Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:35:07 (2760469): wrapper (7.7.26015): starting
05:35:07 (2760469): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 05:35:07] Arguments: --nthreads 3
[2025-11-19 05:35:07] Threads: 3
[2025-11-19 05:35:07] Checking for CVMFS
[2025-11-19 05:35:07] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 05:35:07] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 05:35:07] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 05:35:07] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 05:35:07] 2.9.2.0 4099368 616 74956 153030 2 88 34216772 36864000 0 130560 0 8580983 99.983 157247 3794 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 05:35:07] CVMFS is ok
[2025-11-19 05:35:07] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 05:35:07] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 05:35:07] Further information can be found at the LHC@home message board.
[2025-11-19 05:35:07] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 05:35:07] Checking for apptainer binary...
[2025-11-19 05:35:07] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 05:35:07] Running /usr/bin/apptainer --version
[2025-11-19 05:35:07] apptainer version 1.4.1-1.1
[2025-11-19 05:35:07] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 05:35:08] thA335
[2025-11-19 05:35:08] apptainer works
[2025-11-19 05:35:08] Set ATHENA_PROC_NUMBER=3
[2025-11-19 05:35:08] Set ATHENA_CORE_NUMBER=3
[2025-11-19 05:35:08] Starting ATLAS job with PandaID=6891592057
[2025-11-19 05:35:08] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 05:39:26]  *** The last 200 lines of the pilot log: ***
[2025-11-19 05:39:26] 2025-11-19 04:38:33,130 | INFO     | executing command: cat /etc/os-release
[2025-11-19 05:39:26] 2025-11-19 04:38:33,153 | INFO     | cat /etc/os-release:
[2025-11-19 05:39:26] NAME="CentOS Linux"
[2025-11-19 05:39:26] VERSION="7 (Core)"
[2025-11-19 05:39:26] ID="centos"
[2025-11-19 05:39:26] ID_LIKE="rhel fedora"
[2025-11-19 05:39:26] VERSION_ID="7"
[2025-11-19 05:39:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 05:39:26] ANSI_COLOR="0;31"
[2025-11-19 05:39:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 05:39:26] HOME_URL="https://www.centos.org/"
[2025-11-19 05:39:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 05:39:26] 
[2025-11-19 05:39:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 05:39:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 05:39:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 05:39:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 05:39:26] 
[2025-11-19 05:39:26] 2025-11-19 04:38:33,154 | INFO     | ***************************************
[2025-11-19 05:39:26] 2025-11-19 04:38:33,657 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-19 05:39:26] 2025-11-19 04:38:33,671 | INFO     | sufficient remaining disk space (827845509120 B)
[2025-11-19 05:39:26] 2025-11-19 04:38:33,672 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 05:39:26] 2025-11-19 04:38:33,672 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 05:39:26] 2025-11-19 04:38:33,672 | INFO     | update_server=False
[2025-11-19 05:39:26] 2025-11-19 04:38:33,672 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 05:39:26] 2025-11-19 04:38:33,672 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 05:39:26] 2025-11-19 04:38:33,672 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 05:39:26] 2025-11-19 04:38:33,672 | INFO     | aborting loop
[2025-11-19 05:39:26] 2025-11-19 04:38:33,934 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 05:39:26] 2025-11-19 04:38:33,945 | INFO     | all job control threads have been joined
[2025-11-19 05:39:26] 2025-11-19 04:38:34,678 | INFO     | [job] queue monitor thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:34,678 | INFO     | [job] retrieve thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:34,679 | INFO     | [job] job monitor thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:34,694 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:34,752 | INFO     | all data control threads have been joined
[2025-11-19 05:39:26] 2025-11-19 04:38:34,951 | INFO     | [job] control thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:35,044 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:35,072 | INFO     | all payload control threads have been joined
[2025-11-19 05:39:26] 2025-11-19 04:38:35,691 | INFO     | [data] copytool_in thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:35,695 | INFO     | [payload] validate_post thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:35,758 | INFO     | [data] control thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:35,904 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:35,940 | INFO     | [data] copytool_out thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:36,044 | INFO     | [job] validate thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:36,078 | INFO     | [payload] control thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:36,138 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:36,220 | INFO     | [payload] failed_post thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:38:36,739 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 05:39:26] 2025-11-19 04:38:40,746 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 05:39:26] 2025-11-19 04:39:04,205 | INFO     | PID=2764199 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 05:39:26] 2025-11-19 04:39:04,205 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 05:39:26] 2025-11-19 04:39:04,205 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 05:39:26] 2025-11-19 04:39:04,205 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 05:39:26] 2025-11-19 04:39:19,348 | INFO     | [monitor] cgroup control has ended
[2025-11-19 05:39:26] 2025-11-19 04:39:20,488 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140322580293440)>', '<ExcThread(monitor, started 140321816049408)>']
[2025-11-19 05:39:26] 2025-11-19 04:39:21,295 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 05:39:26] 2025-11-19 04:39:21,295 | INFO     | [monitor] control thread has ended
[2025-11-19 05:39:26] 2025-11-19 04:39:25,514 | INFO     | all workflow threads have been joined
[2025-11-19 05:39:26] 2025-11-19 04:39:25,515 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 05:39:26] 2025-11-19 04:39:25,516 | INFO     | traces error code: 0
[2025-11-19 05:39:26] 2025-11-19 04:39:25,516 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 05:39:26] 2025-11-19 04:39:25,563 [wrapper] ==== pilot stdout END ====
[2025-11-19 05:39:26] 2025-11-19 04:39:25,567 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 05:39:26] 2025-11-19 04:39:25,570 [wrapper] pilotpid: 2764199
[2025-11-19 05:39:26] 2025-11-19 04:39:25,573 [wrapper] Pilot exit status: 0
[2025-11-19 05:39:26] 2025-11-19 04:39:25,579 [wrapper] pandaids: 6891592057
[2025-11-19 05:39:26] 2025-11-19 04:39:25,595 [wrapper] cleanup supervisor_pilot 2764206 2764200
[2025-11-19 05:39:26] 2025-11-19 04:39:25,598 [wrapper] Test setup, not cleaning
[2025-11-19 05:39:26] 2025-11-19 04:39:25,600 [wrapper] apfmon messages muted
[2025-11-19 05:39:26] 2025-11-19 04:39:25,603 [wrapper] ==== wrapper stdout END ====
[2025-11-19 05:39:26] 2025-11-19 04:39:25,605 [wrapper] ==== wrapper stderr END ====
[2025-11-19 05:39:26]  *** Error codes and diagnostics ***
[2025-11-19 05:39:26]     "exeErrorCode": 65,
[2025-11-19 05:39:26]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 05:39:26]     "pilotErrorCode": 1305,
[2025-11-19 05:39:26]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 05:39:26]  *** Listing of results directory ***
[2025-11-19 05:39:26] total 402152
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc    576529 Nov 18 18:59 pilot3.tar.gz
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:18 queuedata.json
[2025-11-19 05:39:26] -rwx------ 1 boinc boinc     36292 Nov 18 19:18 runpilot2-wrapper.sh
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc       100 Nov 19 05:35 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 05:39:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 05:35 run_atlas
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc       105 Nov 19 05:35 job.xml
[2025-11-19 05:39:26] -rw-r--r-- 2 boinc boinc 407604506 Nov 19 05:35 EVNT.47493065._000637.pool.root.1
[2025-11-19 05:39:26] -rw-r--r-- 2 boinc boinc    590101 Nov 19 05:35 input.tar.gz
[2025-11-19 05:39:26] -rw-r--r-- 2 boinc boinc     15120 Nov 19 05:35 start_atlas.sh
[2025-11-19 05:39:26] drwxrwx--x 2 boinc boinc      4096 Nov 19 05:35 shared
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc         0 Nov 19 05:35 boinc_setup_complete
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc      6194 Nov 19 05:35 init_data.xml
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc         0 Nov 19 05:35 boinc_lockfile
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc      2773 Nov 19 05:35 pandaJob.out
[2025-11-19 05:39:26] -rw------- 1 boinc boinc    992806 Nov 19 05:35 agis_schedconf.cvmfs.json
[2025-11-19 05:39:26] -rw------- 1 boinc boinc   1525063 Nov 19 05:35 agis_ddmendpoints.agis.ALL.json
[2025-11-19 05:39:26] drwx------ 5 boinc boinc      4096 Nov 19 05:35 pilot3
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc       523 Nov 19 05:35 boinc_task_state.xml
[2025-11-19 05:39:26] -rw------- 1 boinc boinc       982 Nov 19 05:36 memory_monitor_summary.json
[2025-11-19 05:39:26] -rw------- 1 boinc boinc     55926 Nov 19 05:36 log.47493068._005864.job.log.tgz.1
[2025-11-19 05:39:26] -rw------- 1 boinc boinc        95 Nov 19 05:38 pilot_heartbeat.json
[2025-11-19 05:39:26] -rw------- 1 boinc boinc      8396 Nov 19 05:38 heartbeat.json
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc      8192 Nov 19 05:39 boinc_mmap_file
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc        23 Nov 19 05:39 wrapper_checkpoint.txt
[2025-11-19 05:39:26] -rw------- 1 boinc boinc      4752 Nov 19 05:39 pilotlog.txt
[2025-11-19 05:39:26] -rw------- 1 boinc boinc     91772 Nov 19 05:39 log.47493068._005864.job.log.1
[2025-11-19 05:39:26] -rw------- 1 boinc boinc       186 Nov 19 05:39 output.list
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc       620 Nov 19 05:39 runtime_log
[2025-11-19 05:39:26] -rw------- 1 boinc boinc    163840 Nov 19 05:39 result.tar.gz
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc      8624 Nov 19 05:39 runtime_log.err
[2025-11-19 05:39:26] -rw------- 1 boinc boinc       649 Nov 19 05:39 LtXMDm9Sff8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmEgFKDmLVBeNm.diag
[2025-11-19 05:39:26] -rw-r--r-- 1 boinc boinc      9260 Nov 19 05:39 stderr.txt
[2025-11-19 05:39:26] No HITS result produced
[2025-11-19 05:39:26]  *** Contents of shared directory: ***
[2025-11-19 05:39:26] total 398812
[2025-11-19 05:39:26] -rw-r--r-- 2 boinc boinc 407604506 Nov 19 05:35 ATLAS.root_0
[2025-11-19 05:39:26] -rw-r--r-- 2 boinc boinc    590101 Nov 19 05:35 input.tar.gz
[2025-11-19 05:39:26] -rw-r--r-- 2 boinc boinc     15120 Nov 19 05:35 start_atlas.sh
[2025-11-19 05:39:26] -rw------- 1 boinc boinc    163840 Nov 19 05:39 result.tar.gz
05:39:27 (2760469): run_atlas exited; CPU time 31.062179
05:39:27 (2760469): called boinc_finish(0)

</stderr_txt>
]]>

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