Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:01:48 (1984579): wrapper (7.7.26015): starting
00:01:48 (1984579): wrapper: running run_atlas (--nthreads 12)
[2025-11-19 00:01:48] Arguments: --nthreads 12
[2025-11-19 00:01:48] Threads: 12
[2025-11-19 00:01:48] Checking for CVMFS
[2025-11-19 00:01:48] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:01:48] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:01:48] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:01:48] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:01:48] 2.13.2.0 7528 22384 160336 153030 0 433 40588739 40960000 20598 16776704 0 35391049 99.748 19881984 37040 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 00:01:48] CVMFS is ok
[2025-11-19 00:01:48] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:01:48] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:01:48] Further information can be found at the LHC@home message board.
[2025-11-19 00:01:48] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:01:48] Checking for apptainer binary...
[2025-11-19 00:01:48] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:01:48] Running /usr/bin/apptainer --version
[2025-11-19 00:01:48] apptainer version 1.4.4-1.el9
[2025-11-19 00:01:48] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:01:49] c-212-9.aglt2.org
[2025-11-19 00:01:49] apptainer works
[2025-11-19 00:01:49] Set ATHENA_PROC_NUMBER=12
[2025-11-19 00:01:49] Set ATHENA_CORE_NUMBER=12
[2025-11-19 00:01:49] Starting ATLAS job with PandaID=6891572027
[2025-11-19 00:01:49] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 21:07:33]  *** The last 200 lines of the pilot log: ***
[2025-11-19 21:07:33] 2025-11-20 02:06:37,356 | INFO     | pilot will not update the server (heartbeat message will be written to file)
[2025-11-19 21:07:33] 2025-11-20 02:06:37,356 | INFO     | log transfer has been attempted: DONE
[2025-11-19 21:07:33] 2025-11-20 02:06:37,356 | INFO     | job 6891572027 has finished - writing final server update
[2025-11-19 21:07:33] 2025-11-20 02:06:37,356 | INFO     | total number of processed events: 1000 (read)
[2025-11-19 21:07:33] 2025-11-20 02:06:37,373 | INFO     | executing command: lscpu
[2025-11-19 21:07:33] 2025-11-20 02:06:37,471 | INFO     | executing command: export ATLAS_LOCAL_ROOT_BASE=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase;source ${ATLAS_LOCAL_ROOT_BASE}/user/atlasLocalSetup.sh --quiet;lsetup
[2025-11-19 21:07:33] 2025-11-20 02:06:37,769 | INFO     | monitor loop #4859: job 0:6891572027 is in state 'finished'
[2025-11-19 21:07:33] 2025-11-20 02:06:37,770 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 21:07:33] 2025-11-20 02:06:38,026 | INFO     | time since job start (75862s) is within the limit (172800.0s)
[2025-11-19 21:07:33] 2025-11-20 02:06:40,033 | INFO     | time since job start (75864s) is within the limit (172800.0s)
[2025-11-19 21:07:33] 2025-11-20 02:06:40,274 | INFO     | monitor loop #4860: job 0:6891572027 is in state 'finished'
[2025-11-19 21:07:33] 2025-11-20 02:06:40,274 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 21:07:33] 2025-11-20 02:06:42,040 | INFO     | time since job start (75866s) is within the limit (172800.0s)
[2025-11-19 21:07:33] 2025-11-20 02:06:42,778 | INFO     | monitor loop #4861: job 0:6891572027 is in state 'finished'
[2025-11-19 21:07:33] 2025-11-20 02:06:42,779 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 21:07:33] 2025-11-20 02:06:43,782 | INFO     | PID=1993908 has CPU usage=14.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i 
[2025-11-19 21:07:33] 2025-11-20 02:06:43,782 | INFO     | .. there are 14 such processes running
[2025-11-19 21:07:33] 2025-11-20 02:06:43,798 | INFO     | CPU arch script returned: x86-64-v3
[2025-11-19 21:07:33] 2025-11-20 02:06:43,804 | INFO     | found 48 cores (24 cores per socket, 2 sockets) HT, CPU MHz: 2880.10375
[2025-11-19 21:07:33] 2025-11-20 02:06:43,819 | INFO     | using path: /tmp/boinchome/slots/2/PanDA_Pilot-6891572027/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 21:07:33] 2025-11-20 02:06:43,820 | INFO     | extracted standard info from prmon json
[2025-11-19 21:07:33] 2025-11-20 02:06:43,820 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 21:07:33] 2025-11-20 02:06:43,820 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 21:07:33] 2025-11-20 02:06:43,838 | INFO     | fitting pss+swap vs Time
[2025-11-19 21:07:33] 2025-11-20 02:06:43,839 | INFO     | sum of square deviations: 595684030034.5005
[2025-11-19 21:07:33] 2025-11-20 02:06:43,868 | INFO     | sum of deviations: 13536968330914.084
[2025-11-19 21:07:33] 2025-11-20 02:06:43,868 | INFO     | mean x: 1763566492.7377312
[2025-11-19 21:07:33] 2025-11-20 02:06:43,868 | INFO     | mean y: 3644839.5462590507
[2025-11-19 21:07:33] 2025-11-20 02:06:43,869 | INFO     | intersect: -40073548031.09224
[2025-11-19 21:07:33] 2025-11-20 02:06:43,870 | INFO     | chi2: 20.537997434405632
[2025-11-19 21:07:33] 2025-11-20 02:06:43,871 | INFO     | sum of square deviations: 588528666276.7269
[2025-11-19 21:07:33] 2025-11-20 02:06:43,904 | INFO     | sum of deviations: 14082859262280.309
[2025-11-19 21:07:33] 2025-11-20 02:06:43,904 | INFO     | mean x: 1763566340.2609048
[2025-11-19 21:07:33] 2025-11-20 02:06:43,904 | INFO     | mean y: 3656470.5686591277
[2025-11-19 21:07:33] 2025-11-20 02:06:43,904 | INFO     | intersect: -42196593054.59402
[2025-11-19 21:07:33] 2025-11-20 02:06:43,905 | INFO     | chi2: 16.80983666431896
[2025-11-19 21:07:33] 2025-11-20 02:06:43,905 | INFO     | current chi2=16.80983666431896 (change=18.152503826109097 %)
[2025-11-19 21:07:33] 2025-11-20 02:06:43,905 | INFO     | right removable region: 1237
[2025-11-19 21:07:33] 2025-11-20 02:06:43,906 | INFO     | sum of square deviations: 588524315756.727
[2025-11-19 21:07:33] 2025-11-20 02:06:43,937 | INFO     | sum of deviations: 12908971121211.527
[2025-11-19 21:07:33] 2025-11-20 02:06:43,937 | INFO     | mean x: 1763566645.2609048
[2025-11-19 21:07:33] 2025-11-20 02:06:43,937 | INFO     | mean y: 3658216.7011308563
[2025-11-19 21:07:33] 2025-11-20 02:06:43,937 | INFO     | intersect: -38679247968.29228
[2025-11-19 21:07:33] 2025-11-20 02:06:43,938 | INFO     | chi2: 16.679092916275206
[2025-11-19 21:07:33] 2025-11-20 02:06:43,938 | INFO     | current chi2=16.679092916275206 (change=18.789098257778132 %)
[2025-11-19 21:07:33] 2025-11-20 02:06:43,939 | INFO     | left removable region: 10
[2025-11-19 21:07:33] 2025-11-20 02:06:43,940 | INFO     | sum of square deviations: 572980527828.8862
[2025-11-19 21:07:33] 2025-11-20 02:06:43,974 | INFO     | sum of deviations: 13110327334525.043
[2025-11-19 21:07:33] 2025-11-20 02:06:43,974 | INFO     | mean x: 1763566614.812551
[2025-11-19 21:07:33] 2025-11-20 02:06:43,974 | INFO     | mean y: 3683140.865525672
[2025-11-19 21:07:33] 2025-11-20 02:06:43,974 | INFO     | intersect: -40348361079.62773
[2025-11-19 21:07:33] 2025-11-20 02:06:43,975 | INFO     | chi2: 10.154370443699046
[2025-11-19 21:07:33] 2025-11-20 02:06:43,976 | INFO     | current memory leak: 22.88 B/s (using 1227 data points, chi2=10.15)
[2025-11-19 21:07:33] 2025-11-20 02:06:43,978 | INFO     | could have reported an average CPU frequency of 3002 MHz (45 samples)
[2025-11-19 21:07:33] 2025-11-20 02:06:43,978 | INFO     | ..............................
[2025-11-19 21:07:33] 2025-11-20 02:06:43,978 | INFO     | . Timing measurements:
[2025-11-19 21:07:33] 2025-11-20 02:06:43,978 | INFO     | . get job = 0 s
[2025-11-19 21:07:33] 2025-11-20 02:06:43,978 | INFO     | . initial setup = 5 s
[2025-11-19 21:07:33] 2025-11-20 02:06:43,978 | INFO     | . payload setup = 21 s
[2025-11-19 21:07:33] 2025-11-20 02:06:43,978 | INFO     | . stage-in = 0 s
[2025-11-19 21:07:33] 2025-11-20 02:06:43,979 | INFO     | . payload execution = 75794 s
[2025-11-19 21:07:33] 2025-11-20 02:06:43,979 | INFO     | . stage-out = 3 s
[2025-11-19 21:07:33] 2025-11-20 02:06:43,979 | INFO     | . log creation = 0 s
[2025-11-19 21:07:33] 2025-11-20 02:06:43,979 | INFO     | ..............................
[2025-11-19 21:07:33] 2025-11-20 02:06:44,454 | INFO     | 
[2025-11-19 21:07:33] 2025-11-20 02:06:44,480 | INFO     | job summary report
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | --------------------------------------------------
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | PanDA job id: 6891572027
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | task id: 47493068
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | errors: (none)
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | pilot state: finished 
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | transexitcode: 0
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | exeerrorcode: 0
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | exeerrordiag: 
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | exitcode: 0
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | exitmsg: OK
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | cpuconsumptiontime: 226594 s
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | nevents: 1000
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | neventsw: 0
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | pid: 2014027
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | pgrp: 2014027
[2025-11-19 21:07:33] 2025-11-20 02:06:44,481 | INFO     | corecount: 12
[2025-11-19 21:07:33] 2025-11-20 02:06:44,482 | INFO     | event service: False
[2025-11-19 21:07:33] 2025-11-20 02:06:44,482 | INFO     | sizes: {0: 2296371, 1: 2297227, 2: 2297227, 12: 2297255, 13: 2297545, 23: 2297601, 75818: 2358184, 75819: 2358183, 75823: 2367289, 75832: 2367479}
[2025-11-19 21:07:33] 2025-11-20 02:06:44,482 | INFO     | --------------------------------------------------
[2025-11-19 21:07:33] 2025-11-20 02:06:44,482 | INFO     | 
[2025-11-19 21:07:33] 2025-11-20 02:06:44,482 | INFO     | executing command: ls -lF /tmp/boinchome/slots/2
[2025-11-19 21:07:33] 2025-11-20 02:06:44,514 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,515 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,516 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 21:07:33] 2025-11-20 02:06:44,517 | INFO     | job 6891572027 has completed (purged errors)
[2025-11-19 21:07:33] 2025-11-20 02:06:44,517 | INFO     | overall cleanup function is called
[2025-11-19 21:07:33] 2025-11-20 02:06:45,538 | INFO     | --- collectZombieJob: --- 10, [2014027]
[2025-11-19 21:07:33] 2025-11-20 02:06:45,539 | INFO     | zombie collector waiting for pid 2014027
[2025-11-19 21:07:33] 2025-11-20 02:06:45,539 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 21:07:33] 2025-11-20 02:06:45,539 | INFO     | collected zombie processes
[2025-11-19 21:07:33] 2025-11-20 02:06:45,539 | INFO     | will attempt to kill all subprocesses of pid=2014027
[2025-11-19 21:07:33] 2025-11-20 02:06:46,019 | INFO     | process IDs to be killed: [2014027] (in reverse order)
[2025-11-19 21:07:33] 2025-11-20 02:06:46,162 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 21:07:33] 2025-11-20 02:06:46,165 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 21:07:33] 2025-11-20 02:06:46,182 | INFO     | did not find any defunct processes belonging to 2014027
[2025-11-19 21:07:33] 2025-11-20 02:06:46,199 | INFO     | did not find any defunct processes belonging to 2014027
[2025-11-19 21:07:33] 2025-11-20 02:06:46,201 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 21:07:33] 2025-11-20 02:06:46,201 | INFO     | ready for new job
[2025-11-19 21:07:33] 2025-11-20 02:06:46,201 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 21:07:33] 2025-11-20 02:06:46,206 | INFO     | ***************************************
[2025-11-19 21:07:33] 2025-11-20 02:06:46,207 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 21:07:33] 2025-11-20 02:06:46,207 | INFO     | ***************************************
[2025-11-19 21:07:33] 2025-11-20 02:06:46,207 | INFO     | 
[2025-11-19 21:07:33] 2025-11-20 02:06:46,213 | INFO     | architecture information:
[2025-11-19 21:07:33] 2025-11-20 02:06:46,214 | INFO     | executing command: cat /etc/os-release
[2025-11-19 21:07:33] 2025-11-20 02:06:46,238 | INFO     | cat /etc/os-release:
[2025-11-19 21:07:33] NAME="CentOS Linux"
[2025-11-19 21:07:33] VERSION="7 (Core)"
[2025-11-19 21:07:33] ID="centos"
[2025-11-19 21:07:33] ID_LIKE="rhel fedora"
[2025-11-19 21:07:33] VERSION_ID="7"
[2025-11-19 21:07:33] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 21:07:33] ANSI_COLOR="0;31"
[2025-11-19 21:07:33] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 21:07:33] HOME_URL="https://www.centos.org/"
[2025-11-19 21:07:33] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 21:07:33] 
[2025-11-19 21:07:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 21:07:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 21:07:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 21:07:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 21:07:33] 
[2025-11-19 21:07:33] 2025-11-20 02:06:46,239 | INFO     | ***************************************
[2025-11-19 21:07:33] 2025-11-20 02:06:46,743 | INFO     | executing command: df -mP /tmp/boinchome/slots/2
[2025-11-19 21:07:33] 2025-11-20 02:06:46,771 | INFO     | sufficient remaining disk space (125362503680 B)
[2025-11-19 21:07:33] 2025-11-20 02:06:46,772 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 21:07:33] 2025-11-20 02:06:46,772 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 21:07:33] 2025-11-20 02:06:46,772 | INFO     | update_server=False
[2025-11-19 21:07:33] 2025-11-20 02:06:46,772 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 21:07:33] 2025-11-20 02:06:46,773 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 21:07:33] 2025-11-20 02:06:46,774 | INFO     | aborting loop
[2025-11-19 21:07:33] 2025-11-20 02:06:47,419 | INFO     | all data control threads have been joined
[2025-11-19 21:07:33] 2025-11-20 02:06:47,428 | INFO     | all payload control threads have been joined
[2025-11-19 21:07:33] 2025-11-20 02:06:47,777 | INFO     | [job] retrieve thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:47,779 | INFO     | [job] job monitor thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:47,798 | INFO     | [payload] validate_post thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,052 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 21:07:33] 2025-11-20 02:06:48,079 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,171 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,391 | INFO     | all job control threads have been joined
[2025-11-19 21:07:33] 2025-11-20 02:06:48,397 | INFO     | [payload] failed_post thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,425 | INFO     | [data] control thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,434 | INFO     | [payload] control thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,708 | INFO     | [data] copytool_in thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,763 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:48,944 | INFO     | [job] validate thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:49,045 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:49,162 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 21:07:33] 2025-11-20 02:06:49,397 | INFO     | [job] control thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:50,061 | INFO     | [data] copytool_out thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:50,144 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 21:07:33] 2025-11-20 02:06:50,168 | INFO     | [job] queue monitor thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:06:54,158 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 21:07:33] 2025-11-20 02:07:16,313 | INFO     | PID=1993908 has CPU usage=3.9% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 21:07:33] 2025-11-20 02:07:16,313 | INFO     | .. there are 14 such processes running
[2025-11-19 21:07:33] 2025-11-20 02:07:16,315 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 21:07:33] 2025-11-20 02:07:16,315 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 21:07:33] 2025-11-20 02:07:16,315 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 21:07:33] 2025-11-20 02:07:27,672 | INFO     | [monitor] cgroup control has ended
[2025-11-19 21:07:33] 2025-11-20 02:07:28,262 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139752028895040)>', '<ExcThread(monitor, started 139751281633024)>']
[2025-11-19 21:07:33] 2025-11-20 02:07:28,391 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 21:07:33] 2025-11-20 02:07:28,392 | INFO     | [monitor] control thread has ended
[2025-11-19 21:07:33] 2025-11-20 02:07:33,288 | INFO     | all workflow threads have been joined
[2025-11-19 21:07:33] 2025-11-20 02:07:33,289 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 21:07:33] 2025-11-20 02:07:33,289 | INFO     | traces error code: 0
[2025-11-19 21:07:33] 2025-11-20 02:07:33,289 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 21:07:33] 2025-11-20 02:07:33,564 [wrapper] ==== pilot stdout END ====
[2025-11-19 21:07:33] 2025-11-20 02:07:33,568 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 21:07:33] 2025-11-20 02:07:33,592 [wrapper] pilotpid: 1993908
[2025-11-19 21:07:33] 2025-11-20 02:07:33,596 [wrapper] Pilot exit status: 0
[2025-11-19 21:07:33] 2025-11-20 02:07:33,626 [wrapper] pandaids: 6891572027
[2025-11-19 21:07:33] 2025-11-20 02:07:33,726 [wrapper] cleanup supervisor_pilot  690231 1993909
[2025-11-19 21:07:33] 2025-11-20 02:07:33,731 [wrapper] Test setup, not cleaning
[2025-11-19 21:07:33] 2025-11-20 02:07:33,735 [wrapper] apfmon messages muted
[2025-11-19 21:07:33] 2025-11-20 02:07:33,738 [wrapper] ==== wrapper stdout END ====
[2025-11-19 21:07:33] 2025-11-20 02:07:33,740 [wrapper] ==== wrapper stderr END ====
[2025-11-19 21:07:33]  *** Error codes and diagnostics ***
[2025-11-19 21:07:33]     "exeErrorCode": 0,
[2025-11-19 21:07:33]     "exeErrorDiag": "",
[2025-11-19 21:07:33]     "pilotErrorCode": 0,
[2025-11-19 21:07:33]     "pilotErrorDiag": "",
[2025-11-19 21:07:33]  *** Listing of results directory ***
[2025-11-19 21:07:33] total 1333504
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:47 pilot3.tar.gz
[2025-11-19 21:07:33] -rwx------. 1 boincer umatlas     36292 Nov 18 11:14 runpilot2-wrapper.sh
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 11:14 queuedata.json
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 21:07:33] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:01 run_atlas
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:01 job.xml
[2025-11-19 21:07:33] -rw-r--r--. 2 boincer umatlas 409579779 Nov 19 00:01 EVNT.47493065._000322.pool.root.1
[2025-11-19 21:07:33] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:01 start_atlas.sh
[2025-11-19 21:07:33] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:01 shared
[2025-11-19 21:07:33] -rw-r--r--. 2 boincer umatlas    590089 Nov 19 00:01 input.tar.gz
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:01 boinc_lockfile
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas      2772 Nov 19 00:01 pandaJob.out
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas    992806 Nov 19 00:02 agis_schedconf.cvmfs.json
[2025-11-19 21:07:33] drwx------. 5 boincer umatlas      4096 Nov 19 00:02 pilot3
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas       533 Nov 19 20:37 boinc_task_state.xml
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas      6949 Nov 19 21:04 init_data.xml
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas 926539587 Nov 19 21:05 HITS.47493068._003212.pool.root.1
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas      1076 Nov 19 21:06 memory_monitor_summary.json
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas   1525063 Nov 19 21:06 agis_ddmendpoints.agis.ALL.json
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas   2801651 Nov 19 21:06 log.47493068._003212.job.log.tgz.1
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas      8657 Nov 19 21:06 heartbeat.json
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas        95 Nov 19 21:07 pilot_heartbeat.json
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas      8192 Nov 19 21:07 boinc_mmap_file
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas        29 Nov 19 21:07 wrapper_checkpoint.txt
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas      4825 Nov 19 21:07 pilotlog.txt
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas   9931500 Nov 19 21:07 log.47493068._003212.job.log.1
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas       353 Nov 19 21:07 output.list
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas       620 Nov 19 21:07 runtime_log
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas  12748800 Nov 19 21:07 result.tar.gz
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas      8701 Nov 19 21:07 runtime_log.err
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas       666 Nov 19 21:07 QyiLDmjWdf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmaSFKDm7KW1Po.diag
[2025-11-19 21:07:33] -rw-r--r--. 1 boincer umatlas     21883 Nov 19 21:07 stderr.txt
[2025-11-19 21:07:33] HITS file was successfully produced:
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas 926539587 Nov 19 21:05 shared/HITS.pool.root.1
[2025-11-19 21:07:33]  *** Contents of shared directory: ***
[2025-11-19 21:07:33] total 1317864
[2025-11-19 21:07:33] -rw-r--r--. 2 boincer umatlas 409579779 Nov 19 00:01 ATLAS.root_0
[2025-11-19 21:07:33] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:01 start_atlas.sh
[2025-11-19 21:07:33] -rw-r--r--. 2 boincer umatlas    590089 Nov 19 00:01 input.tar.gz
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas 926539587 Nov 19 21:05 HITS.pool.root.1
[2025-11-19 21:07:33] -rw-------. 1 boincer umatlas  12748800 Nov 19 21:07 result.tar.gz
21:07:55 (1984579): run_atlas exited; CPU time 226540.011208
21:07:55 (1984579): called boinc_finish(0)

</stderr_txt>
]]>

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