 | INFO     | 
[2025-11-20 14:58:53] 2025-11-20 19:58:21,095 | INFO     | architecture information:
[2025-11-20 14:58:53] 2025-11-20 19:58:21,096 | INFO     | executing command: cat /etc/os-release
[2025-11-20 14:58:53] 2025-11-20 19:58:21,112 | INFO     | cat /etc/os-release:
[2025-11-20 14:58:53] NAME="CentOS Linux"
[2025-11-20 14:58:53] VERSION="7 (Core)"
[2025-11-20 14:58:53] ID="centos"
[2025-11-20 14:58:53] ID_LIKE="rhel fedora"
[2025-11-20 14:58:53] VERSION_ID="7"
[2025-11-20 14:58:53] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:58:53] ANSI_COLOR="0;31"
[2025-11-20 14:58:53] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:58:53] HOME_URL="https://www.centos.org/"
[2025-11-20 14:58:53] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:58:53] 
[2025-11-20 14:58:53] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:58:53] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:58:53] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:58:53] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:58:53] 
[2025-11-20 14:58:53] 2025-11-20 19:58:21,112 | INFO     | ***************************************
[2025-11-20 14:58:53] 2025-11-20 19:58:21,615 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-20 14:58:53] 2025-11-20 19:58:21,631 | INFO     | sufficient remaining disk space (71814873088 B)
[2025-11-20 14:58:53] 2025-11-20 19:58:21,632 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:58:53] 2025-11-20 19:58:21,632 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:58:53] 2025-11-20 19:58:21,632 | INFO     | update_server=False
[2025-11-20 14:58:53] 2025-11-20 19:58:21,632 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:58:53] 2025-11-20 19:58:21,632 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:58:53] 2025-11-20 19:58:21,633 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:58:53] 2025-11-20 19:58:21,633 | INFO     | aborting loop
[2025-11-20 14:58:53] 2025-11-20 19:58:22,105 | INFO     | all data control threads have been joined
[2025-11-20 14:58:53] 2025-11-20 19:58:22,541 | INFO     | all job control threads have been joined
[2025-11-20 14:58:53] 2025-11-20 19:58:22,637 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:22,638 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:22,675 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:22,706 | INFO     | [job] validate thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:22,866 | INFO     | all payload control threads have been joined
[2025-11-20 14:58:53] 2025-11-20 19:58:23,000 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,110 | INFO     | [data] control thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,410 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,413 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,417 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,494 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,547 | INFO     | [job] control thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,614 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,643 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:23,871 | INFO     | [payload] control thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:24,426 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:58:53] 2025-11-20 19:58:24,633 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:58:53] 2025-11-20 19:58:25,638 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:28,434 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:58:53] 2025-11-20 19:58:46,736 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:58:53] 2025-11-20 19:58:48,191 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139660858816320)>', '<ExcThread(monitor, started 139660365907712)>']
[2025-11-20 14:58:53] 2025-11-20 19:58:52,693 | INFO     | PID=754897 has CPU usage=3.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 14:58:53] 2025-11-20 19:58:52,693 | INFO     | .. there are 9 such processes running
[2025-11-20 14:58:53] 2025-11-20 19:58:52,693 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:58:53] 2025-11-20 19:58:52,693 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:58:53] 2025-11-20 19:58:52,694 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:58:53] 2025-11-20 19:58:52,694 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:58:53] 2025-11-20 19:58:52,694 | INFO     | [monitor] control thread has ended
[2025-11-20 14:58:53] 2025-11-20 19:58:53,216 | INFO     | all workflow threads have been joined
[2025-11-20 14:58:53] 2025-11-20 19:58:53,216 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:58:53] 2025-11-20 19:58:53,216 | INFO     | traces error code: 0
[2025-11-20 14:58:53] 2025-11-20 19:58:53,217 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:58:53] 2025-11-20 19:58:53,388 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:58:53] 2025-11-20 19:58:53,392 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:58:53] 2025-11-20 19:58:53,395 [wrapper] pilotpid: 754897
