Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
06:05:48 (2906249): wrapper (7.7.26015): starting
06:05:48 (2906249): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 06:05:48] Arguments: --nthreads 3
[2025-11-19 06:05:48] Threads: 3
[2025-11-19 06:05:48] Checking for CVMFS
[2025-11-19 06:05:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 06:05:49] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 06:05:49] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 06:05:49] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 06:05:49] 2.9.2.0 4099368 647 74580 153030 3 88 34217058 36864000 0 130560 0 9019437 99.984 157251 3792 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 06:05:49] CVMFS is ok
[2025-11-19 06:05:49] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 06:05:49] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 06:05:49] Further information can be found at the LHC@home message board.
[2025-11-19 06:05:49] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 06:05:49] Checking for apptainer binary...
[2025-11-19 06:05:49] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 06:05:49] Running /usr/bin/apptainer --version
[2025-11-19 06:05:49] apptainer version 1.4.1-1.1
[2025-11-19 06:05:49] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 06:05:49] thA335
[2025-11-19 06:05:49] apptainer works
[2025-11-19 06:05:49] Set ATHENA_PROC_NUMBER=3
[2025-11-19 06:05:49] Set ATHENA_CORE_NUMBER=3
[2025-11-19 06:05:49] Starting ATLAS job with PandaID=6891561000
[2025-11-19 06:05:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 06:10:08]  *** The last 200 lines of the pilot log: ***
[2025-11-19 06:10:08] 2025-11-19 05:09:20,553 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 06:10:08] 2025-11-19 05:09:20,553 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 06:10:08] 2025-11-19 05:09:20,553 | INFO     | update_server=False
[2025-11-19 06:10:08] 2025-11-19 05:09:20,553 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 06:10:08] 2025-11-19 05:09:20,553 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 06:10:08] 2025-11-19 05:09:20,553 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 06:10:08] 2025-11-19 05:09:20,553 | INFO     | aborting loop
[2025-11-19 06:10:08] 2025-11-19 05:09:21,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 06:10:08] 2025-11-19 05:09:21,231 | INFO     | all job control threads have been joined
[2025-11-19 06:10:08] 2025-11-19 05:09:21,363 | INFO     | all data control threads have been joined
[2025-11-19 06:10:08] 2025-11-19 05:09:21,559 | INFO     | [job] retrieve thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:21,560 | INFO     | [job] queue monitor thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:21,561 | INFO     | [job] job monitor thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:21,680 | INFO     | [data] copytool_in thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:21,777 | INFO     | all payload control threads have been joined
[2025-11-19 06:10:08] 2025-11-19 05:09:21,918 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,119 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,238 | INFO     | [job] control thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,367 | INFO     | [data] control thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,591 | INFO     | [payload] failed_post thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,679 | INFO     | [payload] validate_post thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,769 | INFO     | [job] validate thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,783 | INFO     | [payload] control thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,873 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:22,929 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:23,126 | INFO     | [data] copytool_out thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:23,430 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 06:10:08] 2025-11-19 05:09:27,438 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 06:10:08] 2025-11-19 05:09:50,437 | INFO     | PID=2909970 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 06:10:08] 2025-11-19 05:09:50,437 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 06:10:08] 2025-11-19 05:09:50,437 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 06:10:08] 2025-11-19 05:09:50,437 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 06:10:08] 2025-11-19 05:10:01,549 | INFO     | [monitor] cgroup control has ended
[2025-11-19 06:10:08] 2025-11-19 05:10:03,273 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140375123810112)>', '<ExcThread(monitor, started 140374471329536)>']
[2025-11-19 06:10:08] 2025-11-19 05:10:03,505 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 06:10:08] 2025-11-19 05:10:03,506 | INFO     | [monitor] control thread has ended
[2025-11-19 06:10:08] 2025-11-19 05:10:08,299 | INFO     | all workflow threads have been joined
