Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
12:19:35 (631480): wrapper (7.7.26015): starting
12:19:35 (631480): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 12:19:35] Arguments: --nthreads 3
[2025-11-20 12:19:35] Threads: 3
[2025-11-20 12:19:35] Checking for CVMFS
[2025-11-20 12:19:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 12:19:35] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 12:19:35] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 12:19:35] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 12:19:35] 2.9.2.0 317284 2362 69072 153078 2 81 34016073 36864000 0 130560 0 881281 99.758 266217 7586 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 12:19:35] CVMFS is ok
[2025-11-20 12:19:35] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 12:19:35] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 12:19:35] Further information can be found at the LHC@home message board.
[2025-11-20 12:19:35] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 12:19:35] Checking for apptainer binary...
[2025-11-20 12:19:35] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 12:19:35] Running /usr/bin/apptainer --version
[2025-11-20 12:19:35] apptainer version 1.4.1-1.1
[2025-11-20 12:19:35] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 12:19:35] thA337a
[2025-11-20 12:19:35] apptainer works
[2025-11-20 12:19:35] Set ATHENA_PROC_NUMBER=3
[2025-11-20 12:19:35] Set ATHENA_CORE_NUMBER=3
[2025-11-20 12:19:35] Starting ATLAS job with PandaID=6891584446
[2025-11-20 12:19:35] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 19:56:28]  *** The last 200 lines of the pilot log: ***
[2025-11-20 19:56:28] 2025-11-20 18:55:57,825 | INFO     | architecture information:
[2025-11-20 19:56:28] 2025-11-20 18:55:57,825 | INFO     | executing command: cat /etc/os-release
[2025-11-20 19:56:28] 2025-11-20 18:55:57,834 | INFO     | cat /etc/os-release:
[2025-11-20 19:56:28] NAME="CentOS Linux"
[2025-11-20 19:56:28] VERSION="7 (Core)"
[2025-11-20 19:56:28] ID="centos"
[2025-11-20 19:56:28] ID_LIKE="rhel fedora"
[2025-11-20 19:56:28] VERSION_ID="7"
[2025-11-20 19:56:28] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 19:56:28] ANSI_COLOR="0;31"
[2025-11-20 19:56:28] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 19:56:28] HOME_URL="https://www.centos.org/"
[2025-11-20 19:56:28] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 19:56:28] 
[2025-11-20 19:56:28] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 19:56:28] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 19:56:28] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 19:56:28] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 19:56:28] 
[2025-11-20 19:56:28] 2025-11-20 18:55:57,834 | INFO     | ***************************************
[2025-11-20 19:56:28] 2025-11-20 18:55:58,337 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 19:56:28] 2025-11-20 18:55:58,349 | INFO     | sufficient remaining disk space (367893938176 B)
[2025-11-20 19:56:28] 2025-11-20 18:55:58,349 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 19:56:28] 2025-11-20 18:55:58,349 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 19:56:28] 2025-11-20 18:55:58,349 | INFO     | update_server=False
[2025-11-20 19:56:28] 2025-11-20 18:55:58,349 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 19:56:28] 2025-11-20 18:55:58,349 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:56:28] 2025-11-20 18:55:58,349 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 19:56:28] 2025-11-20 18:55:58,413 | INFO     | all data control threads have been joined
[2025-11-20 19:56:28] 2025-11-20 18:55:58,587 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 19:56:28] 2025-11-20 18:55:58,999 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 19:56:28] 2025-11-20 18:55:59,000 | INFO     | aborting loop
