Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:12 (1708712): wrapper (7.7.26015): starting
00:02:12 (1708712): wrapper: running run_atlas (--nthreads 9)
[2025-11-21 00:02:12] Arguments: --nthreads 9
[2025-11-21 00:02:12] Threads: 9
[2025-11-21 00:02:12] Checking for CVMFS
[2025-11-21 00:02:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 00:02:13] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 00:02:13] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 00:02:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 00:02:14] 2.13.3.0 9185 22359 326680 153108 0 444 28224986 32935936 16710 16776704 0 131658293 99.781 70895545 32239 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-21 00:02:14] CVMFS is ok
[2025-11-21 00:02:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 00:02:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 00:02:14] Further information can be found at the LHC@home message board.
[2025-11-21 00:02:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 00:02:14] Checking for apptainer binary...
[2025-11-21 00:02:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 00:02:14] Running /usr/bin/apptainer --version
[2025-11-21 00:02:14] apptainer version 1.4.4-1.el9
[2025-11-21 00:02:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 00:02:14] c-5-6.aglt2.org
[2025-11-21 00:02:14] apptainer works
[2025-11-21 00:02:14] Set ATHENA_PROC_NUMBER=9
[2025-11-21 00:02:14] Set ATHENA_CORE_NUMBER=9
[2025-11-21 00:02:14] Starting ATLAS job with PandaID=6891598850
[2025-11-21 00:02:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
09:31:13 (473776): wrapper (7.7.26015): starting
09:31:13 (473776): wrapper: running run_atlas (--nthreads 12)
[2025-11-22 09:31:13] Arguments: --nthreads 12
[2025-11-22 09:31:13] Threads: 12
[2025-11-22 09:31:13] This job has been restarted, cleaning up previous attempt
[2025-11-22 09:31:13] Checking for CVMFS
[2025-11-22 09:31:13] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 09:31:14] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 09:31:14] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 09:31:14] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 09:31:14] 2.13.3.0 9185 24368 319320 153174 2 359 30058825 32935937 20820 16776704 0 143409300 99.788 75058174 32117 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-22 09:31:14] CVMFS is ok
[2025-11-22 09:31:14] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 09:31:14] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 09:31:14] Further information can be found at the LHC@home message board.
[2025-11-22 09:31:14] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 09:31:14] Checking for apptainer binary...
[2025-11-22 09:31:14] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 09:31:14] Running /usr/bin/apptainer --version
[2025-11-22 09:31:14] apptainer version 1.4.4-1.el9
[2025-11-22 09:31:14] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 09:31:14] c-5-6.aglt2.org
[2025-11-22 09:31:14] apptainer works
[2025-11-22 09:31:14] Set ATHENA_PROC_NUMBER=12
[2025-11-22 09:31:14] Set ATHENA_CORE_NUMBER=12
[2025-11-22 09:31:14] Starting ATLAS job with PandaID=6891598850
[2025-11-22 09:31:14] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-24 03:09:28]  *** The last 200 lines of the pilot log: ***
[2025-11-24 03:09:28] 2025-11-24 08:08:05,234 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:28] 2025-11-24 08:08:05,561 | INFO     | time since job start (149794s) is within the limit (172800.0s)
[2025-11-24 03:09:28] 2025-11-24 08:08:07,570 | INFO     | time since job start (149796s) is within the limit (172800.0s)
[2025-11-24 03:09:28] 2025-11-24 08:08:07,741 | INFO     | monitor loop #8243: job 0:6891598850 is in state 'finished'
[2025-11-24 03:09:28] 2025-11-24 08:08:07,742 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:28] 2025-11-24 08:08:09,577 | INFO     | time since job start (149798s) is within the limit (172800.0s)
[2025-11-24 03:09:28] 2025-11-24 08:08:10,322 | INFO     | monitor loop #8244: job 0:6891598850 is in state 'finished'
[2025-11-24 03:09:28] 2025-11-24 08:08:10,323 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:28] 2025-11-24 08:08:12,839 | INFO     | PID=477469 has CPU usage=2.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 03:09:28] 2025-11-24 08:08:12,839 | INFO     | .. there are 42 such processes running
[2025-11-24 03:09:28] 2025-11-24 08:08:12,861 | INFO     | monitor loop #8245: job 0:6891598850 is in state 'finished'
[2025-11-24 03:09:28] 2025-11-24 08:08:12,862 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:28] 2025-11-24 08:08:13,851 | INFO     | time since job start (149802s) is within the limit (172800.0s)
[2025-11-24 03:09:28] 2025-11-24 08:08:15,404 | INFO     | monitor loop #8246: job 0:6891598850 is in state 'finished'
[2025-11-24 03:09:28] 2025-11-24 08:08:15,406 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-24 03:09:28] 2025-11-24 08:08:15,858 | INFO     | time since job start (149804s) is within the limit (172800.0s)
[2025-11-24 03:09:28] 2025-11-24 08:08:16,219 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-24 03:09:28] 2025-11-24 08:08:16,230 | INFO     | found 20 cores (10 cores per socket, 2 sockets) HT, CPU MHz: 2600.0679499999997
[2025-11-24 03:09:28] 2025-11-24 08:08:16,237 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891598850/memory_monitor_summary.json (trf name=prmon)
[2025-11-24 03:09:28] 2025-11-24 08:08:16,237 | INFO     | extracted standard info from prmon json
[2025-11-24 03:09:28] 2025-11-24 08:08:16,238 | INFO     | extracted standard memory fields from prmon json
[2025-11-24 03:09:28] 2025-11-24 08:08:16,238 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-24 03:09:28] 2025-11-24 08:08:16,282 | INFO     | fitting pss+swap vs Time
[2025-11-24 03:09:28] 2025-11-24 08:08:16,286 | INFO     | sum of square deviations: 4587960983911.082
[2025-11-24 03:09:28] 2025-11-24 08:08:16,552 | INFO     | sum of deviations: 10401727338154.732
[2025-11-24 03:09:28] 2025-11-24 08:08:16,553 | INFO     | mean x: 1763896774.762118
[2025-11-24 03:09:28] 2025-11-24 08:08:16,553 | INFO     | mean y: 3567253.713645621
[2025-11-24 03:09:28] 2025-11-24 08:08:16,553 | INFO     | intersect: -3995501911.884488
[2025-11-24 03:09:28] 2025-11-24 08:08:16,557 | INFO     | chi2: 20.16929978079338
[2025-11-24 03:09:28] 2025-11-24 08:08:16,560 | INFO     | sum of square deviations: 4559987657672.671
[2025-11-24 03:09:28] 2025-11-24 08:08:16,704 | INFO     | sum of deviations: 11456511674728.104
[2025-11-24 03:09:28] 2025-11-24 08:08:16,704 | INFO     | mean x: 1763896622.269796
[2025-11-24 03:09:28] 2025-11-24 08:08:16,705 | INFO     | mean y: 3573003.266122449
[2025-11-24 03:09:28] 2025-11-24 08:08:16,705 | INFO     | intersect: -4428040361.310659
[2025-11-24 03:09:28] 2025-11-24 08:08:16,712 | INFO     | chi2: 16.7499884247542
[2025-11-24 03:09:28] 2025-11-24 08:08:16,712 | INFO     | current chi2=16.7499884247542 (change=16.95304940281213 %)
[2025-11-24 03:09:28] 2025-11-24 08:08:16,712 | INFO     | right removable region: 2449
[2025-11-24 03:09:28] 2025-11-24 08:08:16,720 | INFO     | sum of square deviations: 4559982173230.209
[2025-11-24 03:09:28] 2025-11-24 08:08:17,436 | INFO     | sum of deviations: 9529255942317.938
[2025-11-24 03:09:28] 2025-11-24 08:08:17,436 | INFO     | mean x: 1763896927.2693877
[2025-11-24 03:09:28] 2025-11-24 08:08:17,436 | INFO     | mean y: 3572007.1591836736
[2025-11-24 03:09:28] 2025-11-24 08:08:17,437 | INFO     | intersect: -3682544437.4389405
[2025-11-24 03:09:28] 2025-11-24 08:08:17,442 | INFO     | chi2: 17.807507901652645
[2025-11-24 03:09:28] 2025-11-24 08:08:17,442 | INFO     | current chi2=17.807507901652645 (change=11.709835764302532 %)
[2025-11-24 03:09:28] 2025-11-24 08:08:17,442 | INFO     | left removable region: 10
[2025-11-24 03:09:28] 2025-11-24 08:08:17,449 | INFO     | sum of square deviations: 4498836763288.566
[2025-11-24 03:09:28] 2025-11-24 08:08:17,814 | INFO     | sum of deviations: 10541747373607.168
[2025-11-24 03:09:28] 2025-11-24 08:08:17,819 | INFO     | mean x: 1763896896.7843378
