Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
22:43:19 (1754824): wrapper (7.7.26015): starting
22:43:19 (1754824): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 22:43:19] Arguments: --nthreads 8
[2025-11-19 22:43:19] Threads: 8
[2025-11-19 22:43:19] Checking for CVMFS
[2025-11-19 22:43:19] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 22:43:19] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 22:43:19] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 22:43:20] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 22:43:20] 2.13.3.0 12359 20887 337104 153067 0 111 32918995 32935937 26050 16776704 0 139955710 99.654 119957804 32292 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-19 22:43:20] CVMFS is ok
[2025-11-19 22:43:20] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 22:43:20] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 22:43:20] Further information can be found at the LHC@home message board.
[2025-11-19 22:43:20] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 22:43:20] Checking for apptainer binary...
[2025-11-19 22:43:20] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 22:43:20] Running /usr/bin/apptainer --version
[2025-11-19 22:43:20] apptainer version 1.4.4-1.el9
[2025-11-19 22:43:20] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 22:43:20] c6-12-29-3.aglt2.org
[2025-11-19 22:43:20] apptainer works
[2025-11-19 22:43:20] Set ATHENA_PROC_NUMBER=8
[2025-11-19 22:43:20] Set ATHENA_CORE_NUMBER=8
[2025-11-19 22:43:20] Starting ATLAS job with PandaID=6891597533
[2025-11-19 22:43:20] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:52:08]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:52:08] 2025-11-21 00:50:58,871 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:52:08] 2025-11-21 00:50:59,101 | INFO     | time since job start (76034s) is within the limit (172800.0s)
[2025-11-20 19:52:08] 2025-11-21 00:51:01,109 | INFO     | time since job start (76036s) is within the limit (172800.0s)
[2025-11-20 19:52:08] 2025-11-21 00:51:01,376 | INFO     | monitor loop #4448: job 0:6891597533 is in state 'finished'
[2025-11-20 19:52:08] 2025-11-21 00:51:01,376 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:52:08] 2025-11-21 00:51:03,122 | INFO     | time since job start (76038s) is within the limit (172800.0s)
[2025-11-20 19:52:08] 2025-11-21 00:51:03,883 | INFO     | monitor loop #4449: job 0:6891597533 is in state 'finished'
[2025-11-20 19:52:08] 2025-11-21 00:51:03,883 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:52:08] 2025-11-21 00:51:05,129 | INFO     | time since job start (76040s) is within the limit (172800.0s)
[2025-11-20 19:52:08] 2025-11-21 00:51:06,401 | INFO     | monitor loop #4450: job 0:6891597533 is in state 'finished'
[2025-11-20 19:52:08] 2025-11-21 00:51:06,401 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:52:08] 2025-11-21 00:51:07,560 | INFO     | PID=1758530 has CPU usage=3.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 19:52:08] 2025-11-21 00:51:07,560 | INFO     | .. there are 32 such processes running
[2025-11-20 19:52:08] 2025-11-21 00:51:08,562 | INFO     | time since job start (76043s) is within the limit (172800.0s)
[2025-11-20 19:52:08] 2025-11-21 00:51:08,928 | INFO     | monitor loop #4451: job 0:6891597533 is in state 'finished'
[2025-11-20 19:52:08] 2025-11-21 00:51:08,928 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 19:52:08] 2025-11-21 00:51:10,569 | INFO     | time since job start (76045s) is within the limit (172800.0s)
