Stderr output

<core_client_version>7.7.0</core_client_version>
<![CDATA[
<stderr_txt>
22:49:05 (31219): wrapper (7.7.26015): starting
22:49:05 (31219): wrapper: running run_atlas (--nthreads 8)
[2025-11-18 22:49:05] Arguments: --nthreads 8
[2025-11-18 22:49:05] Threads: 8
[2025-11-18 22:49:05] Checking for CVMFS
[2025-11-18 22:49:05] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-18 22:49:05] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-18 22:49:05] Running cvmfs_config stat atlas.cern.ch
[2025-11-18 22:49:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-18 22:49:05] 2.11.2.0 2795 36818 80928 153028 3 82 10941577 20275200 1 130560 0 3536590 99.342 2677223 30693 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-18 22:49:05] CVMFS is ok
[2025-11-18 22:49:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-18 22:49:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-18 22:49:05] Further information can be found at the LHC@home message board.
[2025-11-18 22:49:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-18 22:49:05] Checking for apptainer binary...
[2025-11-18 22:49:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-18 22:49:05] Running /usr/bin/apptainer --version
[2025-11-18 22:49:05] apptainer version 1.3.2-1.el7
[2025-11-18 22:49:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-18 22:49:07] c-204-18.aglt2.org
[2025-11-18 22:49:07] apptainer works
[2025-11-18 22:49:07] Set ATHENA_PROC_NUMBER=8
[2025-11-18 22:49:07] Set ATHENA_CORE_NUMBER=8
[2025-11-18 22:49:07] Starting ATLAS job with PandaID=6891591091
[2025-11-18 22:49:07] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
08:11:42 (23854): wrapper (7.7.26015): starting
08:11:42 (23854): wrapper: running run_atlas (--nthreads 8)
[2025-11-19 08:11:42] Arguments: --nthreads 8
[2025-11-19 08:11:42] Threads: 8
[2025-11-19 08:11:42] This job has been restarted, cleaning up previous attempt
[2025-11-19 08:11:42] Checking for CVMFS
[2025-11-19 08:11:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 08:11:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 08:11:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 08:11:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 08:11:42] 2.11.2.0 2795 37380 84792 153045 2 56 11611939 20275201 1 130560 0 3729616 99.374 2698443 30716 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.237.109:6081 1
[2025-11-19 08:11:42] CVMFS is ok
[2025-11-19 08:11:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 08:11:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 08:11:42] Further information can be found at the LHC@home message board.
[2025-11-19 08:11:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 08:11:42] Checking for apptainer binary...
[2025-11-19 08:11:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 08:11:42] Running /usr/bin/apptainer --version
[2025-11-19 08:11:42] apptainer version 1.3.2-1.el7
[2025-11-19 08:11:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 08:11:44] c-204-18.aglt2.org
[2025-11-19 08:11:44] apptainer works
[2025-11-19 08:11:44] Set ATHENA_PROC_NUMBER=8
[2025-11-19 08:11:44] Set ATHENA_CORE_NUMBER=8
[2025-11-19 08:11:44] Starting ATLAS job with PandaID=6891591091
[2025-11-19 08:11:44] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 20:28:22]  *** The last 200 lines of the pilot log: ***
[2025-11-19 20:28:22] 2025-11-20 01:27:40,009 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 20:28:22] 2025-11-20 01:27:41,775 | INFO     | time since job start (44138s) is within the limit (172800.0s)
[2025-11-19 20:28:22] 2025-11-20 01:27:42,513 | INFO     | monitor loop #3233: job 0:6891591091 is in state 'finished'
[2025-11-19 20:28:22] 2025-11-20 01:27:42,514 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,165 | INFO     | CPU arch script returned: x86-64-v2
[2025-11-19 20:28:22] 2025-11-20 01:27:43,171 | INFO     | found 8 cores (4 cores per socket, 2 sockets) , CPU MHz: 1695.875
[2025-11-19 20:28:22] 2025-11-20 01:27:43,174 | INFO     | using path: /tmp/boinchome/slots/0/PanDA_Pilot-6891591091/memory_monitor_summary.json (trf name=prmon)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,175 | INFO     | extracted standard info from prmon json