[2025-11-24 03:09:28] 2025-11-24 08:08:17,819 | INFO     | mean y: 3580215.2759327595
[2025-11-24 03:09:28] 2025-11-24 08:08:17,819 | INFO     | intersect: -4129611642.3894806
[2025-11-24 03:09:28] 2025-11-24 08:08:17,827 | INFO     | chi2: 13.675039118955969
[2025-11-24 03:09:28] 2025-11-24 08:08:17,827 | INFO     | current memory leak: 2.34 B/s (using 2439 data points, chi2=13.68)
[2025-11-24 03:09:28] 2025-11-24 08:08:17,834 | INFO     | could have reported an average CPU frequency of 2600 MHz (84 samples)
[2025-11-24 03:09:28] 2025-11-24 08:08:17,834 | INFO     | ..............................
[2025-11-24 03:09:28] 2025-11-24 08:08:17,834 | INFO     | . Timing measurements:
[2025-11-24 03:09:28] 2025-11-24 08:08:17,834 | INFO     | . get job = 0 s
[2025-11-24 03:09:28] 2025-11-24 08:08:17,835 | INFO     | . initial setup = 2 s
[2025-11-24 03:09:28] 2025-11-24 08:08:17,835 | INFO     | . payload setup = 8 s
[2025-11-24 03:09:28] 2025-11-24 08:08:17,835 | INFO     | . stage-in = 0 s
[2025-11-24 03:09:28] 2025-11-24 08:08:17,835 | INFO     | . payload execution = 149725 s
[2025-11-24 03:09:28] 2025-11-24 08:08:17,835 | INFO     | . stage-out = 9 s
[2025-11-24 03:09:28] 2025-11-24 08:08:17,835 | INFO     | . log creation = 3 s
[2025-11-24 03:09:28] 2025-11-24 08:08:17,835 | INFO     | ..............................
[2025-11-24 03:09:28] 2025-11-24 08:08:18,016 | INFO     | 
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | job summary report
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | --------------------------------------------------
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | PanDA job id: 6891598850
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | task id: 47493068
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | errors: (none)
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | pilot state: finished 
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | transexitcode: 0
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | exeerrorcode: 0
[2025-11-24 03:09:28] 2025-11-24 08:08:18,017 | INFO     | exeerrordiag: 
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | exitcode: 0
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | exitmsg: OK
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | cpuconsumptiontime: 306663 s
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | nevents: 1000
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | neventsw: 0
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | pid: 484396
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | pgrp: 484396
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | corecount: 12
[2025-11-24 03:09:28] 2025-11-24 08:08:18,018 | INFO     | event service: False
[2025-11-24 03:09:28] 2025-11-24 08:08:18,019 | INFO     | sizes: {0: 2298796, 1: 2298796, 5: 2299086, 11: 2299142, 149737: 2390880, 149738: 2390879, 149748: 2400057, 149749: 2400113, 149788: 2400359}
[2025-11-24 03:09:28] 2025-11-24 08:08:18,019 | INFO     | --------------------------------------------------
[2025-11-24 03:09:28] 2025-11-24 08:08:18,019 | INFO     | 
[2025-11-24 03:09:28] 2025-11-24 08:08:18,019 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-24 03:09:28] 2025-11-24 08:08:18,188 | INFO     | time since job start (149807s) is within the limit (172800.0s)
[2025-11-24 03:09:28] 2025-11-24 08:08:18,262 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,262 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,262 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,262 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,262 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,262 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,262 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,263 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,264 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-24 03:09:28] 2025-11-24 08:08:18,264 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,264 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-24 03:09:28] 2025-11-24 08:08:18,264 | INFO     | job 6891598850 has completed (purged errors)
[2025-11-24 03:09:28] 2025-11-24 08:08:18,264 | INFO     | overall cleanup function is called
[2025-11-24 03:09:28] 2025-11-24 08:08:19,421 | INFO     | --- collectZombieJob: --- 10, [484396]
[2025-11-24 03:09:28] 2025-11-24 08:08:19,422 | INFO     | zombie collector waiting for pid 484396
[2025-11-24 03:09:28] 2025-11-24 08:08:19,422 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-24 03:09:28] 2025-11-24 08:08:19,422 | INFO     | collected zombie processes
[2025-11-24 03:09:28] 2025-11-24 08:08:19,422 | INFO     | will attempt to kill all subprocesses of pid=484396
[2025-11-24 03:09:28] 2025-11-24 08:08:21,201 | INFO     | process IDs to be killed: [484396] (in reverse order)
[2025-11-24 03:09:28] 2025-11-24 08:08:21,561 | WARNING  | found no corresponding commands to process id(s)
[2025-11-24 03:09:28] 2025-11-24 08:08:21,561 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-24 03:09:28] 2025-11-24 08:08:21,593 | INFO     | did not find any defunct processes belonging to 484396
[2025-11-24 03:09:28] 2025-11-24 08:08:21,620 | INFO     | did not find any defunct processes belonging to 484396
[2025-11-24 03:09:28] 2025-11-24 08:08:21,627 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-24 03:09:28] 2025-11-24 08:08:21,627 | INFO     | ready for new job
[2025-11-24 03:09:28] 2025-11-24 08:08:21,628 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-24 03:09:28] 2025-11-24 08:08:21,642 | INFO     | ***************************************
[2025-11-24 03:09:28] 2025-11-24 08:08:21,642 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-24 03:09:28] 2025-11-24 08:08:21,642 | INFO     | ***************************************
[2025-11-24 03:09:28] 2025-11-24 08:08:21,643 | INFO     | 
[2025-11-24 03:09:28] 2025-11-24 08:08:21,648 | INFO     | architecture information:
[2025-11-24 03:09:28] 2025-11-24 08:08:21,653 | INFO     | executing command: cat /etc/os-release
[2025-11-24 03:09:28] 2025-11-24 08:08:21,690 | INFO     | cat /etc/os-release:
[2025-11-24 03:09:28] NAME="CentOS Linux"
[2025-11-24 03:09:28] VERSION="7 (Core)"
[2025-11-24 03:09:28] ID="centos"
[2025-11-24 03:09:28] ID_LIKE="rhel fedora"
[2025-11-24 03:09:28] VERSION_ID="7"
[2025-11-24 03:09:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-24 03:09:28] ANSI_COLOR="0;31"
[2025-11-24 03:09:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-24 03:09:28] HOME_URL="https://www.centos.org/"
[2025-11-24 03:09:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-24 03:09:28] 
[2025-11-24 03:09:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-24 03:09:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-24 03:09:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-24 03:09:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-24 03:09:28] 
[2025-11-24 03:09:28] 2025-11-24 08:08:21,690 | INFO     | ***************************************
[2025-11-24 03:09:28] 2025-11-24 08:08:22,193 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-24 03:09:28] 2025-11-24 08:08:22,237 | INFO     | sufficient remaining disk space (71521271808 B)
[2025-11-24 03:09:28] 2025-11-24 08:08:22,237 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-24 03:09:28] 2025-11-24 08:08:22,237 | INFO     | current server update state: UPDATING_FINAL
[2025-11-24 03:09:28] 2025-11-24 08:08:22,238 | INFO     | update_server=False
[2025-11-24 03:09:28] 2025-11-24 08:08:22,238 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-24 03:09:28] 2025-11-24 08:08:22,238 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:09:28] 2025-11-24 08:08:22,238 | INFO     | aborting loop
[2025-11-24 03:09:28] 2025-11-24 08:08:22,238 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-24 03:09:28] 2025-11-24 08:08:22,239 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-24 03:09:28] 2025-11-24 08:08:22,944 | INFO     | all data control threads have been joined
[2025-11-24 03:09:28] 2025-11-24 08:08:23,023 | INFO     | all payload control threads have been joined