[2025-11-19 06:10:08] 2025-11-19 05:10:08,300 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 06:10:08] 2025-11-19 05:10:08,301 | INFO     | traces error code: 0
[2025-11-19 06:10:08] 2025-11-19 05:10:08,301 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 06:10:08] 2025-11-19 05:10:08,364 [wrapper] ==== pilot stdout END ====
[2025-11-19 06:10:08] 2025-11-19 05:10:08,367 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 06:10:08] 2025-11-19 05:10:08,370 [wrapper] pilotpid: 2909970
[2025-11-19 06:10:08] 2025-11-19 05:10:08,373 [wrapper] Pilot exit status: 0
[2025-11-19 06:10:08] 2025-11-19 05:10:08,380 [wrapper] pandaids: 6891561000
[2025-11-19 06:10:08] 2025-11-19 05:10:08,399 [wrapper] cleanup supervisor_pilot 2909976 2909971
[2025-11-19 06:10:08] 2025-11-19 05:10:08,402 [wrapper] Test setup, not cleaning
[2025-11-19 06:10:08] 2025-11-19 05:10:08,405 [wrapper] apfmon messages muted
[2025-11-19 06:10:08] 2025-11-19 05:10:08,408 [wrapper] ==== wrapper stdout END ====
[2025-11-19 06:10:08] 2025-11-19 05:10:08,411 [wrapper] ==== wrapper stderr END ====
[2025-11-19 06:10:08]  *** Error codes and diagnostics ***
[2025-11-19 06:10:08]     "exeErrorCode": 65,
[2025-11-19 06:10:08]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 06:10:08]     "pilotErrorCode": 1305,
[2025-11-19 06:10:08]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 06:10:08]  *** Listing of results directory ***
[2025-11-19 06:10:08] total 404524
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-19 06:10:08] -rwx------ 1 boinc boinc     36292 Nov 18 16:26 runpilot2-wrapper.sh
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc       100 Nov 19 06:05 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 06:10:08] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 06:05 run_atlas
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc       105 Nov 19 06:05 job.xml
[2025-11-19 06:10:08] -rw-r--r-- 2 boinc boinc 410035374 Nov 19 06:05 EVNT.47493065._000082.pool.root.1
[2025-11-19 06:10:08] drwxrwx--x 2 boinc boinc      4096 Nov 19 06:05 shared
[2025-11-19 06:10:08] -rw-r--r-- 2 boinc boinc    590104 Nov 19 06:05 input.tar.gz
[2025-11-19 06:10:08] -rw-r--r-- 2 boinc boinc     15120 Nov 19 06:05 start_atlas.sh
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc         0 Nov 19 06:05 boinc_setup_complete
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc      6194 Nov 19 06:05 init_data.xml
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc         0 Nov 19 06:05 boinc_lockfile
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc      2771 Nov 19 06:05 pandaJob.out
[2025-11-19 06:10:08] -rw------- 1 boinc boinc    992806 Nov 19 06:06 agis_schedconf.cvmfs.json
[2025-11-19 06:10:08] -rw------- 1 boinc boinc   1525063 Nov 19 06:06 agis_ddmendpoints.agis.ALL.json
[2025-11-19 06:10:08] drwx------ 5 boinc boinc      4096 Nov 19 06:06 pilot3
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc       523 Nov 19 06:06 boinc_task_state.xml
[2025-11-19 06:10:08] -rw------- 1 boinc boinc       967 Nov 19 06:07 memory_monitor_summary.json
[2025-11-19 06:10:08] -rw------- 1 boinc boinc     55726 Nov 19 06:07 log.47493068._000813.job.log.tgz.1
[2025-11-19 06:10:08] -rw------- 1 boinc boinc        95 Nov 19 06:09 pilot_heartbeat.json
[2025-11-19 06:10:08] -rw------- 1 boinc boinc      8409 Nov 19 06:09 heartbeat.json
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc      8192 Nov 19 06:09 boinc_mmap_file
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc        23 Nov 19 06:09 wrapper_checkpoint.txt
[2025-11-19 06:10:08] -rw------- 1 boinc boinc      4752 Nov 19 06:10 pilotlog.txt
[2025-11-19 06:10:08] -rw------- 1 boinc boinc     93644 Nov 19 06:10 log.47493068._000813.job.log.1
[2025-11-19 06:10:08] -rw------- 1 boinc boinc       186 Nov 19 06:10 output.list
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc       620 Nov 19 06:10 runtime_log
[2025-11-19 06:10:08] -rw------- 1 boinc boinc    163840 Nov 19 06:10 result.tar.gz
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc      8624 Nov 19 06:10 runtime_log.err
[2025-11-19 06:10:08] -rw------- 1 boinc boinc       649 Nov 19 06:10 Q4eMDmSmcf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm8NFKDmgXKEGo.diag
[2025-11-19 06:10:08] -rw-r--r-- 1 boinc boinc      8019 Nov 19 06:10 stderr.txt
[2025-11-19 06:10:08] No HITS result produced
[2025-11-19 06:10:08]  *** Contents of shared directory: ***
[2025-11-19 06:10:08] total 401188
[2025-11-19 06:10:08] -rw-r--r-- 2 boinc boinc 410035374 Nov 19 06:05 ATLAS.root_0
[2025-11-19 06:10:08] -rw-r--r-- 2 boinc boinc    590104 Nov 19 06:05 input.tar.gz
[2025-11-19 06:10:08] -rw-r--r-- 2 boinc boinc     15120 Nov 19 06:05 start_atlas.sh
[2025-11-19 06:10:08] -rw------- 1 boinc boinc    163840 Nov 19 06:10 result.tar.gz
06:10:09 (2906249): run_atlas exited; CPU time 32.346352
06:10:09 (2906249): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN