Stderr output

<core_client_version>8.2.6</core_client_version>
<![CDATA[
<stderr_txt>
07:25:29 (471577): wrapper (7.7.26015): starting
07:25:29 (471577): wrapper: running run_atlas (--nthreads 4)
[2025-11-20 07:25:29] Arguments: --nthreads 4
[2025-11-20 07:25:29] Threads: 4
[2025-11-20 07:25:29] Checking for CVMFS
[2025-11-20 07:25:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 07:25:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 07:25:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 07:25:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 07:25:29] 2.13.3.0 32779 2954 51608 153074 0 81 2680065 4096000 90 130560 31 13674593 99.961 390024 898 http://s1ral-cvmfs.openhtc.io/cvmfs/atlas.cern.ch http://192.168.0.178:3128 1
[2025-11-20 07:25:29] CVMFS is ok
[2025-11-20 07:25:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 07:25:29] Checking for apptainer binary...
[2025-11-20 07:25:29] apptainer is not installed, using version from CVMFS
[2025-11-20 07:25:29] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 07:25:29] senture-c621e-l
[2025-11-20 07:25:29] apptainer works
[2025-11-20 07:25:29] Set ATHENA_PROC_NUMBER=4
[2025-11-20 07:25:29] Set ATHENA_CORE_NUMBER=4
[2025-11-20 07:25:29] Starting ATLAS job with PandaID=6891583667
[2025-11-20 07:25:29] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/3 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 23:58:24]  *** The last 200 lines of the pilot log: ***
[2025-11-20 23:58:24] 2025-11-20 23:57:19,996 | INFO     | found 32 cores (32 cores per socket, 1 socket) HT, CPU MHz: 2600.0059999999967
[2025-11-20 23:58:24] 2025-11-20 23:57:20,008 | INFO     | using path: /var/lib/boinc-client/slots/3/PanDA_Pilot-6891583667/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,009 | INFO     | extracted standard info from prmon json
[2025-11-20 23:58:24] 2025-11-20 23:57:20,010 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 23:58:24] 2025-11-20 23:57:20,010 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 23:58:24] 2025-11-20 23:57:20,029 | INFO     | fitting pss+swap vs Time
[2025-11-20 23:58:24] 2025-11-20 23:57:20,031 | INFO     | sum of square deviations: 287403390513.9964
[2025-11-20 23:58:24] 2025-11-20 23:57:20,066 | INFO     | sum of deviations: 825065002283.4481
[2025-11-20 23:58:24] 2025-11-20 23:57:20,067 | INFO     | mean x: 1763653269.0020514
[2025-11-20 23:58:24] 2025-11-20 23:57:20,067 | INFO     | mean y: 2245391.775384615
[2025-11-20 23:58:24] 2025-11-20 23:57:20,067 | INFO     | intersect: -5060772778.657522
[2025-11-20 23:58:24] 2025-11-20 23:57:20,068 | INFO     | chi2: 4.227758723801129
[2025-11-20 23:58:24] 2025-11-20 23:57:20,070 | INFO     | sum of square deviations: 283004434226.4954
[2025-11-20 23:58:24] 2025-11-20 23:57:20,105 | INFO     | sum of deviations: 1034147010182.7908
[2025-11-20 23:58:24] 2025-11-20 23:57:20,105 | INFO     | mean x: 1763653116.5020618
[2025-11-20 23:58:24] 2025-11-20 23:57:20,105 | INFO     | mean y: 2252635.8546391753
[2025-11-20 23:58:24] 2025-11-20 23:57:20,106 | INFO     | intersect: -6442440015.040276
[2025-11-20 23:58:24] 2025-11-20 23:57:20,106 | INFO     | chi2: 1.857317398546925
[2025-11-20 23:58:24] 2025-11-20 23:57:20,107 | INFO     | current chi2=1.857317398546925 (change=56.06851005733288 %)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,108 | INFO     | sum of square deviations: 278650595063.99603
[2025-11-20 23:58:24] 2025-11-20 23:57:20,141 | INFO     | sum of deviations: 1024158121527.9763
[2025-11-20 23:58:24] 2025-11-20 23:57:20,141 | INFO     | mean x: 1763652964.0020726
[2025-11-20 23:58:24] 2025-11-20 23:57:20,142 | INFO     | mean y: 2252286.012435233
[2025-11-20 23:58:24] 2025-11-20 23:57:20,142 | INFO     | intersect: -6479914049.303581
[2025-11-20 23:58:24] 2025-11-20 23:57:20,143 | INFO     | chi2: 1.8562520522973516
[2025-11-20 23:58:24] 2025-11-20 23:57:20,143 | INFO     | current chi2=1.8562520522973516 (change=0.05735940719700382 %)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,143 | INFO     | right removable region: 964
[2025-11-20 23:58:24] 2025-11-20 23:57:20,145 | INFO     | sum of square deviations: 283004433006.4954
[2025-11-20 23:58:24] 2025-11-20 23:57:20,178 | INFO     | sum of deviations: 661627013690.0615
[2025-11-20 23:58:24] 2025-11-20 23:57:20,179 | INFO     | mean x: 1763653421.5020618
[2025-11-20 23:58:24] 2025-11-20 23:57:20,179 | INFO     | mean y: 2251046.969072165
[2025-11-20 23:58:24] 2025-11-20 23:57:20,179 | INFO     | intersect: -4120937887.056872
[2025-11-20 23:58:24] 2025-11-20 23:57:20,181 | INFO     | chi2: 2.540951567945044
[2025-11-20 23:58:24] 2025-11-20 23:57:20,181 | INFO     | current chi2=2.540951567945044 (change=39.89837798358313 %)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,182 | INFO     | sum of square deviations: 278650592623.99603
[2025-11-20 23:58:24] 2025-11-20 23:57:20,215 | INFO     | time since job start (59502s) is within the limit (172800.0s)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,218 | INFO     | sum of deviations: 625920580120.4877
[2025-11-20 23:58:24] 2025-11-20 23:57:20,218 | INFO     | mean x: 1763653574.0020726
[2025-11-20 23:58:24] 2025-11-20 23:57:20,218 | INFO     | mean y: 2252297.255958549
[2025-11-20 23:58:24] 2025-11-20 23:57:20,219 | INFO     | intersect: -3959365217.2652917
[2025-11-20 23:58:24] 2025-11-20 23:57:20,220 | INFO     | chi2: 2.5122330271026176
[2025-11-20 23:58:24] 2025-11-20 23:57:20,220 | INFO     | current chi2=2.5122330271026176 (change=1.1302277935841218 %)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,220 | INFO     | left removable region: 20
[2025-11-20 23:58:24] 2025-11-20 23:57:20,221 | INFO     | sum of square deviations: 260851896235.99606
[2025-11-20 23:58:24] 2025-11-20 23:57:20,255 | INFO     | sum of deviations: 766797165409.0591
[2025-11-20 23:58:24] 2025-11-20 23:57:20,256 | INFO     | mean x: 1763653543.5021186
[2025-11-20 23:58:24] 2025-11-20 23:57:20,256 | INFO     | mean y: 2261329.970338983
[2025-11-20 23:58:24] 2025-11-20 23:57:20,256 | INFO     | intersect: -5182153878.181208
[2025-11-20 23:58:24] 2025-11-20 23:57:20,257 | INFO     | chi2: 0.10563610600498277
[2025-11-20 23:58:24] 2025-11-20 23:57:20,258 | INFO     | current memory leak: 2.94 B/s (using 944 data points, chi2=0.11)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,260 | INFO     | could have reported an average CPU frequency of 2600 MHz (36 samples)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,260 | INFO     | ..............................
[2025-11-20 23:58:24] 2025-11-20 23:57:20,260 | INFO     | . Timing measurements:
[2025-11-20 23:58:24] 2025-11-20 23:57:20,260 | INFO     | . get job = 0 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,260 | INFO     | . initial setup = 1 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,261 | INFO     | . payload setup = 5 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,261 | INFO     | . stage-in = 0 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,261 | INFO     | . payload execution = 59469 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,261 | INFO     | . stage-out = 2 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,261 | INFO     | . log creation = 0 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,261 | INFO     | ..............................
[2025-11-20 23:58:24] 2025-11-20 23:57:20,406 | INFO     | 
[2025-11-20 23:58:24] 2025-11-20 23:57:20,406 | INFO     | job summary report
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | --------------------------------------------------
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | PanDA job id: 6891583667
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | task id: 47493068
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | errors: (none)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | pilot state: finished 
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | transexitcode: 0
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | exeerrorcode: 0
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | exeerrordiag: 
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | exitcode: 0
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | exitmsg: OK
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | cpuconsumptiontime: 231585 s
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | nevents: 1000
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | neventsw: 0
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | pid: 622496
[2025-11-20 23:58:24] 2025-11-20 23:57:20,407 | INFO     | pgrp: 622496
[2025-11-20 23:58:24] 2025-11-20 23:57:20,408 | INFO     | corecount: 4
[2025-11-20 23:58:24] 2025-11-20 23:57:20,408 | INFO     | event service: False
[2025-11-20 23:58:24] 2025-11-20 23:57:20,408 | INFO     | sizes: {0: 2297207, 4: 2297469, 11: 2297497, 59478: 2349139, 59480: 2359743, 59482: 2359799, 59488: 2360173}
[2025-11-20 23:58:24] 2025-11-20 23:57:20,408 | INFO     | --------------------------------------------------
[2025-11-20 23:58:24] 2025-11-20 23:57:20,408 | INFO     | 
[2025-11-20 23:58:24] 2025-11-20 23:57:20,408 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/3
[2025-11-20 23:58:24] 2025-11-20 23:57:20,433 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,434 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | job 6891583667 has completed (purged errors)
[2025-11-20 23:58:24] 2025-11-20 23:57:20,435 | INFO     | overall cleanup function is called
[2025-11-20 23:58:24] 2025-11-20 23:57:21,448 | INFO     | --- collectZombieJob: --- 10, [622496]
[2025-11-20 23:58:24] 2025-11-20 23:57:21,449 | INFO     | zombie collector waiting for pid 622496
[2025-11-20 23:58:24] 2025-11-20 23:57:21,449 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 23:58:24] 2025-11-20 23:57:21,449 | INFO     | collected zombie processes
[2025-11-20 23:58:24] 2025-11-20 23:57:21,449 | INFO     | will attempt to kill all subprocesses of pid=622496
[2025-11-20 23:58:24] 2025-11-20 23:57:21,749 | INFO     | process IDs to be killed: [622496] (in reverse order)
[2025-11-20 23:58:24] 2025-11-20 23:57:21,887 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 23:58:24] 2025-11-20 23:57:21,887 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 23:58:24] 2025-11-20 23:57:21,895 | INFO     | did not find any defunct processes belonging to 622496
[2025-11-20 23:58:24] 2025-11-20 23:57:21,903 | INFO     | did not find any defunct processes belonging to 622496
[2025-11-20 23:58:24] 2025-11-20 23:57:21,904 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 23:58:24] 2025-11-20 23:57:21,905 | INFO     | ready for new job
[2025-11-20 23:58:24] 2025-11-20 23:57:21,905 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 23:58:24] 2025-11-20 23:57:21,910 | INFO     | ***************************************
[2025-11-20 23:58:24] 2025-11-20 23:57:21,910 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 23:58:24] 2025-11-20 23:57:21,910 | INFO     | ***************************************
[2025-11-20 23:58:24] 2025-11-20 23:57:21,910 | INFO     | 
[2025-11-20 23:58:24] 2025-11-20 23:57:21,913 | INFO     | pilot is running in a VM
[2025-11-20 23:58:24] 2025-11-20 23:57:21,913 | INFO     | architecture information:
[2025-11-20 23:58:24] 2025-11-20 23:57:21,914 | INFO     | executing command: cat /etc/os-release
[2025-11-20 23:58:24] 2025-11-20 23:57:21,930 | INFO     | cat /etc/os-release:
[2025-11-20 23:58:24] NAME="CentOS Linux"
[2025-11-20 23:58:24] VERSION="7 (Core)"
[2025-11-20 23:58:24] ID="centos"
[2025-11-20 23:58:24] ID_LIKE="rhel fedora"
[2025-11-20 23:58:24] VERSION_ID="7"
[2025-11-20 23:58:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 23:58:24] ANSI_COLOR="0;31"
[2025-11-20 23:58:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 23:58:24] HOME_URL="https://www.centos.org/"
[2025-11-20 23:58:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 23:58:24] 
[2025-11-20 23:58:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 23:58:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 23:58:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 23:58:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 23:58:24] 