[2025-11-24 03:09:28] 2025-11-24 08:08:23,076 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-24 03:09:28] 2025-11-24 08:08:23,243 | INFO     | [job] retrieve thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:23,256 | INFO     | [job] job monitor thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:23,317 | INFO     | [payload] validate_pre thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:23,334 | INFO     | all job control threads have been joined
[2025-11-24 03:09:28] 2025-11-24 08:08:23,451 | INFO     | [payload] execute_payloads thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:23,608 | INFO     | [payload] validate_post thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:23,831 | INFO     | [job] validate thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:23,950 | INFO     | [data] control thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,005 | INFO     | [job] create_data_payload thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,010 | INFO     | [data] copytool_in thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,029 | INFO     | [payload] control thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,081 | INFO     | [job] queue monitor thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,191 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,255 | INFO     | [data] copytool_out thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,340 | INFO     | [job] control thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:24,520 | INFO     | [payload] failed_post thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:26,264 | INFO     | [data] queue_monitor thread has finished
[2025-11-24 03:09:28] 2025-11-24 08:08:53,457 | INFO     | PID=477469 has CPU usage=5.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-24 03:09:28] 2025-11-24 08:08:53,457 | INFO     | .. there are 42 such processes running
[2025-11-24 03:09:28] 2025-11-24 08:08:53,461 | INFO     | found 0 job(s) in 20 queues
[2025-11-24 03:09:28] 2025-11-24 08:08:53,462 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-24 03:09:28] 2025-11-24 08:08:53,462 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-24 03:09:28] 2025-11-24 08:09:19,492 | INFO     | [monitor] cgroup control has ended
[2025-11-24 03:09:28] 2025-11-24 08:09:21,332 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139823170381632)>', '<ExcThread(monitor, started 139822316381952)>']
[2025-11-24 03:09:28] 2025-11-24 08:09:21,772 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-24 03:09:28] 2025-11-24 08:09:21,773 | INFO     | [monitor] control thread has ended
[2025-11-24 03:09:28] 2025-11-24 08:09:26,358 | INFO     | all workflow threads have been joined
[2025-11-24 03:09:28] 2025-11-24 08:09:26,359 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-24 03:09:28] 2025-11-24 08:09:26,359 | INFO     | traces error code: 0
[2025-11-24 03:09:28] 2025-11-24 08:09:26,359 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-24 03:09:28] 2025-11-24 08:09:26,792 [wrapper] ==== pilot stdout END ====
[2025-11-24 03:09:28] 2025-11-24 08:09:26,798 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-24 03:09:28] 2025-11-24 08:09:26,801 [wrapper] pilotpid: 477469
[2025-11-24 03:09:28] 2025-11-24 08:09:26,805 [wrapper] Pilot exit status: 0
[2025-11-24 03:09:28] 2025-11-24 08:09:26,944 [wrapper] pandaids: 6891598850 6891598850
[2025-11-24 03:09:28] 2025-11-24 08:09:27,173 [wrapper] cleanup supervisor_pilot  333642 477470
[2025-11-24 03:09:28] 2025-11-24 08:09:27,255 [wrapper] Test setup, not cleaning
[2025-11-24 03:09:28] 2025-11-24 08:09:27,273 [wrapper] apfmon messages muted
[2025-11-24 03:09:28] 2025-11-24 08:09:27,276 [wrapper] ==== wrapper stdout END ====
[2025-11-24 03:09:28] 2025-11-24 08:09:27,279 [wrapper] ==== wrapper stderr END ====
[2025-11-24 03:09:28]  *** Error codes and diagnostics ***
[2025-11-24 03:09:28]     "exeErrorCode": 0,
[2025-11-24 03:09:28]     "exeErrorDiag": "",
[2025-11-24 03:09:28]     "pilotErrorCode": 0,
[2025-11-24 03:09:28]     "pilotErrorDiag": "",
[2025-11-24 03:09:28]  *** Listing of results directory ***
