Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:29 (1387169): wrapper (7.7.26015): starting
00:04:29 (1387169): wrapper: running run_atlas (--nthreads 9)
[2025-11-20 00:04:29] Arguments: --nthreads 9
[2025-11-20 00:04:29] Threads: 9
[2025-11-20 00:04:29] Checking for CVMFS
[2025-11-20 00:04:30] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:04:30] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:04:30] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:04:31] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:04:31] 2.13.3.0 8749 20962 218828 153069 1 433 18933117 21042176 16011 16776704 0 93106994 99.567 106153540 31316 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-20 00:04:31] CVMFS is ok
[2025-11-20 00:04:31] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:04:31] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:04:31] Further information can be found at the LHC@home message board.
[2025-11-20 00:04:31] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:04:31] Checking for apptainer binary...
[2025-11-20 00:04:31] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:04:31] Running /usr/bin/apptainer --version
[2025-11-20 00:04:31] apptainer version 1.4.4-1.el9
[2025-11-20 00:04:31] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:04:32] c-16-10.aglt2.org
[2025-11-20 00:04:32] apptainer works
[2025-11-20 00:04:32] Set ATHENA_PROC_NUMBER=9
[2025-11-20 00:04:32] Set ATHENA_CORE_NUMBER=9
[2025-11-20 00:04:32] Starting ATLAS job with PandaID=6891596302
[2025-11-20 00:04:32] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 16:34:29]  *** The last 200 lines of the pilot log: ***
[2025-11-21 16:34:29] 2025-11-21 21:33:29,622 | INFO     | time since job start (145663s) is within the limit (172800.0s)
[2025-11-21 16:34:29] 2025-11-21 21:33:30,642 | INFO     | monitor loop #8011: job 0:6891596302 is in state 'finished'
[2025-11-21 16:34:29] 2025-11-21 21:33:30,642 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:34:29] 2025-11-21 21:33:31,629 | INFO     | time since job start (145665s) is within the limit (172800.0s)
[2025-11-21 16:34:29] 2025-11-21 21:33:33,147 | INFO     | monitor loop #8012: job 0:6891596302 is in state 'finished'
[2025-11-21 16:34:29] 2025-11-21 21:33:33,147 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:34:29] 2025-11-21 21:33:33,636 | INFO     | time since job start (145667s) is within the limit (172800.0s)
[2025-11-21 16:34:29] 2025-11-21 21:33:35,643 | INFO     | time since job start (145669s) is within the limit (172800.0s)
[2025-11-21 16:34:29] 2025-11-21 21:33:35,654 | INFO     | monitor loop #8013: job 0:6891596302 is in state 'finished'
[2025-11-21 16:34:29] 2025-11-21 21:33:35,654 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:34:29] 2025-11-21 21:33:37,654 | INFO     | time since job start (145671s) is within the limit (172800.0s)
[2025-11-21 16:34:29] 2025-11-21 21:33:38,176 | INFO     | monitor loop #8014: job 0:6891596302 is in state 'finished'
[2025-11-21 16:34:29] 2025-11-21 21:33:38,177 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:34:29] 2025-11-21 21:33:39,510 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-21 16:34:29] 2025-11-21 21:33:39,532 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2899.9623
[2025-11-21 16:34:29] 2025-11-21 21:33:39,604 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891596302/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 16:34:29] 2025-11-21 21:33:39,632 | INFO     | extracted standard info from prmon json