[2025-11-20 23:58:24] 2025-11-20 23:57:21,930 | INFO     | ***************************************
[2025-11-20 23:58:24] 2025-11-20 23:57:22,433 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/3
[2025-11-20 23:58:24] 2025-11-20 23:57:22,450 | INFO     | sufficient remaining disk space (84067483648 B)
[2025-11-20 23:58:24] 2025-11-20 23:57:22,450 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 23:58:24] 2025-11-20 23:57:22,451 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 23:58:24] 2025-11-20 23:57:22,451 | INFO     | update_server=False
[2025-11-20 23:58:24] 2025-11-20 23:57:22,451 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 23:58:24] 2025-11-20 23:57:22,657 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:58:24] 2025-11-20 23:57:22,658 | INFO     | aborting loop
[2025-11-20 23:58:24] 2025-11-20 23:57:22,684 | INFO     | all job control threads have been joined
[2025-11-20 23:58:24] 2025-11-20 23:57:23,227 | INFO     | all data control threads have been joined
[2025-11-20 23:58:24] 2025-11-20 23:57:23,456 | INFO     | [job] retrieve thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:23,476 | INFO     | [data] copytool_in thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:23,515 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 23:58:24] 2025-11-20 23:57:23,663 | INFO     | [job] job monitor thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:23,664 | INFO     | all payload control threads have been joined
[2025-11-20 23:58:24] 2025-11-20 23:57:23,686 | INFO     | [job] control thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:23,865 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:23,988 | INFO     | [payload] failed_post thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:24,017 | INFO     | [job] validate thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:24,233 | INFO     | [data] control thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:24,247 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:24,247 | INFO     | [payload] validate_post thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:24,668 | INFO     | [payload] control thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:24,793 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:24,860 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 23:58:24] 2025-11-20 23:57:25,416 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 23:58:24] 2025-11-20 23:57:25,520 | INFO     | [data] copytool_out thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:26,421 | INFO     | [job] queue monitor thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:28,865 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:32,711 | INFO     | job.realtimelogging is not enabled
[2025-11-20 23:58:24] 2025-11-20 23:57:33,716 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 23:58:24] 2025-11-20 23:57:52,290 | INFO     | 59505s have passed since pilot start - server update state is 'UPDATING_FINAL'
[2025-11-20 23:58:24] 2025-11-20 23:57:53,632 | INFO     | PID=501391 has CPU usage=8.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 23:58:24] 2025-11-20 23:57:53,632 | INFO     | .. there are 16 such processes running
[2025-11-20 23:58:24] 2025-11-20 23:57:53,633 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 23:58:24] 2025-11-20 23:57:53,633 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 23:58:24] 2025-11-20 23:57:53,633 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 23:58:24] 2025-11-20 23:58:16,786 | INFO     | [monitor] cgroup control has ended
[2025-11-20 23:58:24] 2025-11-20 23:58:18,816 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 130039644661568)>', '<ExcThread(monitor, started 130038951290624)>']
[2025-11-20 23:58:24] 2025-11-20 23:58:19,750 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 23:58:24] 2025-11-20 23:58:19,751 | INFO     | [monitor] control thread has ended
[2025-11-20 23:58:24] 2025-11-20 23:58:23,841 | INFO     | all workflow threads have been joined
[2025-11-20 23:58:24] 2025-11-20 23:58:23,841 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 23:58:24] 2025-11-20 23:58:23,842 | INFO     | traces error code: 0
[2025-11-20 23:58:24] 2025-11-20 23:58:23,842 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 23:58:24] 2025-11-20 23:58:24,000 [wrapper] ==== pilot stdout END ====
[2025-11-20 23:58:24] 2025-11-20 23:58:24,004 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 23:58:24] 2025-11-20 23:58:24,007 [wrapper] pilotpid: 501391
[2025-11-20 23:58:24] 2025-11-20 23:58:24,010 [wrapper] Pilot exit status: 0
[2025-11-20 23:58:24] 2025-11-20 23:58:24,021 [wrapper] pandaids: 6891583667
[2025-11-20 23:58:24] 2025-11-20 23:58:24,085 [wrapper] cleanup supervisor_pilot 2159995 501392
[2025-11-20 23:58:24] 2025-11-20 23:58:24,091 [wrapper] Test setup, not cleaning
[2025-11-20 23:58:24] 2025-11-20 23:58:24,094 [wrapper] apfmon messages muted
[2025-11-20 23:58:24] 2025-11-20 23:58:24,097 [wrapper] ==== wrapper stdout END ====
[2025-11-20 23:58:24] 2025-11-20 23:58:24,100 [wrapper] ==== wrapper stderr END ====
[2025-11-20 23:58:24]  *** Error codes and diagnostics ***
[2025-11-20 23:58:24]     "exeErrorCode": 0,
[2025-11-20 23:58:24]     "exeErrorDiag": "",
[2025-11-20 23:58:24]     "pilotErrorCode": 0,
[2025-11-20 23:58:24]     "pilotErrorDiag": "",
[2025-11-20 23:58:24]  *** Listing of results directory ***
[2025-11-20 23:58:24] total 1320444
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:45 pilot3.tar.gz
[2025-11-20 23:58:24] -rwx------ 1 boinc boinc     36292 Nov 18 17:09 runpilot2-wrapper.sh
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc      5112 Nov 18 17:09 queuedata.json
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc       100 Nov 20 07:25 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 23:58:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 07:25 run_atlas
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc       105 Nov 20 07:25 job.xml
[2025-11-20 23:58:24] -rw-r--r-- 2 boinc boinc 409886177 Nov 20 07:25 EVNT.47493065._000435.pool.root.1
[2025-11-20 23:58:24] drwxrwx--x 2 boinc boinc      4096 Nov 20 07:25 shared
[2025-11-20 23:58:24] -rw-r--r-- 2 boinc boinc    590092 Nov 20 07:25 input.tar.gz
[2025-11-20 23:58:24] -rw-r--r-- 2 boinc boinc     15120 Nov 20 07:25 start_atlas.sh
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc         0 Nov 20 07:25 boinc_setup_complete
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc      6662 Nov 20 07:25 init_data.xml
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc         0 Nov 20 07:25 boinc_lockfile
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc      2773 Nov 20 07:25 pandaJob.out
[2025-11-20 23:58:24] -rw------- 1 boinc boinc    989443 Nov 20 07:25 agis_schedconf.cvmfs.json
[2025-11-20 23:58:24] drwx------ 5 boinc boinc      4096 Nov 20 07:25 pilot3
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc       533 Nov 20 23:51 boinc_task_state.xml
[2025-11-20 23:58:24] -rw------- 1 boinc boinc 918519837 Nov 20 23:56 HITS.47493068._004345.pool.root.1
[2025-11-20 23:58:24] -rw------- 1 boinc boinc      1054 Nov 20 23:57 memory_monitor_summary.json
[2025-11-20 23:58:24] -rw------- 1 boinc boinc   1526164 Nov 20 23:57 agis_ddmendpoints.agis.ALL.json
[2025-11-20 23:58:24] -rw------- 1 boinc boinc   1699280 Nov 20 23:57 log.47493068._004345.job.log.tgz.1
[2025-11-20 23:58:24] -rw------- 1 boinc boinc      8613 Nov 20 23:57 heartbeat.json
[2025-11-20 23:58:24] -rw------- 1 boinc boinc        95 Nov 20 23:57 pilot_heartbeat.json
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc        29 Nov 20 23:57 wrapper_checkpoint.txt
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc      8192 Nov 20 23:57 boinc_mmap_file
[2025-11-20 23:58:24] -rw------- 1 boinc boinc      5080 Nov 20 23:58 pilotlog.txt
[2025-11-20 23:58:24] -rw------- 1 boinc boinc   8204075 Nov 20 23:58 log.47493068._004345.job.log.1
[2025-11-20 23:58:24] -rw------- 1 boinc boinc       353 Nov 20 23:58 output.list
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc       620 Nov 20 23:58 runtime_log
[2025-11-20 23:58:24] -rw------- 1 boinc boinc   9922560 Nov 20 23:58 result.tar.gz
[2025-11-20 23:58:24] -rw------- 1 boinc boinc       662 Nov 20 23:58 x38LDm6Nef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmayFKDmkH2wGn.diag
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc      8793 Nov 20 23:58 runtime_log.err
[2025-11-20 23:58:24] -rw-r--r-- 1 boinc boinc     21005 Nov 20 23:58 stderr.txt
[2025-11-20 23:58:24] HITS file was successfully produced:
[2025-11-20 23:58:24] -rw------- 1 boinc boinc 918519837 Nov 20 23:56 shared/HITS.pool.root.1
[2025-11-20 23:58:24]  *** Contents of shared directory: ***
[2025-11-20 23:58:24] total 1307572
[2025-11-20 23:58:24] -rw-r--r-- 2 boinc boinc 409886177 Nov 20 07:25 ATLAS.root_0
[2025-11-20 23:58:24] -rw-r--r-- 2 boinc boinc    590092 Nov 20 07:25 input.tar.gz
[2025-11-20 23:58:24] -rw-r--r-- 2 boinc boinc     15120 Nov 20 07:25 start_atlas.sh
[2025-11-20 23:58:24] -rw------- 1 boinc boinc 918519837 Nov 20 23:56 HITS.pool.root.1
[2025-11-20 23:58:24] -rw------- 1 boinc boinc   9922560 Nov 20 23:58 result.tar.gz
23:58:26 (471577): run_atlas exited; CPU time 233277.184038
23:58:26 (471577): called boinc_finish(0)

</stderr_txt>
]]>

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