Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:04:57 (3587622): wrapper (7.7.26015): starting
00:04:57 (3587622): wrapper: running run_atlas (--nthreads 8)
[2025-11-20 00:04:57] Arguments: --nthreads 8
[2025-11-20 00:04:57] Threads: 8
[2025-11-20 00:04:57] Checking for CVMFS
[2025-11-20 00:04:58] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 00:04:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 00:04:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 00:05:02] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 00:05:02] 2.13.2.0 9698 24760 259688 153069 1 407 32393579 40960000 15685 16776704 0 18457754 99.526 18615211 27852 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-20 00:05:02] CVMFS is ok
[2025-11-20 00:05:02] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 00:05:02] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 00:05:02] Further information can be found at the LHC@home message board.
[2025-11-20 00:05:02] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 00:05:02] Checking for apptainer binary...
[2025-11-20 00:05:02] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 00:05:02] Running /usr/bin/apptainer --version
[2025-11-20 00:05:02] apptainer version 1.4.4-1.el9
[2025-11-20 00:05:02] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 00:05:03] c-210-8.aglt2.org
[2025-11-20 00:05:03] apptainer works
[2025-11-20 00:05:03] Set ATHENA_PROC_NUMBER=8
[2025-11-20 00:05:03] Set ATHENA_CORE_NUMBER=8
[2025-11-20 00:05:03] Starting ATLAS job with PandaID=6891599164
[2025-11-20 00:05:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 10:22:00]  *** The last 200 lines of the pilot log: ***
[2025-11-21 10:22:00] 2025-11-21 15:21:17,654 | INFO     | finished stage-out for finished payload, adding job to finished_jobs queue
[2025-11-21 10:22:00] 2025-11-21 15:21:17,757 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 10:22:00] 2025-11-21 15:21:17,758 | INFO     | job 6891599164 has state=finished
[2025-11-21 10:22:00] 2025-11-21 15:21:17,758 | INFO     | preparing for final server update for job 6891599164 in state='finished'
[2025-11-21 10:22:00] 2025-11-21 15:21:17,758 | INFO     | this job has now completed (state=finished)
[2025-11-21 10:22:00] 2025-11-21 15:21:17,758 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-21 10:22:00] 2025-11-21 15:21:17,759 | INFO     | log transfer has been attempted: DONE
[2025-11-21 10:22:00] 2025-11-21 15:21:17,759 | INFO     | job 6891599164 has finished - writing final server update
[2025-11-21 10:22:00] 2025-11-21 15:21:17,759 | INFO     | total number of processed events: 1000 (read)
[2025-11-21 10:22:00] 2025-11-21 15:21:17,760 | INFO     | executing command: lscpu
[2025-11-21 10:22:00] 2025-11-21 15:21:17,804 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-21 10:22:00] 2025-11-21 15:21:17,948 | INFO     | monitor loop #6685: job 0:6891599164 is in state 'finished'
[2025-11-21 10:22:00] 2025-11-21 15:21:17,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 10:22:00] 2025-11-21 15:21:18,537 | INFO     | time since job start (123265s) is within the limit (172800.0s)
[2025-11-21 10:22:00] 2025-11-21 15:21:20,452 | INFO     | monitor loop #6686: job 0:6891599164 is in state 'finished'
[2025-11-21 10:22:00] 2025-11-21 15:21:20,452 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-21 10:22:00] 2025-11-21 15:21:20,542 | INFO     | time since job start (123267s) is within the limit (172800.0s)
[2025-11-21 10:22:00] 2025-11-21 15:21:21,647 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-21 10:22:00] 2025-11-21 15:21:21,656 | INFO     | found 24 cores (12 cores per socket, 2 sockets) HT, CPU MHz: 2700.242604166667
[2025-11-21 10:22:00] 2025-11-21 15:21:21,665 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891599164/memory_monitor_summary.json (trf name=prmon)
[2025-11-21 10:22:00] 2025-11-21 15:21:21,666 | INFO     | extracted standard info from prmon json