[2025-11-20 19:56:28] 2025-11-20 18:55:59,172 | INFO     | all payload control threads have been joined
[2025-11-20 19:56:28] 2025-11-20 18:55:59,355 | INFO     | [job] queue monitor thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:55:59,355 | INFO     | [job] retrieve thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:55:59,418 | INFO     | [data] control thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:55:59,510 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:55:59,810 | INFO     | [payload] validate_post thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:55:59,842 | INFO     | all job control threads have been joined
[2025-11-20 19:56:28] 2025-11-20 18:56:00,004 | INFO     | [job] job monitor thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,178 | INFO     | [payload] control thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,346 | INFO     | [data] copytool_in thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,355 | INFO     | [data] copytool_out thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,584 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,597 | INFO     | [job] validate thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,619 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,845 | INFO     | [job] control thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,853 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:00,910 | INFO     | [payload] failed_post thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:02,594 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 19:56:28] 2025-11-20 18:56:13,318 | INFO     | [monitor] cgroup control has ended
[2025-11-20 19:56:28] 2025-11-20 18:56:14,437 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140708174784320)>', '<ExcThread(monitor, started 140707683624704)>']
[2025-11-20 19:56:28] 2025-11-20 18:56:19,463 | INFO     | all workflow threads have been joined
[2025-11-20 19:56:28] 2025-11-20 18:56:19,463 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 19:56:28] 2025-11-20 18:56:19,463 | INFO     | traces error code: 0
[2025-11-20 19:56:28] 2025-11-20 18:56:19,463 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 19:56:28] 2025-11-20 18:56:28,335 | INFO     | PID=635203 has CPU usage=2.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 19:56:28] 2025-11-20 18:56:28,335 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 19:56:28] 2025-11-20 18:56:28,335 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 19:56:28] 2025-11-20 18:56:28,335 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 19:56:28] 2025-11-20 18:56:28,335 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 19:56:28] 2025-11-20 18:56:28,335 | INFO     | [monitor] control thread has ended
[2025-11-20 19:56:28] 2025-11-20 18:56:28,380 [wrapper] ==== pilot stdout END ====
[2025-11-20 19:56:28] 2025-11-20 18:56:28,383 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 19:56:28] 2025-11-20 18:56:28,385 [wrapper] pilotpid: 635203
[2025-11-20 19:56:28] 2025-11-20 18:56:28,387 [wrapper] Pilot exit status: 0
[2025-11-20 19:56:28] 2025-11-20 18:56:28,394 [wrapper] pandaids: 6891584446
[2025-11-20 19:56:28] 2025-11-20 18:56:28,410 [wrapper] cleanup supervisor_pilot  689915 635204
[2025-11-20 19:56:28] 2025-11-20 18:56:28,412 [wrapper] Test setup, not cleaning
[2025-11-20 19:56:28] 2025-11-20 18:56:28,414 [wrapper] apfmon messages muted
[2025-11-20 19:56:28] 2025-11-20 18:56:28,417 [wrapper] ==== wrapper stdout END ====
[2025-11-20 19:56:28] 2025-11-20 18:56:28,419 [wrapper] ==== wrapper stderr END ====
[2025-11-20 19:56:28]  *** Error codes and diagnostics ***
[2025-11-20 19:56:28]     "exeErrorCode": 0,
[2025-11-20 19:56:28]     "exeErrorDiag": "",
[2025-11-20 19:56:28]     "pilotErrorCode": 0,
[2025-11-20 19:56:28]     "pilotErrorDiag": "",
[2025-11-20 19:56:28]  *** Listing of results directory ***
[2025-11-20 19:56:28] total 1295624
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-20 19:56:28] -rwx------ 1 boinc boinc     36292 Nov 18 18:18 runpilot2-wrapper.sh
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:18 queuedata.json
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc       100 Nov 20 12:19 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 19:56:28] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 12:19 run_atlas
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc       105 Nov 20 12:19 job.xml
[2025-11-20 19:56:28] -rw-r--r-- 2 boinc boinc 408826018 Nov 20 12:19 EVNT.47493065._000461.pool.root.1
[2025-11-20 19:56:28] drwxrwx--x 2 boinc boinc      4096 Nov 20 12:19 shared
[2025-11-20 19:56:28] -rw-r--r-- 2 boinc boinc    590100 Nov 20 12:19 input.tar.gz
[2025-11-20 19:56:28] -rw-r--r-- 2 boinc boinc     15120 Nov 20 12:19 start_atlas.sh
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc         0 Nov 20 12:19 boinc_setup_complete
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc      6446 Nov 20 12:19 init_data.xml
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc         0 Nov 20 12:19 boinc_lockfile
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc      2773 Nov 20 12:19 pandaJob.out
[2025-11-20 19:56:28] -rw------- 1 boinc boinc    989443 Nov 20 12:19 agis_schedconf.cvmfs.json
[2025-11-20 19:56:28] drwx------ 5 boinc boinc      4096 Nov 20 12:19 pilot3
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc       531 Nov 20 19:52 boinc_task_state.xml
[2025-11-20 19:56:28] -rw------- 1 boinc boinc 903985466 Nov 20 19:55 HITS.47493068._004604.pool.root.1
[2025-11-20 19:56:28] -rw------- 1 boinc boinc      1022 Nov 20 19:55 memory_monitor_summary.json
[2025-11-20 19:56:28] -rw------- 1 boinc boinc        95 Nov 20 19:55 pilot_heartbeat.json
[2025-11-20 19:56:28] -rw------- 1 boinc boinc   1526164 Nov 20 19:55 agis_ddmendpoints.agis.ALL.json
[2025-11-20 19:56:28] -rw------- 1 boinc boinc   1147828 Nov 20 19:55 log.47493068._004604.job.log.tgz.1
[2025-11-20 19:56:28] -rw------- 1 boinc boinc      8562 Nov 20 19:55 heartbeat.json
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc      8192 Nov 20 19:56 boinc_mmap_file
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc        28 Nov 20 19:56 wrapper_checkpoint.txt
[2025-11-20 19:56:28] -rw------- 1 boinc boinc       746 Nov 20 19:56 pilotlog.txt
[2025-11-20 19:56:28] -rw------- 1 boinc boinc   3852067 Nov 20 19:56 log.47493068._004604.job.log.1
[2025-11-20 19:56:28] -rw------- 1 boinc boinc       353 Nov 20 19:56 output.list
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc       620 Nov 20 19:56 runtime_log
[2025-11-20 19:56:28] -rw------- 1 boinc boinc   5017600 Nov 20 19:56 result.tar.gz
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc      8783 Nov 20 19:56 runtime_log.err
[2025-11-20 19:56:28] -rw------- 1 boinc boinc       666 Nov 20 19:56 qDXNDmYWef8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmszFKDmAsKZUm.diag
[2025-11-20 19:56:28] -rw-r--r-- 1 boinc boinc      8965 Nov 20 19:56 stderr.txt
[2025-11-20 19:56:28] HITS file was successfully produced:
[2025-11-20 19:56:28] -rw------- 1 boinc boinc 903985466 Nov 20 19:55 shared/HITS.pool.root.1
[2025-11-20 19:56:28]  *** Contents of shared directory: ***
[2025-11-20 19:56:28] total 1287552
[2025-11-20 19:56:28] -rw-r--r-- 2 boinc boinc 408826018 Nov 20 12:19 ATLAS.root_0
[2025-11-20 19:56:28] -rw-r--r-- 2 boinc boinc    590100 Nov 20 12:19 input.tar.gz
[2025-11-20 19:56:28] -rw-r--r-- 2 boinc boinc     15120 Nov 20 12:19 start_atlas.sh
[2025-11-20 19:56:28] -rw------- 1 boinc boinc 903985466 Nov 20 19:55 HITS.pool.root.1
[2025-11-20 19:56:28] -rw------- 1 boinc boinc   5017600 Nov 20 19:56 result.tar.gz
19:56:49 (631480): run_atlas exited; CPU time 80818.557750
19:56:49 (631480): called boinc_finish(0)

</stderr_txt>
]]>

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