[2025-11-21 16:34:29] 2025-11-21 21:33:39,633 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 16:34:29] 2025-11-21 21:33:39,633 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 16:34:29] 2025-11-21 21:33:39,674 | INFO     | time since job start (145673s) is within the limit (172800.0s)
[2025-11-21 16:34:29] 2025-11-21 21:33:40,101 | INFO     | fitting pss+swap vs Time
[2025-11-21 16:34:29] 2025-11-21 21:33:40,104 | INFO     | sum of square deviations: 4206919842139.0347
[2025-11-21 16:34:29] 2025-11-21 21:33:40,459 | INFO     | sum of deviations: 14879883772729.873
[2025-11-21 16:34:29] 2025-11-21 21:33:40,459 | INFO     | mean x: 1763688030.2352202
[2025-11-21 16:34:29] 2025-11-21 21:33:40,464 | INFO     | mean y: 3125521.4725366877
[2025-11-21 16:34:29] 2025-11-21 21:33:40,465 | INFO     | intersect: -6235042517.382064
[2025-11-21 16:34:29] 2025-11-21 21:33:40,468 | INFO     | chi2: 18.801244810700492
[2025-11-21 16:34:29] 2025-11-21 21:33:40,471 | INFO     | sum of square deviations: 4180520267881.601
[2025-11-21 16:34:29] 2025-11-21 21:33:40,626 | INFO     | sum of deviations: 15728023359353.65
[2025-11-21 16:34:29] 2025-11-21 21:33:40,626 | INFO     | mean x: 1763687877.7420168
[2025-11-21 16:34:29] 2025-11-21 21:33:40,627 | INFO     | mean y: 3130420.9554621847
[2025-11-21 16:34:29] 2025-11-21 21:33:40,627 | INFO     | intersect: -6632245647.62934
[2025-11-21 16:34:29] 2025-11-21 21:33:40,631 | INFO     | chi2: 15.850641174887746
[2025-11-21 16:34:29] 2025-11-21 21:33:40,631 | INFO     | current chi2=15.850641174887746 (change=15.69366106085405 %)
[2025-11-21 16:34:29] 2025-11-21 21:33:40,631 | INFO     | right removable region: 2379
[2025-11-21 16:34:29] 2025-11-21 21:33:40,634 | INFO     | sum of square deviations: 4180515561121.6016
[2025-11-21 16:34:29] 2025-11-21 21:33:40,705 | INFO     | monitor loop #8015: job 0:6891596302 is in state 'finished'
[2025-11-21 16:34:29] 2025-11-21 21:33:40,705 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 16:34:29] 2025-11-21 21:33:40,870 | INFO     | sum of deviations: 13804969610535.389
[2025-11-21 16:34:29] 2025-11-21 21:33:40,887 | INFO     | mean x: 1763688182.7420168
[2025-11-21 16:34:29] 2025-11-21 21:33:40,887 | INFO     | mean y: 3131729.62605042
[2025-11-21 16:34:29] 2025-11-21 21:33:40,887 | INFO     | intersect: -5820949393.67962
[2025-11-21 16:34:29] 2025-11-21 21:33:40,890 | INFO     | chi2: 14.279645254357485
[2025-11-21 16:34:29] 2025-11-21 21:33:40,907 | INFO     | current chi2=14.279645254357485 (change=24.049469074354032 %)
[2025-11-21 16:34:29] 2025-11-21 21:33:40,907 | INFO     | left removable region: 10
[2025-11-21 16:34:29] 2025-11-21 21:33:40,910 | INFO     | sum of square deviations: 4122821416671.4688
[2025-11-21 16:34:29] 2025-11-21 21:33:41,723 | INFO     | time since job start (145675s) is within the limit (172800.0s)
[2025-11-21 16:34:29] 2025-11-21 21:33:41,927 | INFO     | sum of deviations: 13850040125911.688
[2025-11-21 16:34:29] 2025-11-21 21:33:41,928 | INFO     | mean x: 1763688152.2562263
[2025-11-21 16:34:29] 2025-11-21 21:33:41,928 | INFO     | mean y: 3143263.715491769
[2025-11-21 16:34:29] 2025-11-21 21:33:41,928 | INFO     | intersect: -5921719641.955758
[2025-11-21 16:34:29] 2025-11-21 21:33:41,931 | INFO     | chi2: 7.146989810262865
[2025-11-21 16:34:29] 2025-11-21 21:33:41,931 | INFO     | current memory leak: 3.36 B/s (using 2369 data points, chi2=7.15)
[2025-11-21 16:34:29] 2025-11-21 21:33:41,933 | INFO     | could have reported an average CPU frequency of 2899 MHz (82 samples)
[2025-11-21 16:34:29] 2025-11-21 21:33:41,933 | INFO     | ..............................