[2025-11-21 10:22:00] 2025-11-21 15:21:21,666 | INFO     | extracted standard memory fields from prmon json
[2025-11-21 10:22:00] 2025-11-21 15:21:21,667 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-21 10:22:00] 2025-11-21 15:21:21,702 | INFO     | fitting pss+swap vs Time
[2025-11-21 10:22:00] 2025-11-21 15:21:21,705 | INFO     | sum of square deviations: 2543964848008.59
[2025-11-21 10:22:00] 2025-11-21 15:21:21,804 | INFO     | sum of deviations: 16837206596740.465
[2025-11-21 10:22:00] 2025-11-21 15:21:21,804 | INFO     | mean x: 1763676935.159643
[2025-11-21 10:22:00] 2025-11-21 15:21:21,804 | INFO     | mean y: 2795289.2221120475
[2025-11-21 10:22:00] 2025-11-21 15:21:21,804 | INFO     | intersect: -11670083347.616928
[2025-11-21 10:22:00] 2025-11-21 15:21:21,807 | INFO     | chi2: 21.845341519154488
[2025-11-21 10:22:00] 2025-11-21 15:21:21,810 | INFO     | sum of square deviations: 2525092263445.1562
[2025-11-21 10:22:00] 2025-11-21 15:21:21,908 | INFO     | sum of deviations: 17394047015678.67
[2025-11-21 10:22:00] 2025-11-21 15:21:21,909 | INFO     | mean x: 1763676782.6724653
[2025-11-21 10:22:00] 2025-11-21 15:21:21,909 | INFO     | mean y: 2799787.797713718
[2025-11-21 10:22:00] 2025-11-21 15:21:21,909 | INFO     | intersect: -12146252079.483513
[2025-11-21 10:22:00] 2025-11-21 15:21:21,912 | INFO     | chi2: 19.419815208115413
[2025-11-21 10:22:00] 2025-11-21 15:21:21,912 | INFO     | current chi2=19.419815208115413 (change=11.103174143156878 %)
[2025-11-21 10:22:00] 2025-11-21 15:21:21,912 | INFO     | right removable region: 2011
[2025-11-21 10:22:00] 2025-11-21 15:21:21,915 | INFO     | sum of square deviations: 2525085915175.156
[2025-11-21 10:22:00] 2025-11-21 15:21:22,014 | INFO     | sum of deviations: 16034114894760.57
[2025-11-21 10:22:00] 2025-11-21 15:21:22,014 | INFO     | mean x: 1763677087.6724653
[2025-11-21 10:22:00] 2025-11-21 15:21:22,015 | INFO     | mean y: 2801776.4925447316
[2025-11-21 10:22:00] 2025-11-21 15:21:22,015 | INFO     | intersect: -11196421541.433813
[2025-11-21 10:22:00] 2025-11-21 15:21:22,017 | INFO     | chi2: 17.372783460136862
[2025-11-21 10:22:00] 2025-11-21 15:21:22,018 | INFO     | current chi2=17.372783460136862 (change=20.47373832583934 %)
[2025-11-21 10:22:00] 2025-11-21 15:21:22,018 | INFO     | left removable region: 10
[2025-11-21 10:22:00] 2025-11-21 15:21:22,020 | INFO     | sum of square deviations: 2483889088356.6387
[2025-11-21 10:22:00] 2025-11-21 15:21:22,117 | INFO     | sum of deviations: 15970289959828.102
[2025-11-21 10:22:00] 2025-11-21 15:21:22,117 | INFO     | mean x: 1763677057.2003999
[2025-11-21 10:22:00] 2025-11-21 15:21:22,117 | INFO     | mean y: 2812230.1169415293
[2025-11-21 10:22:00] 2025-11-21 15:21:22,118 | INFO     | intersect: -11336838212.013655
[2025-11-21 10:22:00] 2025-11-21 15:21:22,120 | INFO     | chi2: 11.80538756649779
[2025-11-21 10:22:00] 2025-11-21 15:21:22,120 | INFO     | current memory leak: 6.43 B/s (using 2001 data points, chi2=11.81)
[2025-11-21 10:22:00] 2025-11-21 15:21:22,122 | INFO     | could have reported an average CPU frequency of 2578 MHz (70 samples)
[2025-11-21 10:22:00] 2025-11-21 15:21:22,122 | INFO     | ..............................
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . Timing measurements:
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . get job = 0 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . initial setup = 9 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . payload setup = 68 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . stage-in = 0 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . payload execution = 123070 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . stage-out = 4 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | . log creation = 1 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,123 | INFO     | ..............................
[2025-11-21 10:22:00] 2025-11-21 15:21:22,357 | INFO     | 
[2025-11-21 10:22:00] 2025-11-21 15:21:22,357 | INFO     | job summary report
[2025-11-21 10:22:00] 2025-11-21 15:21:22,357 | INFO     | --------------------------------------------------
[2025-11-21 10:22:00] 2025-11-21 15:21:22,357 | INFO     | PanDA job id: 6891599164
[2025-11-21 10:22:00] 2025-11-21 15:21:22,357 | INFO     | task id: 47493068
[2025-11-21 10:22:00] 2025-11-21 15:21:22,357 | INFO     | errors: (none)
[2025-11-21 10:22:00] 2025-11-21 15:21:22,357 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | pilot state: finished 
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | transexitcode: 0
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | exeerrorcode: 0
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | exeerrordiag: 
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | exitcode: 0
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | exitmsg: OK
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | cpuconsumptiontime: 347101 s
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | nevents: 1000
[2025-11-21 10:22:00] 2025-11-21 15:21:22,358 | INFO     | neventsw: 0
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | pid: 3602332
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | pgrp: 3602332
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | corecount: 8
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | event service: False
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | sizes: {0: 2296366, 1: 2296967, 2: 2297051, 3: 2297079, 4: 2297278, 5: 2297306, 7: 2297490, 19: 2297518, 31: 2297546, 42: 2297574, 54: 2297630, 56: 2298200, 65: 22
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | --------------------------------------------------
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | 
[2025-11-21 10:22:00] 2025-11-21 15:21:22,359 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-21 10:22:00] 2025-11-21 15:21:22,377 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,408 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,408 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,408 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,408 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,408 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,408 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,408 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,409 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,410 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,410 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 10:22:00] 2025-11-21 15:21:22,410 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,410 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 10:22:00] 2025-11-21 15:21:22,410 | INFO     | job 6891599164 has completed (purged errors)
[2025-11-21 10:22:00] 2025-11-21 15:21:22,410 | INFO     | overall cleanup function is called
[2025-11-21 10:22:00] 2025-11-21 15:21:23,427 | INFO     | --- collectZombieJob: --- 10, [3602332]
[2025-11-21 10:22:00] 2025-11-21 15:21:23,428 | INFO     | zombie collector waiting for pid 3602332
[2025-11-21 10:22:00] 2025-11-21 15:21:23,428 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 10:22:00] 2025-11-21 15:21:23,428 | INFO     | collected zombie processes
[2025-11-21 10:22:00] 2025-11-21 15:21:23,428 | INFO     | will attempt to kill all subprocesses of pid=3602332
[2025-11-21 10:22:00] 2025-11-21 15:21:23,746 | INFO     | process IDs to be killed: [3602332] (in reverse order)
[2025-11-21 10:22:00] 2025-11-21 15:21:23,829 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 10:22:00] 2025-11-21 15:21:23,830 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 10:22:00] 2025-11-21 15:21:23,839 | INFO     | did not find any defunct processes belonging to 3602332
[2025-11-21 10:22:00] 2025-11-21 15:21:23,847 | INFO     | did not find any defunct processes belonging to 3602332
[2025-11-21 10:22:00] 2025-11-21 15:21:23,848 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 10:22:00] 2025-11-21 15:21:23,849 | INFO     | ready for new job
[2025-11-21 10:22:00] 2025-11-21 15:21:23,849 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 10:22:00] 2025-11-21 15:21:23,856 | INFO     | ***************************************
[2025-11-21 10:22:00] 2025-11-21 15:21:23,857 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 10:22:00] 2025-11-21 15:21:23,857 | INFO     | ***************************************
[2025-11-21 10:22:00] 2025-11-21 15:21:23,857 | INFO     | 
[2025-11-21 10:22:00] 2025-11-21 15:21:23,860 | INFO     | architecture information:
[2025-11-21 10:22:00] 2025-11-21 15:21:23,860 | INFO     | executing command: cat /etc/os-release
[2025-11-21 10:22:00] 2025-11-21 15:21:23,874 | INFO     | cat /etc/os-release:
[2025-11-21 10:22:00] NAME="CentOS Linux"
[2025-11-21 10:22:00] VERSION="7 (Core)"