[2025-11-19 20:28:22] 2025-11-20 01:27:43,175 | INFO     | extracted standard memory fields from prmon json
[2025-11-19 20:28:22] 2025-11-20 01:27:43,175 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-19 20:28:22] 2025-11-20 01:27:43,188 | INFO     | fitting pss+swap vs Time
[2025-11-19 20:28:22] 2025-11-20 01:27:43,189 | INFO     | sum of square deviations: 117190785414.66656
[2025-11-19 20:28:22] 2025-11-20 01:27:43,201 | INFO     | sum of deviations: 763851589333.6664
[2025-11-19 20:28:22] 2025-11-20 01:27:43,201 | INFO     | mean x: 1763579977.6666667
[2025-11-19 20:28:22] 2025-11-20 01:27:43,201 | INFO     | mean y: 3225043.8948824345
[2025-11-19 20:28:22] 2025-11-20 01:27:43,202 | INFO     | intersect: -11491820100.577051
[2025-11-19 20:28:22] 2025-11-20 01:27:43,202 | INFO     | chi2: 5.752902936000547
[2025-11-19 20:28:22] 2025-11-20 01:27:43,203 | INFO     | sum of square deviations: 114776366219.92888
[2025-11-19 20:28:22] 2025-11-20 01:27:43,214 | INFO     | sum of deviations: 1019032969791.9902
[2025-11-19 20:28:22] 2025-11-20 01:27:43,215 | INFO     | mean x: 1763579825.1713092
[2025-11-19 20:28:22] 2025-11-20 01:27:43,215 | INFO     | mean y: 3241155.552924791
[2025-11-19 20:28:22] 2025-11-20 01:27:43,215 | INFO     | intersect: -15654564069.487522
[2025-11-19 20:28:22] 2025-11-20 01:27:43,216 | INFO     | chi2: 2.9442824617264023
[2025-11-19 20:28:22] 2025-11-20 01:27:43,216 | INFO     | current chi2=2.9442824617264023 (change=48.820925809443864 %)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,217 | INFO     | sum of square deviations: 112395299446.51036
[2025-11-19 20:28:22] 2025-11-20 01:27:43,228 | INFO     | sum of deviations: 1078101771767.0192
[2025-11-19 20:28:22] 2025-11-20 01:27:43,228 | INFO     | mean x: 1763579672.6746142
[2025-11-19 20:28:22] 2025-11-20 01:27:43,228 | INFO     | mean y: 3244925.525946704
[2025-11-19 20:28:22] 2025-11-20 01:27:43,229 | INFO     | intersect: -16913106373.20119
[2025-11-19 20:28:22] 2025-11-20 01:27:43,230 | INFO     | chi2: 2.619504892904456
[2025-11-19 20:28:22] 2025-11-20 01:27:43,230 | INFO     | current chi2=2.619504892904456 (change=11.030788419379785 %)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,230 | INFO     | right removable region: 712
[2025-11-19 20:28:22] 2025-11-20 01:27:43,231 | INFO     | sum of square deviations: 114776072199.92886
[2025-11-19 20:28:22] 2025-11-20 01:27:43,242 | INFO     | sum of deviations: 531863661722.8318
[2025-11-19 20:28:22] 2025-11-20 01:27:43,242 | INFO     | mean x: 1763580130.1713092
[2025-11-19 20:28:22] 2025-11-20 01:27:43,242 | INFO     | mean y: 3239671.050139276
[2025-11-19 20:28:22] 2025-11-20 01:27:43,243 | INFO     | intersect: -8169057636.185316
[2025-11-19 20:28:22] 2025-11-20 01:27:43,243 | INFO     | chi2: 3.2792947234824474
[2025-11-19 20:28:22] 2025-11-20 01:27:43,244 | INFO     | current chi2=3.2792947234824474 (change=42.99756557752332 %)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,244 | INFO     | sum of square deviations: 112394930275.54555
[2025-11-19 20:28:22] 2025-11-20 01:27:43,256 | INFO     | sum of deviations: 481271051630.2806
[2025-11-19 20:28:22] 2025-11-20 01:27:43,256 | INFO     | mean x: 1763580282.6704068
[2025-11-19 20:28:22] 2025-11-20 01:27:43,256 | INFO     | mean y: 3242909.8948106593
[2025-11-19 20:28:22] 2025-11-20 01:27:43,256 | INFO     | intersect: -7548344472.155322
[2025-11-19 20:28:22] 2025-11-20 01:27:43,257 | INFO     | chi2: 3.22013669989337
[2025-11-19 20:28:22] 2025-11-20 01:27:43,257 | INFO     | current chi2=3.22013669989337 (change=1.8039861792676728 %)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,257 | INFO     | left removable region: 20
[2025-11-19 20:28:22] 2025-11-20 01:27:43,258 | INFO     | sum of square deviations: 102753652311.78033
[2025-11-19 20:28:22] 2025-11-20 01:27:43,269 | INFO     | sum of deviations: 731624585675.9484
[2025-11-19 20:28:22] 2025-11-20 01:27:43,269 | INFO     | mean x: 1763580252.1791906
[2025-11-19 20:28:22] 2025-11-20 01:27:43,269 | INFO     | mean y: 3267277.6213872833
[2025-11-19 20:28:22] 2025-11-20 01:27:43,269 | INFO     | intersect: -12553743030.799145
[2025-11-19 20:28:22] 2025-11-20 01:27:43,270 | INFO     | chi2: 0.03985705686372921
[2025-11-19 20:28:22] 2025-11-20 01:27:43,270 | INFO     | current memory leak: 7.12 B/s (using 692 data points, chi2=0.04)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,271 | INFO     | could have reported an average CPU frequency of 2167 MHz (28 samples)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,272 | INFO     | ..............................
[2025-11-19 20:28:22] 2025-11-20 01:27:43,272 | INFO     | . Timing measurements:
[2025-11-19 20:28:22] 2025-11-20 01:27:43,272 | INFO     | . get job = 0 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,272 | INFO     | . initial setup = 2 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,272 | INFO     | . payload setup = 9 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,272 | INFO     | . stage-in = 0 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,273 | INFO     | . payload execution = 44095 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,273 | INFO     | . stage-out = 3 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,273 | INFO     | . log creation = 0 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,273 | INFO     | ..............................
[2025-11-19 20:28:22] 2025-11-20 01:27:43,401 | INFO     | 
[2025-11-19 20:28:22] 2025-11-20 01:27:43,401 | INFO     | job summary report
[2025-11-19 20:28:22] 2025-11-20 01:27:43,402 | INFO     | --------------------------------------------------
[2025-11-19 20:28:22] 2025-11-20 01:27:43,402 | INFO     | PanDA job id: 6891591091
[2025-11-19 20:28:22] 2025-11-20 01:27:43,402 | INFO     | task id: 47493068
[2025-11-19 20:28:22] 2025-11-20 01:27:43,402 | INFO     | errors: (none)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,402 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-19 20:28:22] 2025-11-20 01:27:43,403 | INFO     | pilot state: finished 
[2025-11-19 20:28:22] 2025-11-20 01:27:43,403 | INFO     | transexitcode: 0
[2025-11-19 20:28:22] 2025-11-20 01:27:43,403 | INFO     | exeerrorcode: 0
[2025-11-19 20:28:22] 2025-11-20 01:27:43,403 | INFO     | exeerrordiag: 
[2025-11-19 20:28:22] 2025-11-20 01:27:43,403 | INFO     | exitcode: 0
[2025-11-19 20:28:22] 2025-11-20 01:27:43,403 | INFO     | exitmsg: OK
[2025-11-19 20:28:22] 2025-11-20 01:27:43,403 | INFO     | cpuconsumptiontime: 341167 s
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | nevents: 1000
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | neventsw: 0
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | pid: 2933
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | pgrp: 2933
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | corecount: 8
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | event service: False
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | sizes: {0: 2296978, 1: 2297177, 7: 2297439, 11: 2297467, 44108: 2343045, 44112: 2352039, 44115: 2352223, 44122: 2352469}
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | --------------------------------------------------
[2025-11-19 20:28:22] 2025-11-20 01:27:43,404 | INFO     | 
[2025-11-19 20:28:22] 2025-11-20 01:27:43,405 | INFO     | executing command: ls -lF /tmp/boinchome/slots/0
[2025-11-19 20:28:22] 2025-11-20 01:27:43,433 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,434 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,434 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,434 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,435 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,435 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,435 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,435 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,435 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,436 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,436 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,436 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,436 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,436 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,437 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,437 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,437 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,437 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,437 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,437 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-19 20:28:22] 2025-11-20 01:27:43,438 | INFO     | job 6891591091 has completed (purged errors)
[2025-11-19 20:28:22] 2025-11-20 01:27:43,438 | INFO     | overall cleanup function is called
[2025-11-19 20:28:22] 2025-11-20 01:27:44,455 | INFO     | --- collectZombieJob: --- 10, [2933]
[2025-11-19 20:28:22] 2025-11-20 01:27:44,456 | INFO     | zombie collector waiting for pid 2933
[2025-11-19 20:28:22] 2025-11-20 01:27:44,456 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-19 20:28:22] 2025-11-20 01:27:44,456 | INFO     | collected zombie processes
[2025-11-19 20:28:22] 2025-11-20 01:27:44,456 | INFO     | will attempt to kill all subprocesses of pid=2933
[2025-11-19 20:28:22] 2025-11-20 01:27:44,552 | INFO     | process IDs to be killed: [2933] (in reverse order)
[2025-11-19 20:28:22] 2025-11-20 01:27:44,609 | WARNING  | found no corresponding commands to process id(s)
[2025-11-19 20:28:22] 2025-11-20 01:27:44,610 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-19 20:28:22] 2025-11-20 01:27:44,614 | INFO     | did not find any defunct processes belonging to 2933
[2025-11-19 20:28:22] 2025-11-20 01:27:44,617 | INFO     | did not find any defunct processes belonging to 2933
[2025-11-19 20:28:22] 2025-11-20 01:27:44,620 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-19 20:28:22] 2025-11-20 01:27:44,620 | INFO     | ready for new job
[2025-11-19 20:28:22] 2025-11-20 01:27:44,620 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-19 20:28:22] 2025-11-20 01:27:44,624 | INFO     | ***************************************
[2025-11-19 20:28:22] 2025-11-20 01:27:44,624 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-19 20:28:22] 2025-11-20 01:27:44,624 | INFO     | ***************************************
[2025-11-19 20:28:22] 2025-11-20 01:27:44,625 | INFO     | 
[2025-11-19 20:28:22] 2025-11-20 01:27:44,625 | INFO     | architecture information:
[2025-11-19 20:28:22] 2025-11-20 01:27:44,626 | INFO     | executing command: cat /etc/os-release
[2025-11-19 20:28:22] 2025-11-20 01:27:44,643 | INFO     | cat /etc/os-release:
[2025-11-19 20:28:22] NAME="CentOS Linux"
[2025-11-19 20:28:22] VERSION="7 (Core)"
[2025-11-19 20:28:22] ID="centos"
[2025-11-19 20:28:22] ID_LIKE="rhel fedora"
[2025-11-19 20:28:22] VERSION_ID="7"
[2025-11-19 20:28:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-19 20:28:22] ANSI_COLOR="0;31"
[2025-11-19 20:28:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-19 20:28:22] HOME_URL="https://www.centos.org/"
[2025-11-19 20:28:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-19 20:28:22] 
[2025-11-19 20:28:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-19 20:28:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-19 20:28:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-19 20:28:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-19 20:28:22] 
[2025-11-19 20:28:22] 2025-11-20 01:27:44,644 | INFO     | ***************************************
[2025-11-19 20:28:22] 2025-11-20 01:27:45,147 | INFO     | executing command: df -mP /tmp/boinchome/slots/0
[2025-11-19 20:28:22] 2025-11-20 01:27:45,167 | INFO     | sufficient remaining disk space (17026777088 B)
[2025-11-19 20:28:22] 2025-11-20 01:27:45,168 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-19 20:28:22] 2025-11-20 01:27:45,168 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 20:28:22] 2025-11-20 01:27:45,168 | INFO     | update_server=False
[2025-11-19 20:28:22] 2025-11-20 01:27:45,168 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 20:28:22] 2025-11-20 01:27:45,169 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 20:28:22] 2025-11-20 01:27:46,023 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 20:28:22] 2025-11-20 01:27:46,025 | INFO     | aborting loop
[2025-11-19 20:28:22] 2025-11-20 01:27:46,094 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 20:28:22] 2025-11-20 01:27:46,174 | INFO     | [job] retrieve thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:46,175 | INFO     | [job] queue monitor thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:46,249 | INFO     | all data control threads have been joined
[2025-11-19 20:28:22] 2025-11-20 01:27:46,348 | INFO     | all payload control threads have been joined
[2025-11-19 20:28:22] 2025-11-20 01:27:46,369 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:46,451 | INFO     | all job control threads have been joined
[2025-11-19 20:28:22] 2025-11-20 01:27:46,471 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 20:28:22] 2025-11-20 01:27:46,684 | INFO     | [data] copytool_in thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:46,874 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:46,967 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,031 | INFO     | [job] job monitor thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,150 | INFO     | [payload] failed_post thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,255 | INFO     | [data] control thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,353 | INFO     | [payload] control thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,457 | INFO     | [job] control thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,541 | INFO     | [payload] validate_post thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,560 | INFO     | [job] validate thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:47,568 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:48,095 | INFO     | [data] copytool_out thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:27:50,477 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 20:28:22] 2025-11-20 01:28:14,998 | INFO     | PID=27779 has CPU usage=2.3% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-19 20:28:22] 2025-11-20 01:28:15,000 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 20:28:22] 2025-11-20 01:28:15,000 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 20:28:22] 2025-11-20 01:28:15,000 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 20:28:22] 2025-11-20 01:28:16,616 | INFO     | [monitor] cgroup control has ended
[2025-11-19 20:28:22] 2025-11-20 01:28:17,281 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140180264601408)>', '<ExcThread(monitor, started 140179058710272)>']
[2025-11-19 20:28:22] 2025-11-20 01:28:18,016 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 20:28:22] 2025-11-20 01:28:18,016 | INFO     | [monitor] control thread has ended
[2025-11-19 20:28:22] 2025-11-20 01:28:22,306 | INFO     | all workflow threads have been joined
[2025-11-19 20:28:22] 2025-11-20 01:28:22,307 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 20:28:22] 2025-11-20 01:28:22,308 | INFO     | traces error code: 0
[2025-11-19 20:28:22] 2025-11-20 01:28:22,308 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 20:28:22] 2025-11-20 01:28:22,433 [wrapper] ==== pilot stdout END ====
[2025-11-19 20:28:22] 2025-11-20 01:28:22,438 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 20:28:22] 2025-11-20 01:28:22,443 [wrapper] pilotpid: 27779
[2025-11-19 20:28:22] 2025-11-20 01:28:22,447 [wrapper] Pilot exit status: 0
[2025-11-19 20:28:22] 2025-11-20 01:28:22,462 [wrapper] pandaids: 6891591091 6891591091
[2025-11-19 20:28:22] 2025-11-20 01:28:22,513 [wrapper] cleanup supervisor_pilot 21750 27780
[2025-11-19 20:28:22] 2025-11-20 01:28:22,518 [wrapper] Test setup, not cleaning
[2025-11-19 20:28:22] 2025-11-20 01:28:22,523 [wrapper] apfmon messages muted
[2025-11-19 20:28:22] 2025-11-20 01:28:22,529 [wrapper] ==== wrapper stdout END ====
[2025-11-19 20:28:22] 2025-11-20 01:28:22,534 [wrapper] ==== wrapper stderr END ====
[2025-11-19 20:28:22]  *** Error codes and diagnostics ***
[2025-11-19 20:28:22]     "exeErrorCode": 0,
[2025-11-19 20:28:22]     "exeErrorDiag": "",
[2025-11-19 20:28:22]     "pilotErrorCode": 0,
[2025-11-19 20:28:22]     "pilotErrorDiag": "",
[2025-11-19 20:28:22]  *** Listing of results directory ***
[2025-11-19 20:28:22] total 1709772
[2025-11-19 20:28:22] drwx------ 5 boincer umatlas      4096 Nov  5 12:16 pilot3
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas    576529 Nov 18 12:59 pilot3.tar.gz
[2025-11-19 20:28:22] -rwx------ 1 boincer umatlas     36292 Nov 18 13:05 runpilot2-wrapper.sh
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas      5112 Nov 18 13:05 queuedata.json
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas       100 Nov 18 22:49 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 20:28:22] -rwxr-xr-x 1 boincer umatlas      7986 Nov 18 22:49 run_atlas
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas       105 Nov 18 22:49 job.xml
[2025-11-19 20:28:22] -rw-r--r-- 3 boincer umatlas 410807282 Nov 18 22:49 EVNT.47493065._000611.pool.root.1
[2025-11-19 20:28:22] -rw-r--r-- 3 boincer umatlas 410807282 Nov 18 22:49 ATLAS.root_0
[2025-11-19 20:28:22] -rw-r--r-- 2 boincer umatlas     15120 Nov 18 22:49 start_atlas.sh
[2025-11-19 20:28:22] drwxrwx--x 2 boincer umatlas      4096 Nov 18 22:49 shared
[2025-11-19 20:28:22] -rw-r--r-- 2 boincer umatlas    590088 Nov 18 22:49 input.tar.gz
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas         0 Nov 18 22:49 boinc_lockfile
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas      2772 Nov 19 08:11 pandaJob.out
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas    989442 Nov 19 08:12 agis_schedconf.cvmfs.json
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas       533 Nov 19 20:18 boinc_task_state.xml
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas      5912 Nov 19 20:22 init_data.xml
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas 909204217 Nov 19 20:26 HITS.47493068._005606.pool.root.1
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas      1063 Nov 19 20:27 memory_monitor_summary.json
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas   1525063 Nov 19 20:27 agis_ddmendpoints.agis.ALL.json
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas   1965821 Nov 19 20:27 log.47493068._005606.job.log.tgz.1
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas      8659 Nov 19 20:27 heartbeat.json
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas      8192 Nov 19 20:27 boinc_mmap_file
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas        29 Nov 19 20:27 wrapper_checkpoint.txt
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas        96 Nov 19 20:28 pilot_heartbeat.json
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas      4746 Nov 19 20:28 pilotlog.txt
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas   6066416 Nov 19 20:28 log.47493068._005606.job.log.1
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas       353 Nov 19 20:28 output.list
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas       620 Nov 19 20:28 runtime_log
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas   8048640 Nov 19 20:28 result.tar.gz
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas       793 Nov 19 20:28 rf8KDmyFff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqAGKDmifjEQm.diag
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas      8789 Nov 19 20:28 runtime_log.err
[2025-11-19 20:28:22] -rw-r--r-- 1 boincer umatlas     23478 Nov 19 20:28 stderr.txt
[2025-11-19 20:28:22] HITS file was successfully produced:
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas 909204217 Nov 19 20:26 shared/HITS.pool.root.1
[2025-11-19 20:28:22]  *** Contents of shared directory: ***
[2025-11-19 20:28:22] total 1297540
[2025-11-19 20:28:22] -rw-r--r-- 3 boincer umatlas 410807282 Nov 18 22:49 ATLAS.root_0
[2025-11-19 20:28:22] -rw-r--r-- 2 boincer umatlas     15120 Nov 18 22:49 start_atlas.sh
[2025-11-19 20:28:22] -rw-r--r-- 2 boincer umatlas    590088 Nov 18 22:49 input.tar.gz
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas 909204217 Nov 19 20:26 HITS.pool.root.1
[2025-11-19 20:28:22] -rw------- 1 boincer umatlas   8048640 Nov 19 20:28 result.tar.gz
20:28:23 (23854): run_atlas exited; CPU time 339004.371760
20:28:23 (23854): called boinc_finish(0)

</stderr_txt>
]]>

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