[2025-11-20 14:58:53] 2025-11-20 19:58:53,398 [wrapper] Pilot exit status: 0
[2025-11-20 14:58:53] 2025-11-20 19:58:53,414 [wrapper] pandaids: 6891564406
[2025-11-20 14:58:53] 2025-11-20 19:58:53,466 [wrapper] cleanup supervisor_pilot 2537655 754898
[2025-11-20 14:58:53] 2025-11-20 19:58:53,471 [wrapper] Test setup, not cleaning
[2025-11-20 14:58:53] 2025-11-20 19:58:53,475 [wrapper] apfmon messages muted
[2025-11-20 14:58:53] 2025-11-20 19:58:53,479 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:58:53] 2025-11-20 19:58:53,482 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:58:53]  *** Error codes and diagnostics ***
[2025-11-20 14:58:53]     "exeErrorCode": 0,
[2025-11-20 14:58:53]     "exeErrorDiag": "",
[2025-11-20 14:58:53]     "pilotErrorCode": 0,
[2025-11-20 14:58:53]     "pilotErrorDiag": "",
[2025-11-20 14:58:53]  *** Listing of results directory ***
[2025-11-20 14:58:53] total 1325892
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-20 14:58:53] -rwx------. 1 boincer umatlas     36292 Nov 18 10:26 runpilot2-wrapper.sh
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:27 queuedata.json
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas       100 Nov 19 17:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:58:53] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 17:03 run_atlas
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas       105 Nov 19 17:03 job.xml
[2025-11-20 14:58:53] -rw-r--r--. 2 boincer umatlas 407782537 Nov 19 17:03 EVNT.47493065._000116.pool.root.1
[2025-11-20 14:58:53] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 17:03 start_atlas.sh
[2025-11-20 14:58:53] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 17:03 shared
[2025-11-20 14:58:53] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 17:03 input.tar.gz
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas         0 Nov 19 17:03 boinc_lockfile
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas      2770 Nov 19 17:03 pandaJob.out
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas    989443 Nov 19 17:04 agis_schedconf.cvmfs.json
[2025-11-20 14:58:53] drwx------. 5 boincer umatlas      4096 Nov 19 17:04 pilot3
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas       533 Nov 20 14:48 boinc_task_state.xml
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas 919697542 Nov 20 14:57 HITS.47493068._001151.pool.root.1
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas        95 Nov 20 14:57 pilot_heartbeat.json
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas      1057 Nov 20 14:58 memory_monitor_summary.json
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas   1526164 Nov 20 14:58 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas   2439868 Nov 20 14:58 log.47493068._001151.job.log.tgz.1
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas      8620 Nov 20 14:58 heartbeat.json
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas      6841 Nov 20 14:58 init_data.xml
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas        29 Nov 20 14:58 wrapper_checkpoint.txt
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 14:58 boinc_mmap_file
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas      4822 Nov 20 14:58 pilotlog.txt
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas  10714982 Nov 20 14:58 log.47493068._001151.job.log.1
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas       353 Nov 20 14:58 output.list
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas       620 Nov 20 14:58 runtime_log
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas  13178880 Nov 20 14:58 result.tar.gz
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas       663 Nov 20 14:58 S1MNDmSmcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmbOFKDmklBNjm.diag
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas      8714 Nov 20 14:58 runtime_log.err
[2025-11-20 14:58:53] -rw-r--r--. 1 boincer umatlas     21399 Nov 20 14:58 stderr.txt
[2025-11-20 14:58:53] HITS file was successfully produced:
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas 919697542 Nov 20 14:57 shared/HITS.pool.root.1
[2025-11-20 14:58:53]  *** Contents of shared directory: ***
[2025-11-20 14:58:53] total 1309844
[2025-11-20 14:58:53] -rw-r--r--. 2 boincer umatlas 407782537 Nov 19 17:03 ATLAS.root_0
[2025-11-20 14:58:53] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 17:03 start_atlas.sh
[2025-11-20 14:58:53] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 17:03 input.tar.gz
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas 919697542 Nov 20 14:57 HITS.pool.root.1
[2025-11-20 14:58:53] -rw-------. 1 boincer umatlas  13178880 Nov 20 14:58 result.tar.gz
14:58:55 (751112): run_atlas exited; CPU time 269484.506095
14:58:55 (751112): called boinc_finish(0)

</stderr_txt>
]]>

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