[2025-11-21 10:22:00] ID="centos"
[2025-11-21 10:22:00] ID_LIKE="rhel fedora"
[2025-11-21 10:22:00] VERSION_ID="7"
[2025-11-21 10:22:00] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 10:22:00] ANSI_COLOR="0;31"
[2025-11-21 10:22:00] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 10:22:00] HOME_URL="https://www.centos.org/"
[2025-11-21 10:22:00] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 10:22:00] 
[2025-11-21 10:22:00] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 10:22:00] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 10:22:00] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 10:22:00] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 10:22:00] 
[2025-11-21 10:22:00] 2025-11-21 15:21:23,874 | INFO     | ***************************************
[2025-11-21 10:22:00] 2025-11-21 15:21:24,377 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-21 10:22:00] 2025-11-21 15:21:24,394 | INFO     | sufficient remaining disk space (56876859392 B)
[2025-11-21 10:22:00] 2025-11-21 15:21:24,395 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 10:22:00] 2025-11-21 15:21:24,395 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 10:22:00] 2025-11-21 15:21:24,395 | INFO     | update_server=False
[2025-11-21 10:22:00] 2025-11-21 15:21:24,395 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 10:22:00] 2025-11-21 15:21:24,396 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 10:22:00] 2025-11-21 15:21:24,396 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:22:00] 2025-11-21 15:21:24,396 | INFO     | aborting loop
[2025-11-21 10:22:00] 2025-11-21 15:21:24,841 | INFO     | all payload control threads have been joined
[2025-11-21 10:22:00] 2025-11-21 15:21:24,992 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 10:22:00] 2025-11-21 15:21:25,063 | INFO     | all data control threads have been joined
[2025-11-21 10:22:00] 2025-11-21 15:21:25,204 | INFO     | all job control threads have been joined
[2025-11-21 10:22:00] 2025-11-21 15:21:25,401 | INFO     | [job] retrieve thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:25,401 | INFO     | [job] job monitor thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:25,438 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:25,627 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:25,847 | INFO     | [payload] control thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:25,955 | INFO     | [data] copytool_in thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,069 | INFO     | [data] control thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,125 | INFO     | [payload] failed_post thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,195 | INFO     | [job] validate thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,210 | INFO     | [job] control thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,236 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,544 | INFO     | [payload] validate_post thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,675 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:26,998 | INFO     | [data] copytool_out thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:27,245 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 10:22:00] 2025-11-21 15:21:28,250 | INFO     | [job] queue monitor thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:28,403 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 10:22:00] 2025-11-21 15:21:53,981 | INFO     | PID=3593131 has CPU usage=6.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 10:22:00] 2025-11-21 15:21:53,981 | INFO     | .. there are 11 such processes running
[2025-11-21 10:22:00] 2025-11-21 15:21:53,982 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 10:22:00] 2025-11-21 15:21:53,982 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 10:22:00] 2025-11-21 15:21:53,982 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 10:22:00] 2025-11-21 15:21:54,973 | INFO     | [monitor] cgroup control has ended
[2025-11-21 10:22:00] 2025-11-21 15:21:55,561 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139921937954624)>', '<ExcThread(monitor, started 139921276778240)>']
[2025-11-21 10:22:00] 2025-11-21 15:21:55,992 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 10:22:00] 2025-11-21 15:21:55,992 | INFO     | [monitor] control thread has ended
[2025-11-21 10:22:00] 2025-11-21 15:22:00,567 | INFO     | all workflow threads have been joined
[2025-11-21 10:22:00] 2025-11-21 15:22:00,567 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 10:22:00] 2025-11-21 15:22:00,568 | INFO     | traces error code: 0
[2025-11-21 10:22:00] 2025-11-21 15:22:00,568 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 10:22:00] 2025-11-21 15:22:00,678 [wrapper] ==== pilot stdout END ====
[2025-11-21 10:22:00] 2025-11-21 15:22:00,681 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 10:22:00] 2025-11-21 15:22:00,684 [wrapper] pilotpid: 3593131
[2025-11-21 10:22:00] 2025-11-21 15:22:00,686 [wrapper] Pilot exit status: 0
[2025-11-21 10:22:00] 2025-11-21 15:22:00,695 [wrapper] pandaids: 6891599164
[2025-11-21 10:22:00] 2025-11-21 15:22:00,748 [wrapper] cleanup supervisor_pilot 3297507 3593132
[2025-11-21 10:22:00] 2025-11-21 15:22:00,751 [wrapper] Test setup, not cleaning
[2025-11-21 10:22:00] 2025-11-21 15:22:00,754 [wrapper] apfmon messages muted
[2025-11-21 10:22:00] 2025-11-21 15:22:00,756 [wrapper] ==== wrapper stdout END ====
[2025-11-21 10:22:00] 2025-11-21 15:22:00,758 [wrapper] ==== wrapper stderr END ====
[2025-11-21 10:22:00]  *** Error codes and diagnostics ***
[2025-11-21 10:22:00]     "exeErrorCode": 0,
[2025-11-21 10:22:00]     "exeErrorDiag": "",
[2025-11-21 10:22:00]     "pilotErrorCode": 0,
[2025-11-21 10:22:00]     "pilotErrorDiag": "",
[2025-11-21 10:22:00]  *** Listing of results directory ***
[2025-11-21 10:22:00] total 1347824
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:03 queuedata.json
[2025-11-21 10:22:00] -rwx------. 1 boincer umatlas     36292 Nov 18 14:04 runpilot2-wrapper.sh
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas       100 Nov 20 00:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 10:22:00] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 20 00:04 run_atlas
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas       105 Nov 20 00:04 job.xml
[2025-11-21 10:22:00] -rw-r--r--. 2 boincer umatlas 411750097 Nov 20 00:04 EVNT.47493065._000822.pool.root.1
[2025-11-21 10:22:00] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:04 start_atlas.sh
[2025-11-21 10:22:00] drwxrwx--x. 2 boincer umatlas      4096 Nov 20 00:04 shared
[2025-11-21 10:22:00] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:04 input.tar.gz
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas         0 Nov 20 00:04 boinc_lockfile
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas      2770 Nov 20 00:05 pandaJob.out
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas    989427 Nov 20 00:06 agis_schedconf.cvmfs.json
[2025-11-21 10:22:00] drwx------. 5 boincer umatlas      4096 Nov 20 00:06 pilot3
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas       533 Nov 21 10:09 boinc_task_state.xml
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas 930137104 Nov 21 10:20 HITS.47493068._006861.pool.root.1
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas      1060 Nov 21 10:21 memory_monitor_summary.json
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas   1526164 Nov 21 10:21 agis_ddmendpoints.agis.ALL.json
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas   2783111 Nov 21 10:21 log.47493068._006861.job.log.tgz.1
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas      8625 Nov 21 10:21 heartbeat.json
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas      6616 Nov 21 10:21 init_data.xml
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas        95 Nov 21 10:21 pilot_heartbeat.json
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas        29 Nov 21 10:21 wrapper_checkpoint.txt
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas      4824 Nov 21 10:22 pilotlog.txt
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas  14398831 Nov 21 10:22 log.47493068._006861.job.log.1
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas       353 Nov 21 10:22 output.list
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas       620 Nov 21 10:22 runtime_log
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas      8192 Nov 21 10:22 boinc_mmap_file
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas  17203200 Nov 21 10:22 result.tar.gz
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas       662 Nov 21 10:22 zixNDmSBgf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDm0kFKDmcsf1qn.diag
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas      8700 Nov 21 10:22 runtime_log.err
[2025-11-21 10:22:00] -rw-r--r--. 1 boincer umatlas     21891 Nov 21 10:22 stderr.txt
[2025-11-21 10:22:00] HITS file was successfully produced:
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas 930137104 Nov 21 10:20 shared/HITS.pool.root.1
[2025-11-21 10:22:00]  *** Contents of shared directory: ***
[2025-11-21 10:22:00] total 1327840
[2025-11-21 10:22:00] -rw-r--r--. 2 boincer umatlas 411750097 Nov 20 00:04 ATLAS.root_0
[2025-11-21 10:22:00] -rw-r--r--. 2 boincer umatlas     15120 Nov 20 00:04 start_atlas.sh
[2025-11-21 10:22:00] -rw-r--r--. 2 boincer umatlas    590098 Nov 20 00:04 input.tar.gz
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas 930137104 Nov 21 10:20 HITS.pool.root.1
[2025-11-21 10:22:00] -rw-------. 1 boincer umatlas  17203200 Nov 21 10:22 result.tar.gz
10:22:01 (3587622): run_atlas exited; CPU time 350325.157708
10:22:01 (3587622): called boinc_finish(0)

</stderr_txt>
]]>

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