[2025-11-24 03:09:28] total 1743400
[2025-11-24 03:09:28] drwx------. 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 13:50 pilot3.tar.gz
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 14:00 queuedata.json
[2025-11-24 03:09:28] -rwx------. 1 boincer umatlas     36292 Nov 18 14:01 runpilot2-wrapper.sh
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas       100 Nov 21 00:02 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-24 03:09:28] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 21 00:02 run_atlas
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas       105 Nov 21 00:02 job.xml
[2025-11-24 03:09:28] -rw-r--r--. 3 boincer umatlas 411179629 Nov 21 00:02 EVNT.47493065._000811.pool.root.1
[2025-11-24 03:09:28] -rw-r--r--. 3 boincer umatlas 411179629 Nov 21 00:02 ATLAS.root_0
[2025-11-24 03:09:28] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 00:02 start_atlas.sh
[2025-11-24 03:09:28] drwxrwx--x. 2 boincer umatlas      4096 Nov 21 00:02 shared
[2025-11-24 03:09:28] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:02 input.tar.gz
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas         0 Nov 21 00:02 boinc_lockfile
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas      2773 Nov 22 09:31 pandaJob.out
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas    989768 Nov 22 09:31 agis_schedconf.cvmfs.json
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas       534 Nov 24 02:13 boinc_task_state.xml
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas      6660 Nov 24 03:01 init_data.xml
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas 916186832 Nov 24 03:05 HITS.47493068._006759.pool.root.1
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas      1071 Nov 24 03:07 memory_monitor_summary.json
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas   1526164 Nov 24 03:07 agis_ddmendpoints.agis.ALL.json
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas   3541637 Nov 24 03:07 log.47493068._006759.job.log.tgz.1
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas      8647 Nov 24 03:08 heartbeat.json
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas        97 Nov 24 03:08 pilot_heartbeat.json
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas      8192 Nov 24 03:09 boinc_mmap_file
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas        30 Nov 24 03:09 wrapper_checkpoint.txt
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas      4823 Nov 24 03:09 pilotlog.txt
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas  17843532 Nov 24 03:09 log.47493068._006759.job.log.1
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas       353 Nov 24 03:09 output.list
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas       620 Nov 24 03:09 runtime_log
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas  21401600 Nov 24 03:09 result.tar.gz
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas      8777 Nov 24 03:09 runtime_log.err
[2025-11-24 03:09:28] -rw-------. 1 boincer umatlas       790 Nov 24 03:09 jitLDmV8ff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm6NGKDmbmXSIn.diag
[2025-11-24 03:09:28] -rw-r--r--. 1 boincer umatlas     24033 Nov 24 03:09 stderr.txt
[2025-11-24 03:09:29] HITS file was successfully produced:
[2025-11-24 03:09:29] -rw-------. 1 boincer umatlas 916186832 Nov 24 03:05 shared/HITS.pool.root.1
[2025-11-24 03:09:29]  *** Contents of shared directory: ***
[2025-11-24 03:09:29] total 1317764
[2025-11-24 03:09:29] -rw-r--r--. 3 boincer umatlas 411179629 Nov 21 00:02 ATLAS.root_0
[2025-11-24 03:09:29] -rw-r--r--. 2 boincer umatlas     15120 Nov 21 00:02 start_atlas.sh
[2025-11-24 03:09:29] -rw-r--r--. 2 boincer umatlas    590097 Nov 21 00:02 input.tar.gz
[2025-11-24 03:09:29] -rw-------. 1 boincer umatlas 916186832 Nov 24 03:05 HITS.pool.root.1
[2025-11-24 03:09:29] -rw-------. 1 boincer umatlas  21401600 Nov 24 03:09 result.tar.gz
03:09:30 (473776): run_atlas exited; CPU time 310938.042368
03:09:30 (473776): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN