Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
07:25:28 (470259): wrapper (7.7.26015): starting
07:25:28 (470259): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 07:25:28] Arguments: --nthreads 4
[2025-11-20 07:25:28] Threads: 4
[2025-11-20 07:25:28] Checking for CVMFS
[2025-11-20 07:25:28] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 07:25:28] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 07:25:28] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 07:25:28] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 07:25:28] 2.13.3.0 32779 2954 51608 153074 0 81 2680065 4096000 63 130560 31 13671173 99.961 390024 898 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-20 07:25:28] CVMFS is ok
[2025-11-20 07:25:28] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 07:25:28] Checking for apptainer binary...
[2025-11-20 07:25:28] apptainer is not installed, using version from CVMFS
[2025-11-20 07:25:28] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 07:25:29] senture-c621e-l
[2025-11-20 07:25:29] apptainer works
[2025-11-20 07:25:29] Set ATHENA_PROC_NUMBER=4
[2025-11-20 07:25:29] Set ATHENA_CORE_NUMBER=4
[2025-11-20 07:25:29] Starting ATLAS job with PandaID=6891576679
[2025-11-20 07:25:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/2 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:42:20]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:42:20] 2025-11-20 23:41:14,772 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0059999999967
[2025-11-20 23:42:20] 2025-11-20 23:41:14,783 | INFO     | using path: /var/lib/boinc-client/slots/2/PanDA_Pilot-6891576679/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,783 | INFO     | extracted standard info from prmon json
[2025-11-20 23:42:20] 2025-11-20 23:41:14,784 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:42:20] 2025-11-20 23:41:14,784 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:42:20] 2025-11-20 23:41:14,799 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:42:20] 2025-11-20 23:41:14,800 | INFO     | sum of square deviations: 274341638877.9962
[2025-11-20 23:42:20] 2025-11-20 23:41:14,818 | INFO     | sum of deviations: 704301865634.21
[2025-11-20 23:42:20] 2025-11-20 23:41:14,818 | INFO     | mean x: 1763652810.5020833
[2025-11-20 23:42:20] 2025-11-20 23:41:14,818 | INFO     | mean y: 2241745.3958333335
[2025-11-20 23:42:20] 2025-11-20 23:41:14,818 | INFO     | intersect: -4525484960.064416
[2025-11-20 23:42:20] 2025-11-20 23:41:14,819 | INFO     | chi2: 5.429433601424412
[2025-11-20 23:42:20] 2025-11-20 23:41:14,821 | INFO     | sum of square deviations: 270077336277.99545
[2025-11-20 23:42:20] 2025-11-20 23:41:14,837 | INFO     | sum of deviations: 969984814337.3783
[2025-11-20 23:42:20] 2025-11-20 23:41:14,837 | INFO     | mean x: 1763652658.0020943
[2025-11-20 23:42:20] 2025-11-20 23:41:14,837 | INFO     | mean y: 2251247.309947644
[2025-11-20 23:42:20] 2025-11-20 23:41:14,837 | INFO     | intersect: -6331920733.218304
[2025-11-20 23:42:20] 2025-11-20 23:41:14,838 | INFO     | chi2: 1.982433003983965
[2025-11-20 23:42:20] 2025-11-20 23:41:14,838 | INFO     | current chi2=1.982433003983965 (change=63.4872962906504 %)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,839 | INFO     | sum of square deviations: 265857453115.49612
[2025-11-20 23:42:20] 2025-11-20 23:41:14,856 | INFO     | sum of deviations: 999190228356.684
[2025-11-20 23:42:20] 2025-11-20 23:41:14,856 | INFO     | mean x: 1763652505.5021052
[2025-11-20 23:42:20] 2025-11-20 23:41:14,856 | INFO     | mean y: 2252299.407368421
[2025-11-20 23:42:20] 2025-11-20 23:41:14,856 | INFO     | intersect: -6626203397.672244
[2025-11-20 23:42:20] 2025-11-20 23:41:14,857 | INFO     | chi2: 1.8536012711168657
[2025-11-20 23:42:20] 2025-11-20 23:41:14,858 | INFO     | current chi2=1.8536012711168657 (change=6.49866767795909 %)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,858 | INFO     | right removable region: 949
[2025-11-20 23:42:20] 2025-11-20 23:41:14,859 | INFO     | sum of square deviations: 270077335057.99548
[2025-11-20 23:42:20] 2025-11-20 23:41:14,875 | INFO     | sum of deviations: 543322892450.4895
[2025-11-20 23:42:20] 2025-11-20 23:41:14,876 | INFO     | mean x: 1763652963.0020943
[2025-11-20 23:42:20] 2025-11-20 23:41:14,876 | INFO     | mean y: 2247491.255497382
[2025-11-20 23:42:20] 2025-11-20 23:41:14,876 | INFO     | intersect: -3545747489.261495
[2025-11-20 23:42:20] 2025-11-20 23:41:14,877 | INFO     | chi2: 3.744032990916434
[2025-11-20 23:42:20] 2025-11-20 23:41:14,877 | INFO     | current chi2=3.744032990916434 (change=31.04192323239413 %)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,878 | INFO     | sum of square deviations: 265857450675.49612
[2025-11-20 23:42:20] 2025-11-20 23:41:14,895 | INFO     | sum of deviations: 506212604303.6161
[2025-11-20 23:42:20] 2025-11-20 23:41:14,895 | INFO     | mean x: 1763653115.5021052
[2025-11-20 23:42:20] 2025-11-20 23:41:14,895 | INFO     | mean y: 2248831.942105263
[2025-11-20 23:42:20] 2025-11-20 23:41:14,895 | INFO     | intersect: -3355879497.4242682
[2025-11-20 23:42:20] 2025-11-20 23:41:14,896 | INFO     | chi2: 3.7087297348363135
[2025-11-20 23:42:20] 2025-11-20 23:41:14,896 | INFO     | current chi2=3.7087297348363135 (change=0.9429205395831537 %)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,897 | INFO     | left removable region: 20
[2025-11-20 23:42:20] 2025-11-20 23:41:14,898 | INFO     | sum of square deviations: 248613750739.9954
[2025-11-20 23:42:20] 2025-11-20 23:41:14,913 | INFO     | sum of deviations: 739011032681.427
[2025-11-20 23:42:20] 2025-11-20 23:41:14,913 | INFO     | mean x: 1763653085.002153
[2025-11-20 23:42:20] 2025-11-20 23:41:14,913 | INFO     | mean y: 2261738.7868675995
[2025-11-20 23:42:20] 2025-11-20 23:41:14,914 | INFO     | intersect: -5240244292.194103
[2025-11-20 23:42:20] 2025-11-20 23:41:14,915 | INFO     | chi2: 0.08507847092162998
[2025-11-20 23:42:20] 2025-11-20 23:41:14,915 | INFO     | current memory leak: 2.97 B/s (using 929 data points, chi2=0.09)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,916 | INFO     | could have reported an average CPU frequency of 2600 MHz (36 samples)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,916 | INFO     | ..............................
[2025-11-20 23:42:20] 2025-11-20 23:41:14,916 | INFO     | . Timing measurements:
[2025-11-20 23:42:20] 2025-11-20 23:41:14,916 | INFO     | . get job = 0 s
[2025-11-20 23:42:20] 2025-11-20 23:41:14,916 | INFO     | . initial setup = 1 s
[2025-11-20 23:42:20] 2025-11-20 23:41:14,916 | INFO     | . payload setup = 4 s
[2025-11-20 23:42:20] 2025-11-20 23:41:14,917 | INFO     | . stage-in = 0 s
[2025-11-20 23:42:20] 2025-11-20 23:41:14,917 | INFO     | . payload execution = 58504 s
[2025-11-20 23:42:20] 2025-11-20 23:41:14,917 | INFO     | . stage-out = 2 s
[2025-11-20 23:42:20] 2025-11-20 23:41:14,917 | INFO     | . log creation = 0 s
[2025-11-20 23:42:20] 2025-11-20 23:41:14,917 | INFO     | ..............................
[2025-11-20 23:42:20] 2025-11-20 23:41:14,954 | INFO     | time since job start (58537s) is within the limit (172800.0s)
[2025-11-20 23:42:20] 2025-11-20 23:41:14,954 | INFO     | 58539s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | 
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | job summary report
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | --------------------------------------------------
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | PanDA job id: 6891576679
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | task id: 47493068
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | errors: (none)
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | pilot state: finished 
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | transexitcode: 0
[2025-11-20 23:42:20] 2025-11-20 23:41:15,002 | INFO     | exeerrorcode: 0
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | exeerrordiag: 
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | exitcode: 0
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | exitmsg: OK
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | cpuconsumptiontime: 227426 s
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | nevents: 1000
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | neventsw: 0
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | pid: 608209
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | pgrp: 608209
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | corecount: 4
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | event service: False
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | sizes: {0: 2297207, 4: 2297469, 11: 2297497, 58512: 2348776, 58513: 2348775, 58515: 2359435, 58518: 2359619, 58523: 2359865}
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | --------------------------------------------------
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | 
[2025-11-20 23:42:20] 2025-11-20 23:41:15,003 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/2
[2025-11-20 23:42:20] 2025-11-20 23:41:15,027 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,027 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,027 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,027 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:42:20] 2025-11-20 23:41:15,028 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,029 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:42:20] 2025-11-20 23:41:15,029 | INFO     | job 6891576679 has completed (purged errors)
[2025-11-20 23:42:20] 2025-11-20 23:41:15,029 | INFO     | overall cleanup function is called
[2025-11-20 23:42:20] 2025-11-20 23:41:16,041 | INFO     | --- collectZombieJob: --- 10, [608209]
[2025-11-20 23:42:20] 2025-11-20 23:41:16,041 | INFO     | zombie collector waiting for pid 608209
[2025-11-20 23:42:20] 2025-11-20 23:41:16,041 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:42:20] 2025-11-20 23:41:16,041 | INFO     | collected zombie processes
[2025-11-20 23:42:20] 2025-11-20 23:41:16,041 | INFO     | will attempt to kill all subprocesses of pid=608209
[2025-11-20 23:42:20] 2025-11-20 23:41:16,361 | INFO     | process IDs to be killed: [608209] (in reverse order)
[2025-11-20 23:42:20] 2025-11-20 23:41:16,510 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:42:20] 2025-11-20 23:41:16,511 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:42:20] 2025-11-20 23:41:16,520 | INFO     | did not find any defunct processes belonging to 608209
[2025-11-20 23:42:20] 2025-11-20 23:41:16,529 | INFO     | did not find any defunct processes belonging to 608209
[2025-11-20 23:42:20] 2025-11-20 23:41:16,531 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:42:20] 2025-11-20 23:41:16,531 | INFO     | ready for new job
[2025-11-20 23:42:20] 2025-11-20 23:41:16,531 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:42:20] 2025-11-20 23:41:16,536 | INFO     | ***************************************
[2025-11-20 23:42:20] 2025-11-20 23:41:16,536 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:42:20] 2025-11-20 23:41:16,536 | INFO     | ***************************************
[2025-11-20 23:42:20] 2025-11-20 23:41:16,536 | INFO     | 
[2025-11-20 23:42:20] 2025-11-20 23:41:16,539 | INFO     | pilot is running in a VM
[2025-11-20 23:42:20] 2025-11-20 23:41:16,539 | INFO     | architecture information:
[2025-11-20 23:42:20] 2025-11-20 23:41:16,540 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:42:20] 2025-11-20 23:41:16,558 | INFO     | cat /etc/os-release:
[2025-11-20 23:42:20] NAME="CentOS Linux"
[2025-11-20 23:42:20] VERSION="7 (Core)"
[2025-11-20 23:42:20] ID="centos"
[2025-11-20 23:42:20] ID_LIKE="rhel fedora"
[2025-11-20 23:42:20] VERSION_ID="7"
[2025-11-20 23:42:20] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:42:20] ANSI_COLOR="0;31"
[2025-11-20 23:42:20] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:42:20] HOME_URL="https://www.centos.org/"
[2025-11-20 23:42:20] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:42:20] 
[2025-11-20 23:42:20] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:42:20] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:42:20] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:42:20] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:42:20] 
[2025-11-20 23:42:20] 2025-11-20 23:41:16,558 | INFO     | ***************************************
[2025-11-20 23:42:20] 2025-11-20 23:41:17,061 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/2
[2025-11-20 23:42:20] 2025-11-20 23:41:17,082 | INFO     | sufficient remaining disk space (83895517184 B)
[2025-11-20 23:42:20] 2025-11-20 23:41:17,082 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:42:20] 2025-11-20 23:41:17,083 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:42:20] 2025-11-20 23:41:17,083 | INFO     | update_server=False
[2025-11-20 23:42:20] 2025-11-20 23:41:17,083 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:42:20] 2025-11-20 23:41:17,176 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:42:20] 2025-11-20 23:41:17,726 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:42:20] 2025-11-20 23:41:17,726 | INFO     | aborting loop
[2025-11-20 23:42:20] 2025-11-20 23:41:17,975 | INFO     | all data control threads have been joined
[2025-11-20 23:42:20] 2025-11-20 23:41:18,088 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:18,160 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:18,254 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:18,285 | INFO     | all payload control threads have been joined
[2025-11-20 23:42:20] 2025-11-20 23:41:18,290 | INFO     | all job control threads have been joined
[2025-11-20 23:42:20] 2025-11-20 23:41:18,483 | INFO     | [job] validate thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:18,525 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:18,595 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:18,732 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:18,980 | INFO     | [data] control thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:19,180 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:19,291 | INFO     | [payload] control thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:19,296 | INFO     | [job] control thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:19,463 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:19,531 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:20,011 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:42:20] 2025-11-20 23:41:20,560 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:42:20] 2025-11-20 23:41:21,017 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:24,566 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:28,045 | INFO     | job.realtimelogging is not enabled
[2025-11-20 23:42:20] 2025-11-20 23:41:29,050 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:42:20] 2025-11-20 23:41:48,395 | INFO     | PID=496293 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 23:42:20] 2025-11-20 23:41:48,395 | INFO     | .. there are 16 such processes running
[2025-11-20 23:42:20] 2025-11-20 23:41:48,395 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:42:20] 2025-11-20 23:41:48,395 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:42:20] 2025-11-20 23:41:48,395 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:42:20] 2025-11-20 23:42:14,384 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:42:20] 2025-11-20 23:42:14,942 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 131557628430144)>', '<ExcThread(monitor, started 131557079619328)>']
[2025-11-20 23:42:20] 2025-11-20 23:42:15,516 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:42:20] 2025-11-20 23:42:15,517 | INFO     | [monitor] control thread has ended
[2025-11-20 23:42:20] 2025-11-20 23:42:19,956 | INFO     | all workflow threads have been joined
[2025-11-20 23:42:20] 2025-11-20 23:42:19,956 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:42:20] 2025-11-20 23:42:19,956 | INFO     | traces error code: 0
[2025-11-20 23:42:20] 2025-11-20 23:42:19,956 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:42:20] 2025-11-20 23:42:20,119 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:42:20] 2025-11-20 23:42:20,123 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:42:20] 2025-11-20 23:42:20,127 [wrapper] pilotpid: 496293
[2025-11-20 23:42:20] 2025-11-20 23:42:20,130 [wrapper] Pilot exit status: 0