[2025-11-21 16:34:29] 2025-11-21 21:33:41,934 | INFO     | . Timing measurements:
[2025-11-21 16:34:29] 2025-11-21 21:33:41,934 | INFO     | . get job = 0 s
[2025-11-21 16:34:29] 2025-11-21 21:33:41,934 | INFO     | . initial setup = 8 s
[2025-11-21 16:34:29] 2025-11-21 21:33:41,934 | INFO     | . payload setup = 54 s
[2025-11-21 16:34:29] 2025-11-21 21:33:41,934 | INFO     | . stage-in = 0 s
[2025-11-21 16:34:29] 2025-11-21 21:33:41,934 | INFO     | . payload execution = 145517 s
[2025-11-21 16:34:29] 2025-11-21 21:33:41,935 | INFO     | . stage-out = 5 s
[2025-11-21 16:34:29] 2025-11-21 21:33:41,935 | INFO     | . log creation = 1 s
[2025-11-21 16:34:29] 2025-11-21 21:33:41,935 | INFO     | ..............................
[2025-11-21 16:34:29] 2025-11-21 21:33:42,294 | INFO     | 
[2025-11-21 16:34:29] 2025-11-21 21:33:42,295 | INFO     | job summary report
[2025-11-21 16:34:29] 2025-11-21 21:33:42,295 | INFO     | --------------------------------------------------
[2025-11-21 16:34:29] 2025-11-21 21:33:42,295 | INFO     | PanDA job id: 6891596302
[2025-11-21 16:34:29] 2025-11-21 21:33:42,295 | INFO     | task id: 47493068
[2025-11-21 16:34:29] 2025-11-21 21:33:42,296 | INFO     | errors: (none)
[2025-11-21 16:34:29] 2025-11-21 21:33:42,296 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 16:34:29] 2025-11-21 21:33:42,296 | INFO     | pilot state: finished 
[2025-11-21 16:34:29] 2025-11-21 21:33:42,296 | INFO     | transexitcode: 0
[2025-11-21 16:34:29] 2025-11-21 21:33:42,296 | INFO     | exeerrorcode: 0
[2025-11-21 16:34:29] 2025-11-21 21:33:42,296 | INFO     | exeerrordiag: 
[2025-11-21 16:34:29] 2025-11-21 21:33:42,297 | INFO     | exitcode: 0
[2025-11-21 16:34:29] 2025-11-21 21:33:42,297 | INFO     | exitmsg: OK
[2025-11-21 16:34:29] 2025-11-21 21:33:42,297 | INFO     | cpuconsumptiontime: 511329 s
[2025-11-21 16:34:29] 2025-11-21 21:33:42,297 | INFO     | nevents: 1000
[2025-11-21 16:34:29] 2025-11-21 21:33:42,297 | INFO     | neventsw: 0
[2025-11-21 16:34:29] 2025-11-21 21:33:42,297 | INFO     | pid: 1400666
[2025-11-21 16:34:29] 2025-11-21 21:33:42,300 | INFO     | pgrp: 1400666
[2025-11-21 16:34:29] 2025-11-21 21:33:42,300 | INFO     | corecount: 9
[2025-11-21 16:34:29] 2025-11-21 21:33:42,303 | INFO     | event service: False
[2025-11-21 16:34:29] 2025-11-21 21:33:42,303 | INFO     | sizes: {0: 2296973, 1: 2297029, 2: 2297085, 3: 2297256, 4: 2297284, 15: 2297312, 26: 2297468, 30: 2297758, 37: 2297786, 145575: 2387181, 145576: 2387180, 145583: 2
[2025-11-21 16:34:29] 2025-11-21 21:33:42,303 | INFO     | --------------------------------------------------
[2025-11-21 16:34:29] 2025-11-21 21:33:42,303 | INFO     | 
[2025-11-21 16:34:29] 2025-11-21 21:33:42,304 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-21 16:34:29] 2025-11-21 21:33:42,368 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,369 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,369 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,369 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,369 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,369 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,370 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,370 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,370 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,370 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,370 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,370 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,371 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,371 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,371 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,371 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,371 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,371 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 16:34:29] 2025-11-21 21:33:42,372 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,372 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 16:34:29] 2025-11-21 21:33:42,372 | INFO     | job 6891596302 has completed (purged errors)
[2025-11-21 16:34:29] 2025-11-21 21:33:42,372 | INFO     | overall cleanup function is called
[2025-11-21 16:34:29] 2025-11-21 21:33:43,398 | INFO     | --- collectZombieJob: --- 10, [1400666]
[2025-11-21 16:34:29] 2025-11-21 21:33:43,398 | INFO     | zombie collector waiting for pid 1400666
[2025-11-21 16:34:29] 2025-11-21 21:33:43,398 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 16:34:29] 2025-11-21 21:33:43,398 | INFO     | collected zombie processes
[2025-11-21 16:34:29] 2025-11-21 21:33:43,399 | INFO     | will attempt to kill all subprocesses of pid=1400666
[2025-11-21 16:34:29] 2025-11-21 21:33:43,943 | INFO     | process IDs to be killed: [1400666] (in reverse order)
[2025-11-21 16:34:29] 2025-11-21 21:33:44,112 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 16:34:29] 2025-11-21 21:33:44,112 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 16:34:29] 2025-11-21 21:33:44,131 | INFO     | did not find any defunct processes belonging to 1400666
[2025-11-21 16:34:29] 2025-11-21 21:33:44,149 | INFO     | did not find any defunct processes belonging to 1400666
[2025-11-21 16:34:29] 2025-11-21 21:33:44,151 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 16:34:29] 2025-11-21 21:33:44,151 | INFO     | ready for new job
[2025-11-21 16:34:29] 2025-11-21 21:33:44,151 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 16:34:29] 2025-11-21 21:33:44,160 | INFO     | ***************************************
[2025-11-21 16:34:29] 2025-11-21 21:33:44,160 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 16:34:29] 2025-11-21 21:33:44,160 | INFO     | ***************************************
[2025-11-21 16:34:29] 2025-11-21 21:33:44,160 | INFO     | 
[2025-11-21 16:34:29] 2025-11-21 21:33:44,162 | INFO     | architecture information:
[2025-11-21 16:34:29] 2025-11-21 21:33:44,163 | INFO     | executing command: cat /etc/os-release
[2025-11-21 16:34:29] 2025-11-21 21:33:44,190 | INFO     | cat /etc/os-release:
[2025-11-21 16:34:29] NAME="CentOS Linux"
[2025-11-21 16:34:29] VERSION="7 (Core)"
[2025-11-21 16:34:29] ID="centos"
[2025-11-21 16:34:29] ID_LIKE="rhel fedora"
[2025-11-21 16:34:29] VERSION_ID="7"
[2025-11-21 16:34:29] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 16:34:29] ANSI_COLOR="0;31"
[2025-11-21 16:34:29] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 16:34:29] HOME_URL="https://www.centos.org/"
[2025-11-21 16:34:29] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 16:34:29] 
[2025-11-21 16:34:29] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 16:34:29] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 16:34:29] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 16:34:29] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 16:34:29] 
[2025-11-21 16:34:29] 2025-11-21 21:33:44,190 | INFO     | ***************************************
[2025-11-21 16:34:29] 2025-11-21 21:33:44,693 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-21 16:34:29] 2025-11-21 21:33:44,724 | INFO     | sufficient remaining disk space (51167363072 B)
[2025-11-21 16:34:29] 2025-11-21 21:33:44,725 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 16:34:29] 2025-11-21 21:33:44,725 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 16:34:29] 2025-11-21 21:33:44,725 | INFO     | update_server=False
[2025-11-21 16:34:29] 2025-11-21 21:33:44,725 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 16:34:29] 2025-11-21 21:33:44,727 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:34:29] 2025-11-21 21:33:44,727 | INFO     | aborting loop
[2025-11-21 16:34:29] 2025-11-21 21:33:44,821 | INFO     | all job control threads have been joined
[2025-11-21 16:34:29] 2025-11-21 21:33:44,969 | INFO     | all payload control threads have been joined
[2025-11-21 16:34:29] 2025-11-21 21:33:44,993 | INFO     | all data control threads have been joined