[2025-11-20 19:52:08] 2025-11-21 00:51:10,596 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 19:52:08] 2025-11-21 00:51:10,631 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2513.497635416667
[2025-11-20 19:52:08] 2025-11-21 00:51:10,696 | INFO     | using path: /tmp/boinchome/slots/1/PanDA_Pilot-6891597533/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 19:52:08] 2025-11-21 00:51:10,697 | INFO     | extracted standard info from prmon json
[2025-11-20 19:52:08] 2025-11-21 00:51:10,697 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 19:52:08] 2025-11-21 00:51:10,697 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 19:52:08] 2025-11-21 00:51:10,753 | INFO     | fitting pss+swap vs Time
[2025-11-20 19:52:08] 2025-11-21 00:51:10,755 | INFO     | sum of square deviations: 598422499584.7034
[2025-11-20 19:52:08] 2025-11-21 00:51:10,821 | INFO     | sum of deviations: 2413890326810.666
[2025-11-20 19:52:08] 2025-11-21 00:51:10,822 | INFO     | mean x: 1763648233.3108435
[2025-11-20 19:52:08] 2025-11-21 00:51:10,826 | INFO     | mean y: 2924845.2618473894
[2025-11-20 19:52:08] 2025-11-21 00:51:10,826 | INFO     | intersect: -7111201734.604783
[2025-11-20 19:52:08] 2025-11-21 00:51:10,828 | INFO     | chi2: 13.770545932767472
[2025-11-20 19:52:08] 2025-11-21 00:51:10,834 | INFO     | sum of square deviations: 591242664263.5348
[2025-11-20 19:52:08] 2025-11-21 00:51:10,897 | INFO     | sum of deviations: 2843539493061.802
[2025-11-20 19:52:08] 2025-11-21 00:51:10,898 | INFO     | mean x: 1763648080.8193548
[2025-11-20 19:52:08] 2025-11-21 00:51:10,906 | INFO     | mean y: 2933969.075
[2025-11-20 19:52:08] 2025-11-21 00:51:10,906 | INFO     | intersect: -8479205891.246631
[2025-11-20 19:52:08] 2025-11-21 00:51:10,908 | INFO     | chi2: 10.424037276006015
[2025-11-20 19:52:08] 2025-11-21 00:51:10,908 | INFO     | current chi2=10.424037276006015 (change=24.301931623482908 %)
[2025-11-20 19:52:08] 2025-11-21 00:51:10,908 | INFO     | right removable region: 1239
[2025-11-20 19:52:08] 2025-11-21 00:51:10,918 | INFO     | sum of square deviations: 591240985112.896
[2025-11-20 19:52:08] 2025-11-21 00:51:11,052 | INFO     | sum of deviations: 2058488227397.7278
[2025-11-20 19:52:08] 2025-11-21 00:51:11,059 | INFO     | mean x: 1763648385.8201613
[2025-11-20 19:52:08] 2025-11-21 00:51:11,059 | INFO     | mean y: 2932386.1467741937
[2025-11-20 19:52:08] 2025-11-21 00:51:11,060 | INFO     | intersect: -6137456272.441539
[2025-11-20 19:52:08] 2025-11-21 00:51:11,061 | INFO     | chi2: 11.567369796248476
[2025-11-20 19:52:08] 2025-11-21 00:51:11,062 | INFO     | current chi2=11.567369796248476 (change=15.999192386966046 %)
[2025-11-20 19:52:08] 2025-11-21 00:51:11,062 | INFO     | left removable region: 10
[2025-11-20 19:52:08] 2025-11-21 00:51:11,068 | INFO     | sum of square deviations: 575646977097.2223
[2025-11-20 19:52:08] 2025-11-21 00:51:11,147 | INFO     | sum of deviations: 2469568161571.9795
[2025-11-20 19:52:08] 2025-11-21 00:51:11,148 | INFO     | mean x: 1763648355.3336046
[2025-11-20 19:52:08] 2025-11-21 00:51:11,148 | INFO     | mean y: 2945625.04637917
[2025-11-20 19:52:08] 2025-11-21 00:51:11,148 | INFO     | intersect: -7563236427.196125
[2025-11-20 19:52:08] 2025-11-21 00:51:11,154 | INFO     | chi2: 7.4800458302342365
[2025-11-20 19:52:08] 2025-11-21 00:51:11,155 | INFO     | current memory leak: 4.29 B/s (using 1229 data points, chi2=7.48)
[2025-11-20 19:52:08] 2025-11-21 00:51:11,156 | INFO     | could have reported an average CPU frequency of 2559 MHz (45 samples)
[2025-11-20 19:52:08] 2025-11-21 00:51:11,157 | INFO     | ..............................