[2025-11-20 23:42:20] 2025-11-20 23:42:20,142 [wrapper] pandaids: 6891576679
[2025-11-20 23:42:20] 2025-11-20 23:42:20,214 [wrapper] cleanup supervisor_pilot 2078061 496294
[2025-11-20 23:42:20] 2025-11-20 23:42:20,217 [wrapper] Test setup, not cleaning
[2025-11-20 23:42:20] 2025-11-20 23:42:20,221 [wrapper] apfmon messages muted
[2025-11-20 23:42:20] 2025-11-20 23:42:20,224 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:42:20] 2025-11-20 23:42:20,227 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:42:20]  *** Error codes and diagnostics ***
[2025-11-20 23:42:20]     "exeErrorCode": 0,
[2025-11-20 23:42:20]     "exeErrorDiag": "",
[2025-11-20 23:42:20]     "pilotErrorCode": 0,
[2025-11-20 23:42:20]     "pilotErrorDiag": "",
[2025-11-20 23:42:20]  *** Listing of results directory ***
[2025-11-20 23:42:20] total 1324384
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:24 pilot3.tar.gz
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:43 queuedata.json
[2025-11-20 23:42:20] -rwx------ 1 boinc boinc     36292 Nov 18 16:44 runpilot2-wrapper.sh
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc       100 Nov 20 07:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:42:20] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 07:25 run_atlas
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc       105 Nov 20 07:25 job.xml
[2025-11-20 23:42:20] -rw-r--r-- 2 boinc boinc 409525065 Nov 20 07:25 EVNT.47493065._000378.pool.root.1
[2025-11-20 23:42:20] -rw-r--r-- 2 boinc boinc    590097 Nov 20 07:25 input.tar.gz
[2025-11-20 23:42:20] drwxrwx--x 2 boinc boinc      4096 Nov 20 07:25 shared
[2025-11-20 23:42:20] -rw-r--r-- 2 boinc boinc     15120 Nov 20 07:25 start_atlas.sh
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc         0 Nov 20 07:25 boinc_setup_complete
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc      6662 Nov 20 07:25 init_data.xml
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc         0 Nov 20 07:25 boinc_lockfile
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc      2773 Nov 20 07:25 pandaJob.out
[2025-11-20 23:42:20] -rw------- 1 boinc boinc    989443 Nov 20 07:25 agis_schedconf.cvmfs.json
[2025-11-20 23:42:20] drwx------ 5 boinc boinc      4096 Nov 20 07:25 pilot3
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc       532 Nov 20 23:33 boinc_task_state.xml
[2025-11-20 23:42:20] -rw------- 1 boinc boinc 923156050 Nov 20 23:40 HITS.47493068._003774.pool.root.1
[2025-11-20 23:42:20] -rw------- 1 boinc boinc        95 Nov 20 23:40 pilot_heartbeat.json
[2025-11-20 23:42:20] -rw------- 1 boinc boinc      1052 Nov 20 23:41 memory_monitor_summary.json
[2025-11-20 23:42:20] -rw------- 1 boinc boinc   1526164 Nov 20 23:41 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:42:20] -rw------- 1 boinc boinc   1692469 Nov 20 23:41 log.47493068._003774.job.log.tgz.1
[2025-11-20 23:42:20] -rw------- 1 boinc boinc      8609 Nov 20 23:41 heartbeat.json
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc      8192 Nov 20 23:42 boinc_mmap_file
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc        29 Nov 20 23:42 wrapper_checkpoint.txt
[2025-11-20 23:42:20] -rw------- 1 boinc boinc      4964 Nov 20 23:42 pilotlog.txt
[2025-11-20 23:42:20] -rw------- 1 boinc boinc   8089733 Nov 20 23:42 log.47493068._003774.job.log.1
[2025-11-20 23:42:20] -rw------- 1 boinc boinc       353 Nov 20 23:42 output.list
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc       620 Nov 20 23:42 runtime_log
[2025-11-20 23:42:20] -rw------- 1 boinc boinc   9799680 Nov 20 23:42 result.tar.gz
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc      8793 Nov 20 23:42 runtime_log.err
[2025-11-20 23:42:20] -rw------- 1 boinc boinc       663 Nov 20 23:42 kc6MDmhzdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmOsFKDmJGDeem.diag
[2025-11-20 23:42:20] -rw-r--r-- 1 boinc boinc     21012 Nov 20 23:42 stderr.txt
[2025-11-20 23:42:20] HITS file was successfully produced:
[2025-11-20 23:42:20] -rw------- 1 boinc boinc 923156050 Nov 20 23:40 shared/HITS.pool.root.1
[2025-11-20 23:42:20]  *** Contents of shared directory: ***
[2025-11-20 23:42:20] total 1311624
[2025-11-20 23:42:20] -rw-r--r-- 2 boinc boinc 409525065 Nov 20 07:25 ATLAS.root_0
[2025-11-20 23:42:20] -rw-r--r-- 2 boinc boinc    590097 Nov 20 07:25 input.tar.gz
[2025-11-20 23:42:20] -rw-r--r-- 2 boinc boinc     15120 Nov 20 07:25 start_atlas.sh
[2025-11-20 23:42:20] -rw------- 1 boinc boinc 923156050 Nov 20 23:40 HITS.pool.root.1
[2025-11-20 23:42:20] -rw------- 1 boinc boinc   9799680 Nov 20 23:42 result.tar.gz
23:42:22 (470259): run_atlas exited; CPU time 229077.255960
23:42:22 (470259): called boinc_finish(0)

</stderr_txt>
]]>

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