[2025-11-21 16:34:29] 2025-11-21 21:33:45,733 | INFO     | [job] job monitor thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:45,735 | INFO     | [job] retrieve thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:45,787 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:45,826 | INFO     | [job] control thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:45,971 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 16:34:29] 2025-11-21 21:33:45,975 | INFO     | [payload] control thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:45,999 | INFO     | [data] control thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:46,335 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:46,416 | INFO     | [payload] failed_post thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:46,431 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:46,484 | INFO     | [payload] validate_post thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:46,996 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:47,036 | INFO     | [job] validate thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:47,105 | INFO     | [data] copytool_in thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:47,129 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:34:29] 2025-11-21 21:33:47,511 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 16:34:29] 2025-11-21 21:33:47,979 | INFO     | [data] copytool_out thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:48,135 | INFO     | [job] queue monitor thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:33:51,520 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 16:34:29] 2025-11-21 21:34:16,112 | INFO     | PID=1392353 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:34:29] 2025-11-21 21:34:16,113 | INFO     | .. there are 35 such processes running
[2025-11-21 16:34:29] 2025-11-21 21:34:16,113 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 16:34:29] 2025-11-21 21:34:16,113 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 16:34:29] 2025-11-21 21:34:16,113 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 16:34:29] 2025-11-21 21:34:21,503 | INFO     | [monitor] cgroup control has ended
[2025-11-21 16:34:29] 2025-11-21 21:34:23,249 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139677731915584)>', '<ExcThread(monitor, started 139677076014848)>']
[2025-11-21 16:34:29] 2025-11-21 21:34:24,163 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 16:34:29] 2025-11-21 21:34:24,163 | INFO     | [monitor] control thread has ended
[2025-11-21 16:34:29] 2025-11-21 21:34:28,275 | INFO     | all workflow threads have been joined
[2025-11-21 16:34:29] 2025-11-21 21:34:28,275 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 16:34:29] 2025-11-21 21:34:28,275 | INFO     | traces error code: 0
[2025-11-21 16:34:29] 2025-11-21 21:34:28,276 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 16:34:29] 2025-11-21 21:34:28,589 [wrapper] ==== pilot stdout END ====
[2025-11-21 16:34:29] 2025-11-21 21:34:28,608 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 16:34:29] 2025-11-21 21:34:28,638 [wrapper] pilotpid: 1392353
[2025-11-21 16:34:29] 2025-11-21 21:34:28,671 [wrapper] Pilot exit status: 0
[2025-11-21 16:34:29] 2025-11-21 21:34:28,712 [wrapper] pandaids: 6891596302
[2025-11-21 16:34:29] 2025-11-21 21:34:28,819 [wrapper] cleanup supervisor_pilot  102378 1392354
[2025-11-21 16:34:29] 2025-11-21 21:34:28,830 [wrapper] Test setup, not cleaning
[2025-11-21 16:34:29] 2025-11-21 21:34:28,839 [wrapper] apfmon messages muted
[2025-11-21 16:34:29] 2025-11-21 21:34:28,851 [wrapper] ==== wrapper stdout END ====
[2025-11-21 16:34:29] 2025-11-21 21:34:28,872 [wrapper] ==== wrapper stderr END ====
[2025-11-21 16:34:29]  *** Error codes and diagnostics ***
[2025-11-21 16:34:29]     "exeErrorCode": 0,
[2025-11-21 16:34:29]     "exeErrorDiag": "",
[2025-11-21 16:34:29]     "pilotErrorCode": 0,
[2025-11-21 16:34:29]     "pilotErrorDiag": "",
[2025-11-21 16:34:29]  *** Listing of results directory ***
[2025-11-21 16:34:29] total 1346456
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:36 pilot3.tar.gz
[2025-11-21 16:34:29] -rwx------. 1 boincer umatlas     36292 Nov 18 13:48 runpilot2-wrapper.sh
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:48 queuedata.json
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 16:34:29] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:04 run_atlas
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:04 job.xml
[2025-11-21 16:34:29] -rw-r--r--. 2 boincer umatlas 410520120 Nov 20 00:04 EVNT.47493065._000776.pool.root.1
[2025-11-21 16:34:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:04 start_atlas.sh
[2025-11-21 16:34:29] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:04 shared
[2025-11-21 16:34:29] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:04 input.tar.gz
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:04 boinc_lockfile
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas      2773 Nov 20 00:04 pandaJob.out
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas    989427 Nov 20 00:05 agis_schedconf.cvmfs.json
[2025-11-21 16:34:29] drwx------. 5 boincer umatlas      4096 Nov 20 00:05 pilot3
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas       534 Nov 21 16:15 boinc_task_state.xml
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas      6526 Nov 21 16:28 init_data.xml
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas 923020934 Nov 21 16:32 HITS.47493068._006404.pool.root.1
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas      1053 Nov 21 16:33 memory_monitor_summary.json
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas   1526164 Nov 21 16:33 agis_ddmendpoints.agis.ALL.json
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas   3210747 Nov 21 16:33 log.47493068._006404.job.log.tgz.1
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas        95 Nov 21 16:33 pilot_heartbeat.json
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas      8619 Nov 21 16:33 heartbeat.json
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 16:34 boinc_mmap_file
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas        30 Nov 21 16:34 wrapper_checkpoint.txt
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas      4824 Nov 21 16:34 pilotlog.txt
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas  17443365 Nov 21 16:34 log.47493068._006404.job.log.1
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas       353 Nov 21 16:34 output.list
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas       620 Nov 21 16:34 runtime_log
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas  20674560 Nov 21 16:34 result.tar.gz
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas       664 Nov 21 16:34 VwAODm9vff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmjiFKDmJEbXHm.diag
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas      8700 Nov 21 16:34 runtime_log.err
[2025-11-21 16:34:29] -rw-r--r--. 1 boincer umatlas     21816 Nov 21 16:34 stderr.txt
[2025-11-21 16:34:29] HITS file was successfully produced:
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas 923020934 Nov 21 16:32 shared/HITS.pool.root.1
[2025-11-21 16:34:29]  *** Contents of shared directory: ***
[2025-11-21 16:34:29] total 1323084
[2025-11-21 16:34:29] -rw-r--r--. 2 boincer umatlas 410520120 Nov 20 00:04 ATLAS.root_0
[2025-11-21 16:34:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:04 start_atlas.sh
[2025-11-21 16:34:29] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:04 input.tar.gz
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas 923020934 Nov 21 16:32 HITS.pool.root.1
[2025-11-21 16:34:29] -rw-------. 1 boincer umatlas  20674560 Nov 21 16:34 result.tar.gz
16:34:30 (1387169): run_atlas exited; CPU time 517089.663480
16:34:30 (1387169): called boinc_finish(0)

</stderr_txt>
]]>

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