Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
16:57:18 (530820): wrapper (7.7.26015): starting
16:57:18 (530820): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 16:57:18] Arguments: --nthreads 4
[2025-11-20 16:57:18] Threads: 4
[2025-11-20 16:57:18] Checking for CVMFS
[2025-11-20 16:57:18] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 16:57:18] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 16:57:18] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 16:57:18] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 16:57:18] 2.9.2.0 98111 2885 79656 153086 2 16 34554096 36864001 0 130560 0 1193299 99.822 408919 10024 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 16:57:18] CVMFS is ok
[2025-11-20 16:57:18] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 16:57:18] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 16:57:18] Further information can be found at the LHC@home message board.
[2025-11-20 16:57:18] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 16:57:18] Checking for apptainer binary...
[2025-11-20 16:57:18] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 16:57:18] Running /usr/bin/apptainer --version
[2025-11-20 16:57:18] apptainer version 1.4.1-1.1
[2025-11-20 16:57:18] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 16:57:19] thA383a
[2025-11-20 16:57:19] apptainer works
[2025-11-20 16:57:19] Set ATHENA_PROC_NUMBER=4
[2025-11-20 16:57:19] Set ATHENA_CORE_NUMBER=4
[2025-11-20 16:57:19] Starting ATLAS job with PandaID=6891571792
[2025-11-20 16:57:19] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 17:06:33]  *** The last 200 lines of the pilot log: ***
[2025-11-20 17:06:33] 
[2025-11-20 17:06:33] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 17:06:33] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 17:06:33] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 17:06:33] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 17:06:33] 
[2025-11-20 17:06:33] 2025-11-20 16:06:02,779 | INFO     | ***************************************
[2025-11-20 17:06:33] 2025-11-20 16:06:03,282 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 17:06:33] 2025-11-20 16:06:03,301 | INFO     | sufficient remaining disk space (222255120384 B)
[2025-11-20 17:06:33] 2025-11-20 16:06:03,302 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 17:06:33] 2025-11-20 16:06:03,302 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 17:06:33] 2025-11-20 16:06:03,302 | INFO     | update_server=False
[2025-11-20 17:06:33] 2025-11-20 16:06:03,302 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 17:06:33] 2025-11-20 16:06:03,302 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:06:33] 2025-11-20 16:06:03,302 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 17:06:33] 2025-11-20 16:06:03,302 | INFO     | aborting loop
[2025-11-20 17:06:33] 2025-11-20 16:06:04,043 | INFO     | all data control threads have been joined
[2025-11-20 17:06:33] 2025-11-20 16:06:04,062 | INFO     | all payload control threads have been joined
[2025-11-20 17:06:33] 2025-11-20 16:06:04,307 | INFO     | [job] queue monitor thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:04,308 | INFO     | [job] retrieve thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:04,308 | INFO     | [job] job monitor thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:04,376 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:04,506 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 17:06:33] 2025-11-20 16:06:04,521 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 17:06:33] 2025-11-20 16:06:04,534 | INFO     | [data] copytool_in thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:04,792 | INFO     | all job control threads have been joined
[2025-11-20 17:06:33] 2025-11-20 16:06:05,048 | INFO     | [data] control thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,068 | INFO     | [payload] control thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,107 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,332 | INFO     | [job] validate thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,391 | INFO     | [payload] failed_post thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,444 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,527 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,653 | INFO     | [payload] validate_post thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:05,798 | INFO     | [job] control thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:06,527 | INFO     | [data] copytool_out thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:08,513 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 17:06:33] 2025-11-20 16:06:26,885 | INFO     | [monitor] cgroup control has ended
[2025-11-20 17:06:33] 2025-11-20 16:06:27,795 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139824699967296)>', '<ExcThread(monitor, started 139823910209280)>']
[2025-11-20 17:06:33] 2025-11-20 16:06:32,821 | INFO     | all workflow threads have been joined
[2025-11-20 17:06:33] 2025-11-20 16:06:32,821 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 17:06:33] 2025-11-20 16:06:32,821 | INFO     | traces error code: 0
[2025-11-20 17:06:33] 2025-11-20 16:06:32,821 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 17:06:33] 2025-11-20 16:06:33,638 | INFO     | PID=534609 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 17:06:33] 2025-11-20 16:06:33,639 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 17:06:33] 2025-11-20 16:06:33,639 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 17:06:33] 2025-11-20 16:06:33,639 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 17:06:33] 2025-11-20 16:06:33,639 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 17:06:33] 2025-11-20 16:06:33,639 | INFO     | [monitor] control thread has ended
[2025-11-20 17:06:33] 2025-11-20 16:06:33,714 [wrapper] ==== pilot stdout END ====
[2025-11-20 17:06:33] 2025-11-20 16:06:33,718 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 17:06:33] 2025-11-20 16:06:33,722 [wrapper] pilotpid: 534609
[2025-11-20 17:06:33] 2025-11-20 16:06:33,726 [wrapper] Pilot exit status: 0
[2025-11-20 17:06:33] 2025-11-20 16:06:33,738 [wrapper] pandaids: 6891571792
[2025-11-20 17:06:33] 2025-11-20 16:06:33,760 [wrapper] cleanup supervisor_pilot  534615 534610
[2025-11-20 17:06:33] 2025-11-20 16:06:33,764 [wrapper] Test setup, not cleaning
[2025-11-20 17:06:33] 2025-11-20 16:06:33,768 [wrapper] apfmon messages muted
[2025-11-20 17:06:33] 2025-11-20 16:06:33,772 [wrapper] ==== wrapper stdout END ====
[2025-11-20 17:06:33] 2025-11-20 16:06:33,775 [wrapper] ==== wrapper stderr END ====
[2025-11-20 17:06:33]  *** Error codes and diagnostics ***
[2025-11-20 17:06:33]     "exeErrorCode": 65,
[2025-11-20 17:06:33]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-20 17:06:33]     "pilotErrorCode": 1305,
[2025-11-20 17:06:33]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (1); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 0; Run: unknown; Evt: unknown; Current algorithm",
[2025-11-20 17:06:33]  *** Listing of results directory ***
[2025-11-20 17:06:33] total 402668
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:47 pilot3.tar.gz
[2025-11-20 17:06:33] -rwx------ 1 boinc boinc     36292 Nov 18 17:01 runpilot2-wrapper.sh
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc      5112 Nov 18 17:01 queuedata.json
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc       100 Nov 20 16:57 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 17:06:33] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 16:57 run_atlas
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc       105 Nov 20 16:57 job.xml
[2025-11-20 17:06:33] -rw-r--r-- 2 boinc boinc 407984903 Nov 20 16:57 EVNT.47493065._000301.pool.root.1
[2025-11-20 17:06:33] -rw-r--r-- 2 boinc boinc    590095 Nov 20 16:57 input.tar.gz
[2025-11-20 17:06:33] -rw-r--r-- 2 boinc boinc     15120 Nov 20 16:57 start_atlas.sh
[2025-11-20 17:06:33] drwxrwx--x 2 boinc boinc      4096 Nov 20 16:57 shared
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc         0 Nov 20 16:57 boinc_setup_complete
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc      6377 Nov 20 16:57 init_data.xml
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc         0 Nov 20 16:57 boinc_lockfile
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc      2773 Nov 20 16:57 pandaJob.out
[2025-11-20 17:06:33] -rw------- 1 boinc boinc    989440 Nov 20 16:57 agis_schedconf.cvmfs.json
[2025-11-20 17:06:33] -rw------- 1 boinc boinc   1526164 Nov 20 16:57 agis_ddmendpoints.agis.ALL.json
[2025-11-20 17:06:33] drwx------ 5 boinc boinc      4096 Nov 20 16:57 pilot3
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc       526 Nov 20 17:03 boinc_task_state.xml
[2025-11-20 17:06:33] -rw------- 1 boinc boinc      1002 Nov 20 17:03 memory_monitor_summary.json
[2025-11-20 17:06:33] -rw------- 1 boinc boinc     87927 Nov 20 17:04 log.47493068._003009.job.log.tgz.1
[2025-11-20 17:06:33] -rw------- 1 boinc boinc      9100 Nov 20 17:06 heartbeat.json
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc      8192 Nov 20 17:06 boinc_mmap_file
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc        23 Nov 20 17:06 wrapper_checkpoint.txt
[2025-11-20 17:06:33] -rw------- 1 boinc boinc       746 Nov 20 17:06 pilotlog.txt
[2025-11-20 17:06:33] -rw------- 1 boinc boinc        95 Nov 20 17:06 pilot_heartbeat.json
[2025-11-20 17:06:33] -rw------- 1 boinc boinc    133902 Nov 20 17:06 log.47493068._003009.job.log.1
[2025-11-20 17:06:33] -rw------- 1 boinc boinc       186 Nov 20 17:06 output.list
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc       620 Nov 20 17:06 runtime_log
[2025-11-20 17:06:33] -rw------- 1 boinc boinc    245760 Nov 20 17:06 result.tar.gz
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc      8629 Nov 20 17:06 runtime_log.err
[2025-11-20 17:06:33] -rw------- 1 boinc boinc       651 Nov 20 17:06 NrdNDmSKdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmyiFKDmEDXWNo.diag
[2025-11-20 17:06:33] -rw-r--r-- 1 boinc boinc      8728 Nov 20 17:06 stderr.txt
[2025-11-20 17:06:33] No HITS result produced
[2025-11-20 17:06:33]  *** Contents of shared directory: ***
[2025-11-20 17:06:33] total 399264
[2025-11-20 17:06:33] -rw-r--r-- 2 boinc boinc 407984903 Nov 20 16:57 ATLAS.root_0
[2025-11-20 17:06:33] -rw-r--r-- 2 boinc boinc    590095 Nov 20 16:57 input.tar.gz
[2025-11-20 17:06:33] -rw-r--r-- 2 boinc boinc     15120 Nov 20 16:57 start_atlas.sh
[2025-11-20 17:06:33] -rw------- 1 boinc boinc    245760 Nov 20 17:06 result.tar.gz
17:06:35 (530820): run_atlas exited; CPU time 55.303014
17:06:35 (530820): called boinc_finish(0)

</stderr_txt>
]]>

©2025 CERN