[2025-11-20 19:52:08] 2025-11-21 00:51:11,157 | INFO     | . Timing measurements:
[2025-11-20 19:52:08] 2025-11-21 00:51:11,157 | INFO     | . get job = 0 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,157 | INFO     | . initial setup = 3 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,157 | INFO     | . payload setup = 16 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,157 | INFO     | . stage-in = 0 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,158 | INFO     | . payload execution = 75944 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,158 | INFO     | . stage-out = 7 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,158 | INFO     | . log creation = 1 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,158 | INFO     | ..............................
[2025-11-20 19:52:08] 2025-11-21 00:51:11,589 | INFO     | 
[2025-11-20 19:52:08] 2025-11-21 00:51:11,589 | INFO     | job summary report
[2025-11-20 19:52:08] 2025-11-21 00:51:11,589 | INFO     | --------------------------------------------------
[2025-11-20 19:52:08] 2025-11-21 00:51:11,589 | INFO     | PanDA job id: 6891597533
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | task id: 47493068
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | errors: (none)
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | pilot state: finished 
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | transexitcode: 0
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | exeerrorcode: 0
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | exeerrordiag: 
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | exitcode: 0
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | exitmsg: OK
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | cpuconsumptiontime: 281848 s
[2025-11-20 19:52:08] 2025-11-21 00:51:11,590 | INFO     | nevents: 1000
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | neventsw: 0
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | pid: 1766119
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | pgrp: 1766119
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | corecount: 8
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | event service: False
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | sizes: {0: 2297199, 1: 2297199, 12: 2297227, 14: 2297517, 23: 2297545, 75965: 2356038, 75973: 2366684, 76010: 2366874}
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | --------------------------------------------------
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | 
[2025-11-20 19:52:08] 2025-11-21 00:51:11,591 | INFO     | executing command: ls -lF /tmp/boinchome/slots/1
[2025-11-20 19:52:08] 2025-11-21 00:51:11,669 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,669 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,669 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,669 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,670 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,671 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 19:52:08] 2025-11-21 00:51:11,671 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,671 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 19:52:08] 2025-11-21 00:51:11,671 | INFO     | job 6891597533 has completed (purged errors)
[2025-11-20 19:52:08] 2025-11-21 00:51:11,671 | INFO     | overall cleanup function is called
[2025-11-20 19:52:08] 2025-11-21 00:51:12,689 | INFO     | --- collectZombieJob: --- 10, [1766119]
[2025-11-20 19:52:08] 2025-11-21 00:51:12,689 | INFO     | zombie collector waiting for pid 1766119
[2025-11-20 19:52:08] 2025-11-21 00:51:12,689 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 19:52:08] 2025-11-21 00:51:12,689 | INFO     | collected zombie processes
[2025-11-20 19:52:08] 2025-11-21 00:51:12,689 | INFO     | will attempt to kill all subprocesses of pid=1766119
[2025-11-20 19:52:08] 2025-11-21 00:51:13,804 | INFO     | process IDs to be killed: [1766119] (in reverse order)
[2025-11-20 19:52:08] 2025-11-21 00:51:14,137 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 19:52:08] 2025-11-21 00:51:14,137 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 19:52:08] 2025-11-21 00:51:14,177 | INFO     | did not find any defunct processes belonging to 1766119
[2025-11-20 19:52:08] 2025-11-21 00:51:14,216 | INFO     | did not find any defunct processes belonging to 1766119
[2025-11-20 19:52:08] 2025-11-21 00:51:14,218 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 19:52:08] 2025-11-21 00:51:14,218 | INFO     | ready for new job
[2025-11-20 19:52:08] 2025-11-21 00:51:14,218 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 19:52:08] 2025-11-21 00:51:14,233 | INFO     | ***************************************
[2025-11-20 19:52:08] 2025-11-21 00:51:14,235 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 19:52:08] 2025-11-21 00:51:14,236 | INFO     | ***************************************
[2025-11-20 19:52:08] 2025-11-21 00:51:14,236 | INFO     | 
[2025-11-20 19:52:08] 2025-11-21 00:51:14,250 | INFO     | architecture information:
[2025-11-20 19:52:08] 2025-11-21 00:51:14,258 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:52:08] 2025-11-21 00:51:14,306 | INFO     | cat /etc/os-release:
[2025-11-20 19:52:08] NAME="CentOS Linux"
[2025-11-20 19:52:08] VERSION="7 (Core)"
[2025-11-20 19:52:08] ID="centos"
[2025-11-20 19:52:08] ID_LIKE="rhel fedora"
[2025-11-20 19:52:08] VERSION_ID="7"
[2025-11-20 19:52:08] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:52:08] ANSI_COLOR="0;31"
[2025-11-20 19:52:08] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:52:08] HOME_URL="https://www.centos.org/"
[2025-11-20 19:52:08] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:52:08] 
[2025-11-20 19:52:08] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:52:08] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:52:08] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:52:08] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:52:08] 
[2025-11-20 19:52:08] 2025-11-21 00:51:14,307 | INFO     | ***************************************
[2025-11-20 19:52:08] 2025-11-21 00:51:14,810 | INFO     | executing command: df -mP /tmp/boinchome/slots/1
[2025-11-20 19:52:08] 2025-11-21 00:51:14,887 | INFO     | sufficient remaining disk space (90322239488 B)
[2025-11-20 19:52:08] 2025-11-21 00:51:14,888 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:52:08] 2025-11-21 00:51:14,888 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:52:08] 2025-11-21 00:51:14,888 | INFO     | update_server=False
[2025-11-20 19:52:08] 2025-11-21 00:51:14,888 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:52:08] 2025-11-21 00:51:15,139 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:52:08] 2025-11-21 00:51:15,139 | INFO     | aborting loop
[2025-11-20 19:52:08] 2025-11-21 00:51:15,326 | INFO     | all payload control threads have been joined
[2025-11-20 19:52:08] 2025-11-21 00:51:15,374 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:52:08] 2025-11-21 00:51:15,751 | INFO     | all data control threads have been joined
[2025-11-20 19:52:08] 2025-11-21 00:51:15,894 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,078 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,156 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,156 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,217 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,293 | INFO     | all job control threads have been joined
[2025-11-20 19:52:08] 2025-11-21 00:51:16,332 | INFO     | [payload] control thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,379 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:52:08] 2025-11-21 00:51:16,549 | INFO     | [job] validate thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,624 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,758 | INFO     | [data] control thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,767 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:16,937 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:17,299 | INFO     | [job] control thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:17,340 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:17,369 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:52:08] 2025-11-21 00:51:17,381 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:17,398 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:21,384 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:52:08] 2025-11-21 00:51:45,409 | INFO     | PID=1758530 has CPU usage=4.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 19:52:08] 2025-11-21 00:51:45,411 | INFO     | .. there are 32 such processes running
[2025-11-20 19:52:08] 2025-11-21 00:51:45,412 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:52:08] 2025-11-21 00:51:45,412 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:52:08] 2025-11-21 00:51:45,412 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:52:08] 2025-11-21 00:52:00,516 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:52:08] 2025-11-21 00:52:01,786 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139931914254144)>', '<ExcThread(monitor, started 139931041134336)>']
[2025-11-20 19:52:08] 2025-11-21 00:52:02,539 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:52:08] 2025-11-21 00:52:02,539 | INFO     | [monitor] control thread has ended
[2025-11-20 19:52:08] 2025-11-21 00:52:06,819 | INFO     | all workflow threads have been joined
[2025-11-20 19:52:08] 2025-11-21 00:52:06,819 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:52:08] 2025-11-21 00:52:06,820 | INFO     | traces error code: 0
[2025-11-20 19:52:08] 2025-11-21 00:52:06,820 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:52:08] 2025-11-21 00:52:07,270 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:52:08] 2025-11-21 00:52:07,281 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:52:08] 2025-11-21 00:52:07,299 [wrapper] pilotpid: 1758530
[2025-11-20 19:52:08] 2025-11-21 00:52:07,314 [wrapper] Pilot exit status: 0
[2025-11-20 19:52:08] 2025-11-21 00:52:07,381 [wrapper] pandaids: 6891597533
[2025-11-20 19:52:08] 2025-11-21 00:52:07,723 [wrapper] cleanup supervisor_pilot 1372634 1758531
[2025-11-20 19:52:08] 2025-11-21 00:52:07,762 [wrapper] Test setup, not cleaning
[2025-11-20 19:52:08] 2025-11-21 00:52:07,783 [wrapper] apfmon messages muted
[2025-11-20 19:52:08] 2025-11-21 00:52:07,803 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:52:08] 2025-11-21 00:52:07,829 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:52:08]  *** Error codes and diagnostics ***
[2025-11-20 19:52:08]     "exeErrorCode": 0,
[2025-11-20 19:52:08]     "exeErrorDiag": "",
[2025-11-20 19:52:08]     "pilotErrorCode": 0,
[2025-11-20 19:52:08]     "pilotErrorDiag": "",
[2025-11-20 19:52:08]  *** Listing of results directory ***
[2025-11-20 19:52:08] total 1331240
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 13:52 queuedata.json
[2025-11-20 19:52:08] -rwx------. 1 boincer umatlas     36292 Nov 18 13:53 runpilot2-wrapper.sh
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas       100 Nov 19 22:43 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:52:08] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 22:43 run_atlas
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas       105 Nov 19 22:43 job.xml
[2025-11-20 19:52:08] -rw-r--r--. 2 boincer umatlas 408857481 Nov 19 22:43 EVNT.47493065._000800.pool.root.1
[2025-11-20 19:52:08] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 22:43 shared
[2025-11-20 19:52:08] -rw-r--r--. 2 boincer umatlas    590100 Nov 19 22:43 input.tar.gz
[2025-11-20 19:52:08] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 22:43 start_atlas.sh
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas         0 Nov 19 22:43 boinc_lockfile
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas      2772 Nov 19 22:43 pandaJob.out
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas    989427 Nov 19 22:43 agis_schedconf.cvmfs.json
[2025-11-20 19:52:08] drwx------. 5 boincer umatlas      4096 Nov 19 22:43 pilot3
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas       533 Nov 20 19:25 boinc_task_state.xml
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas      6878 Nov 20 19:45 init_data.xml
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas 926944003 Nov 20 19:49 HITS.47493068._006648.pool.root.1
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas      1058 Nov 20 19:50 memory_monitor_summary.json
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas   1526164 Nov 20 19:50 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas   2308102 Nov 20 19:50 log.47493068._006648.job.log.tgz.1
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas        95 Nov 20 19:51 pilot_heartbeat.json
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas      7955 Nov 20 19:51 heartbeat.json
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas        29 Nov 20 19:52 wrapper_checkpoint.txt
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas      4824 Nov 20 19:52 pilotlog.txt
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas   9428386 Nov 20 19:52 log.47493068._006648.job.log.1
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 19:52 boinc_mmap_file
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas       353 Nov 20 19:52 output.list
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas       620 Nov 20 19:52 runtime_log
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas  11755520 Nov 20 19:52 result.tar.gz
[2025-11-20 19:52:08] -rw-------. 1 boincer umatlas       662 Nov 20 19:52 YCTLDmR0ff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmfjFKDmsyqJYo.diag
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas      8714 Nov 20 19:52 runtime_log.err
[2025-11-20 19:52:08] -rw-r--r--. 1 boincer umatlas     21850 Nov 20 19:52 stderr.txt
[2025-11-20 19:52:28] HITS file was successfully produced:
[2025-11-20 19:52:28] -rw-------. 1 boincer umatlas 926944003 Nov 20 19:49 shared/HITS.pool.root.1
[2025-11-20 19:52:28]  *** Contents of shared directory: ***
[2025-11-20 19:52:28] total 1316580
[2025-11-20 19:52:28] -rw-r--r--. 2 boincer umatlas 408857481 Nov 19 22:43 ATLAS.root_0
[2025-11-20 19:52:28] -rw-r--r--. 2 boincer umatlas    590100 Nov 19 22:43 input.tar.gz
[2025-11-20 19:52:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 22:43 start_atlas.sh
[2025-11-20 19:52:28] -rw-------. 1 boincer umatlas 926944003 Nov 20 19:49 HITS.pool.root.1
[2025-11-20 19:52:28] -rw-------. 1 boincer umatlas  11755520 Nov 20 19:52 result.tar.gz
19:52:30 (1754824): run_atlas exited; CPU time 284385.838987
19:52:30 (1754824): called boinc_finish(0)

</stderr_txt>
]]>

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