Stderr output

<core_client_version>8.2.5</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-19 22:26:04 (59865): vboxwrapper version 26210
2025-11-19 22:26:04 (59865): BOINC client version: 8.2.5
2025-11-19 22:26:05 (59865): Detected: VirtualBox VboxManage Interface (Version: 7.1.12)
2025-11-19 22:26:05 (59865): Detected: Sandbox Configuration Enabled
2025-11-19 22:26:05 (59865): Successfully copied 'init_data.xml' to the shared directory.
2025-11-19 22:26:05 (59865): Create VM. (boinc_2bbc601b665c9fad, slot#4)
2025-11-19 22:26:05 (59865): Setting Memory Size for VM. (4600MB)
2025-11-19 22:26:05 (59865): Setting CPU Count for VM. (6)
2025-11-19 22:26:05 (59865): Setting Chipset Options for VM.
2025-11-19 22:26:05 (59865): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-19 22:26:05 (59865): Setting Boot Options for VM.
2025-11-19 22:26:05 (59865): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-19 22:26:05 (59865): Enabling VM Network Access.
2025-11-19 22:26:05 (59865): Disabling USB Support for VM.
2025-11-19 22:26:05 (59865): Disabling COM Port Support for VM.
2025-11-19 22:26:05 (59865): Disabling Audio Support for VM.
2025-11-19 22:26:05 (59865): Disabling Clipboard Support for VM.
2025-11-19 22:26:05 (59865): Disabling Drag and Drop Support for VM.
2025-11-19 22:26:05 (59865): Adding storage controller(s) to VM.
2025-11-19 22:26:05 (59865): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-19 22:26:05 (59865): Adding VirtualBox Guest Additions to VM.
2025-11-19 22:26:06 (59865): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-19 22:26:06 (59865): forwarding host port 61325 to guest port 80
2025-11-19 22:26:06 (59865): Enabling remote desktop for VM.
2025-11-19 22:26:06 (59865): Required extension pack not installed, remote desktop not enabled.
2025-11-19 22:26:06 (59865): Enabling shared directory for VM.
2025-11-19 22:26:06 (59865): Starting VM using VBoxManage interface. (boinc_2bbc601b665c9fad, slot#4)
2025-11-19 22:26:09 (59865): Successfully started VM. (PID = '59938')
2025-11-19 22:26:09 (59865): Reporting VM Process ID to BOINC.
2025-11-19 22:26:09 (59865): Guest Log: BIOS: VirtualBox 7.1.12
2025-11-19 22:26:09 (59865): Guest Log: CPUID EDX: 0x178bfbff
2025-11-19 22:26:09 (59865): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-19 22:26:09 (59865): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-19 22:26:09 (59865): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-19 22:26:09 (59865): Detected: Web Application Enabled (http://localhost:61325)
2025-11-19 22:26:09 (59865): Preference change detected
2025-11-19 22:26:09 (59865): Setting CPU throttle for VM. (75%)
2025-11-19 22:26:09 (59865): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-19 22:26:11 (59865): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-19 22:26:11 (59865): Guest Log: BIOS: Booting from Hard Disk...
2025-11-19 22:26:14 (59865): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-19 22:26:14 (59865): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-19 22:26:14 (59865): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-19 22:26:20 (59865): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-19 22:26:20 (59865): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0400000 (size 0x400000)
2025-11-19 22:26:26 (59865): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.000130 main     Log opened 2025-11-19T21:26:24.845118000Z
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.000223 main     OS Product: Linux
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.000264 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.000300 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.000338 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.000339 main     Process ID: 1344
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.000340 main     Package type: LINUX_64BITS_GENERIC
2025-11-19 22:26:26 (59865): Guest Log: 00:00:00.001404 main     5.2.32 r132073 started. Verbose level = 0
2025-11-19 22:26:27 (59865): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-19 22:26:27 (59865): Guest Log: [INFO] Mounting shared directory
2025-11-19 22:26:27 (59865): Guest Log: [INFO] Checking for init_data.xml
2025-11-19 22:26:30 (59865): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-19 22:26:30 (59865): Guest Log: [INFO] Detected branch: prod
2025-11-19 22:26:30 (59865): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-19 22:26:30 (59865): Guest Log: Copying input files
2025-11-19 22:26:35 (59865): Guest Log: Copied input files into RunAtlas.
2025-11-19 22:26:35 (59865): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-19 22:26:35 (59865): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-19 22:26:35 (59865): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-19 22:26:35 (59865): Guest Log: Further information can be found at the LHC@home message board.
2025-11-19 22:26:43 (59865): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-19 22:26:43 (59865): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-19 22:26:43 (59865): Guest Log: 2.6.3.0 1620 0 30152 153057 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1cern-cvmfs.openhtc.io/cvmfs/atlas.cern.ch DIRECT 1
2025-11-19 22:26:44 (59865): Guest Log: copied the webapp to /var/www
2025-11-19 22:26:44 (59865): Guest Log: ATHENA_PROC_NUMBER=6
2025-11-19 22:26:44 (59865): Guest Log: ATHENA_CORE_NUMBER=6
2025-11-19 22:26:44 (59865): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-19 22:26:44 (59865): Guest Log:  *** Starting ATLAS job. (PandaID=6891601287 taskID=47493068) ***
2025-11-20 00:05:38 (59865): Status Report: Elapsed Time: '6000.000000'
2025-11-20 00:05:38 (59865): Status Report: CPU Time: '27285.960000'
2025-11-20 01:45:06 (59865): Status Report: Elapsed Time: '12000.000000'
2025-11-20 01:45:06 (59865): Status Report: CPU Time: '56522.030000'
2025-11-20 03:24:35 (59865): Status Report: Elapsed Time: '18000.000000'
2025-11-20 03:24:35 (59865): Status Report: CPU Time: '85819.670000'
2025-11-20 05:04:03 (59865): Status Report: Elapsed Time: '24000.000000'
2025-11-20 05:04:03 (59865): Status Report: CPU Time: '115100.550000'
2025-11-20 06:43:30 (59865): Status Report: Elapsed Time: '30000.000000'
2025-11-20 06:43:30 (59865): Status Report: CPU Time: '144378.610000'
2025-11-20 08:22:59 (59865): Status Report: Elapsed Time: '36000.000000'
2025-11-20 08:22:59 (59865): Status Report: CPU Time: '173680.000000'
2025-11-20 09:06:04 (59865): Guest Log:  *** Job finished ***
2025-11-20 09:06:04 (59865): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:17,598 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:17,598 | WARNING  | will wait for a maximum of 300 s for threads to finish
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:32,105 | INFO     | [monitor] cgroup control has ended
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:32,584 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140006454449984)>', '<ExcThread(monitor, started 140006152705792)>']
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:32,653 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:32,653 | INFO     | [monitor] control thread has ended
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,590 | INFO     | all workflow threads have been joined
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,590 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,590 | INFO     | traces error code: 0
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,590 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,676 [wrapper] ==== pilot stdout END ====
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,686 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,693 [wrapper] pilotpid: 6037
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,701 [wrapper] Pilot exit status: 0
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,727 [wrapper] pandaids: 6891601287
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,772 [wrapper] cleanup supervisor_pilot 12805 6038
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,778 [wrapper] Test setup, not cleaning
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,786 [wrapper] apfmon messages muted
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,794 [wrapper] ==== wrapper stdout END ====
2025-11-20 09:06:04 (59865): Guest Log: 2025-11-20 08:04:37,801 [wrapper] ==== wrapper stderr END ====
2025-11-20 09:06:04 (59865): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 09:06:04 (59865): Guest Log:     "exeErrorCode": 0,
2025-11-20 09:06:04 (59865): Guest Log:     "exeErrorDiag": "",
2025-11-20 09:06:04 (59865): Guest Log:     "pilotErrorCode": 0,
2025-11-20 09:06:04 (59865): Guest Log:     "pilotErrorDiag": "",
2025-11-20 09:06:04 (59865): Guest Log:  *** Listing of results directory ***
2025-11-20 09:06:04 (59865): Guest Log: total 905784
2025-11-20 09:06:04 (59865): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 18:50 pilot3.tar.gz
2025-11-20 09:06:04 (59865): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 19:05 queuedata.json
2025-11-20 09:06:04 (59865): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 19:08 runpilot2-wrapper.sh
2025-11-20 09:06:04 (59865): Guest Log: -rw-r-----. 1 atlas atlas     15120 Nov 19 21:26 start_atlas.sh
2025-11-20 09:06:04 (59865): Guest Log: -rw-r-----. 1 atlas atlas    590102 Nov 19 21:26 input.tar.gz
2025-11-20 09:06:04 (59865): Guest Log: -rw-r--r--. 1 atlas atlas      8121 Nov 19 21:26 init_data.xml
2025-11-20 09:06:04 (59865): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 19 21:26 EVNT.47493065._000829.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 09:06:04 (59865): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 19 21:26 pandaJob.out
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas    989443 Nov 19 21:27 agis_schedconf.cvmfs.json
2025-11-20 09:06:04 (59865): Guest Log: drwx------. 5 atlas atlas      4096 Nov 19 21:27 pilot3
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas 911428382 Nov 20 08:03 HITS.47493068._006940.pool.root.1
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas      1045 Nov 20 08:03 memory_monitor_summary.json
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas   1525063 Nov 20 08:03 agis_ddmendpoints.agis.ALL.json
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas        95 Nov 20 08:03 pilot_heartbeat.json
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas   1628355 Nov 20 08:03 log.47493068._006940.job.log.tgz.1
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas      8630 Nov 20 08:03 heartbeat.json
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas      5063 Nov 20 08:04 pilotlog.txt
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas   4495897 Nov 20 08:04 log.47493068._006940.job.log.1
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas       353 Nov 20 08:04 output.list
2025-11-20 09:06:04 (59865): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 20 08:04 runtime_log
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas   6144000 Nov 20 08:04 result.tar.gz
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas       676 Nov 20 08:04 UgIMDm3Egf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmnPGKDmzect1m.diag
2025-11-20 09:06:04 (59865): Guest Log: -rw-r--r--. 1 atlas atlas      8669 Nov 20 08:04 runtime_log.err
2025-11-20 09:06:04 (59865): Guest Log: Looking for outputfile HITS.47493068._006940.pool.root.1
2025-11-20 09:06:04 (59865): Guest Log: HITS file was successfully produced
2025-11-20 09:06:04 (59865): Guest Log: -rw-------. 1 atlas atlas 911428382 Nov 20 08:03 /home/atlas/RunAtlas/HITS.47493068._006940.pool.root.1
2025-11-20 09:06:04 (59865): Guest Log: Successfully finished the ATLAS job!
2025-11-20 09:06:04 (59865): Guest Log: Copying the results back to the shared directory!
2025-11-20 09:06:04 (59865): Guest Log:  *** Contents of shared directory: ***
2025-11-20 09:06:04 (59865): Guest Log: total 415188
2025-11-20 09:06:04 (59865): Guest Log: -rw-rw----. 1 root root 408297763 Nov 19 21:26 ATLAS.root_0
2025-11-20 09:06:04 (59865): Guest Log: -rw-rw-r--. 1 root root      8121 Nov 19 21:26 init_data.xml
2025-11-20 09:06:04 (59865): Guest Log: -rw-rw----. 1 root root    590102 Nov 19 21:26 input.tar.gz
2025-11-20 09:06:04 (59865): Guest Log: -rw-r--r--. 1 root root   6144000 Nov 20  2025 result.tar.gz
2025-11-20 09:06:04 (59865): Guest Log: -rw-rw----. 1 root root     15120 Nov 19 21:26 start_atlas.sh
2025-11-20 09:06:04 (59865): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 09:06:04 (59865): VM Completion File Detected.
2025-11-20 09:06:04 (59865): Powering off VM.
2025-11-20 09:06:04 (59865): Successfully stopped VM.
2025-11-20 09:06:04 (59865): Deregistering VM. (boinc_2bbc601b665c9fad, slot#4)
2025-11-20 09:06:04 (59865): Removing network bandwidth throttle group from VM.
2025-11-20 09:06:04 (59865): Removing VM from VirtualBox.
2025-11-20 09:06:09 (59865): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN