Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:50:16 (1823134): wrapper (7.7.26015): starting
05:50:16 (1823134): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 05:50:16] Arguments: --nthreads 3
[2025-11-20 05:50:16] Threads: 3
[2025-11-20 05:50:16] Checking for CVMFS
[2025-11-20 05:50:16] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:50:16] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:50:16] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:50:16] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:50:16] 2.9.2.0 1559605 1982 67112 153067 0 81 35908208 36864000 0 130560 0 731096 99.717 257992 8768 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 05:50:16] CVMFS is ok
[2025-11-20 05:50:16] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:50:16] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 05:50:16] Further information can be found at the LHC@home message board.
[2025-11-20 05:50:16] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:50:16] Checking for apptainer binary...
[2025-11-20 05:50:16] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 05:50:16] Running /usr/bin/apptainer --version
[2025-11-20 05:50:16] apptainer version 1.4.1-1.1
[2025-11-20 05:50:16] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:50:16] atlasA223
[2025-11-20 05:50:16] apptainer works
[2025-11-20 05:50:16] Set ATHENA_PROC_NUMBER=3
[2025-11-20 05:50:16] Set ATHENA_CORE_NUMBER=3
[2025-11-20 05:50:16] Starting ATLAS job with PandaID=6891589354
[2025-11-20 05:50:16] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 14:13:02]  *** The last 200 lines of the pilot log: ***
[2025-11-20 14:13:02] 2025-11-20 13:11:59,581 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 14:13:02] 2025-11-20 13:11:59,583 | INFO     | did not find any defunct processes belonging to 1833310
[2025-11-20 14:13:02] 2025-11-20 13:11:59,584 | INFO     | did not find any defunct processes belonging to 1833310
[2025-11-20 14:13:02] 2025-11-20 13:11:59,584 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 14:13:02] 2025-11-20 13:11:59,584 | INFO     | ready for new job
[2025-11-20 14:13:02] 2025-11-20 13:11:59,584 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 14:13:02] 2025-11-20 13:11:59,585 | INFO     | ***************************************
[2025-11-20 14:13:02] 2025-11-20 13:11:59,585 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 14:13:02] 2025-11-20 13:11:59,586 | INFO     | ***************************************
[2025-11-20 14:13:02] 2025-11-20 13:11:59,586 | INFO     | 
[2025-11-20 14:13:02] 2025-11-20 13:11:59,586 | INFO     | architecture information:
[2025-11-20 14:13:02] 2025-11-20 13:11:59,586 | INFO     | executing command: cat /etc/os-release
[2025-11-20 14:13:02] 2025-11-20 13:11:59,594 | INFO     | cat /etc/os-release:
[2025-11-20 14:13:02] NAME="CentOS Linux"
[2025-11-20 14:13:02] VERSION="7 (Core)"
[2025-11-20 14:13:02] ID="centos"
[2025-11-20 14:13:02] ID_LIKE="rhel fedora"
[2025-11-20 14:13:02] VERSION_ID="7"
[2025-11-20 14:13:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 14:13:02] ANSI_COLOR="0;31"
[2025-11-20 14:13:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 14:13:02] HOME_URL="https://www.centos.org/"
[2025-11-20 14:13:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 14:13:02] 
[2025-11-20 14:13:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 14:13:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 14:13:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 14:13:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 14:13:02] 
[2025-11-20 14:13:02] 2025-11-20 13:11:59,595 | INFO     | ***************************************
[2025-11-20 14:13:02] 2025-11-20 13:12:00,098 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 14:13:02] 2025-11-20 13:12:00,110 | INFO     | sufficient remaining disk space (365904789504 B)
[2025-11-20 14:13:02] 2025-11-20 13:12:00,111 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 14:13:02] 2025-11-20 13:12:00,111 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 14:13:02] 2025-11-20 13:12:00,111 | INFO     | update_server=False
[2025-11-20 14:13:02] 2025-11-20 13:12:00,111 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 14:13:02] 2025-11-20 13:12:00,111 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:13:02] 2025-11-20 13:12:00,111 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 14:13:02] 2025-11-20 13:12:00,111 | INFO     | aborting loop
[2025-11-20 14:13:02] 2025-11-20 13:12:00,283 | INFO     | all payload control threads have been joined
[2025-11-20 14:13:02] 2025-11-20 13:12:00,953 | INFO     | all data control threads have been joined
[2025-11-20 14:13:02] 2025-11-20 13:12:00,976 | INFO     | all job control threads have been joined
[2025-11-20 14:13:02] 2025-11-20 13:12:01,116 | INFO     | [job] job monitor thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,116 | INFO     | [job] retrieve thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,116 | INFO     | [job] queue monitor thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,289 | INFO     | [payload] control thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,458 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 14:13:02] 2025-11-20 13:12:01,554 | INFO     | [payload] failed_post thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,572 | INFO     | [data] copytool_in thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,844 | INFO     | [job] validate thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,901 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,958 | INFO     | [data] control thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:01,981 | INFO     | [job] control thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:02,033 | INFO     | [payload] validate_post thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:02,072 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:02,108 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:02,223 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:03,464 | INFO     | [data] copytool_out thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:03,484 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 14:13:02] 2025-11-20 13:12:07,491 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 14:13:02] 2025-11-20 13:12:30,355 | INFO     | PID=1826858 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 14:13:02] 2025-11-20 13:12:30,355 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 14:13:02] 2025-11-20 13:12:30,355 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 14:13:02] 2025-11-20 13:12:30,355 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 14:13:02] 2025-11-20 13:12:56,030 | INFO     | [monitor] cgroup control has ended
[2025-11-20 14:13:02] 2025-11-20 13:12:57,776 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140394064140096)>', '<ExcThread(monitor, started 140393714788096)>']
[2025-11-20 14:13:02] 2025-11-20 13:12:58,495 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 14:13:02] 2025-11-20 13:12:58,496 | INFO     | [monitor] control thread has ended
[2025-11-20 14:13:02] 2025-11-20 13:13:02,781 | INFO     | all workflow threads have been joined
[2025-11-20 14:13:02] 2025-11-20 13:13:02,781 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 14:13:02] 2025-11-20 13:13:02,782 | INFO     | traces error code: 0
[2025-11-20 14:13:02] 2025-11-20 13:13:02,782 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 14:13:02] 2025-11-20 13:13:02,831 [wrapper] ==== pilot stdout END ====
[2025-11-20 14:13:02] 2025-11-20 13:13:02,833 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 14:13:02] 2025-11-20 13:13:02,836 [wrapper] pilotpid: 1826858
[2025-11-20 14:13:02] 2025-11-20 13:13:02,838 [wrapper] Pilot exit status: 0
[2025-11-20 14:13:02] 2025-11-20 13:13:02,845 [wrapper] pandaids: 6891589354
[2025-11-20 14:13:02] 2025-11-20 13:13:02,862 [wrapper] cleanup supervisor_pilot 1888780 1826859
[2025-11-20 14:13:02] 2025-11-20 13:13:02,864 [wrapper] Test setup, not cleaning
[2025-11-20 14:13:02] 2025-11-20 13:13:02,867 [wrapper] apfmon messages muted
[2025-11-20 14:13:02] 2025-11-20 13:13:02,869 [wrapper] ==== wrapper stdout END ====
[2025-11-20 14:13:02] 2025-11-20 13:13:02,871 [wrapper] ==== wrapper stderr END ====
[2025-11-20 14:13:02]  *** Error codes and diagnostics ***
[2025-11-20 14:13:02]     "exeErrorCode": 0,
[2025-11-20 14:13:02]     "exeErrorDiag": "",
[2025-11-20 14:13:02]     "pilotErrorCode": 0,
[2025-11-20 14:13:02]     "pilotErrorDiag": "",
[2025-11-20 14:13:02]  *** Listing of results directory ***
[2025-11-20 14:13:02] total 1329940
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc    576529 Nov 18 18:46 pilot3.tar.gz
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:52 queuedata.json
[2025-11-20 14:13:02] -rwx------ 1 boinc boinc     36292 Nov 18 18:53 runpilot2-wrapper.sh
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc       100 Nov 20 05:50 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 14:13:02] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 05:50 run_atlas
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc       105 Nov 20 05:50 job.xml
[2025-11-20 14:13:02] -rw-r--r-- 2 boinc boinc 412434103 Nov 20 05:50 EVNT.47493065._000534.pool.root.1
[2025-11-20 14:13:02] -rw-r--r-- 2 boinc boinc    590102 Nov 20 05:50 input.tar.gz
[2025-11-20 14:13:02] -rw-r--r-- 2 boinc boinc     15120 Nov 20 05:50 start_atlas.sh
[2025-11-20 14:13:02] drwxrwx--x 2 boinc boinc      4096 Nov 20 05:50 shared
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc         0 Nov 20 05:50 boinc_setup_complete
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc      6445 Nov 20 05:50 init_data.xml
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc         0 Nov 20 05:50 boinc_lockfile
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc      2773 Nov 20 05:50 pandaJob.out
[2025-11-20 14:13:02] -rw------- 1 boinc boinc    989427 Nov 20 05:50 agis_schedconf.cvmfs.json
[2025-11-20 14:13:02] drwx------ 5 boinc boinc      4096 Nov 20 05:50 pilot3
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc       531 Nov 20 14:08 boinc_task_state.xml
[2025-11-20 14:13:02] -rw------- 1 boinc boinc 934695757 Nov 20 14:11 HITS.47493068._005336.pool.root.1
[2025-11-20 14:13:02] -rw------- 1 boinc boinc      1021 Nov 20 14:11 memory_monitor_summary.json
[2025-11-20 14:13:02] -rw------- 1 boinc boinc   1526164 Nov 20 14:11 agis_ddmendpoints.agis.ALL.json
[2025-11-20 14:13:02] -rw------- 1 boinc boinc   1172100 Nov 20 14:11 log.47493068._005336.job.log.tgz.1
[2025-11-20 14:13:02] -rw------- 1 boinc boinc        95 Nov 20 14:11 pilot_heartbeat.json
[2025-11-20 14:13:02] -rw------- 1 boinc boinc      8565 Nov 20 14:11 heartbeat.json
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc        28 Nov 20 14:13 wrapper_checkpoint.txt
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc      8192 Nov 20 14:13 boinc_mmap_file
[2025-11-20 14:13:02] -rw------- 1 boinc boinc      4752 Nov 20 14:13 pilotlog.txt
[2025-11-20 14:13:02] -rw------- 1 boinc boinc   4235924 Nov 20 14:13 log.47493068._005336.job.log.1
[2025-11-20 14:13:02] -rw------- 1 boinc boinc       353 Nov 20 14:13 output.list
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc       620 Nov 20 14:13 runtime_log
[2025-11-20 14:13:02] -rw------- 1 boinc boinc   5427200 Nov 20 14:13 result.tar.gz
[2025-11-20 14:13:02] -rw------- 1 boinc boinc       668 Nov 20 14:13 vpcMDmO4ef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmCdFKDmmROk7n.diag
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc      8793 Nov 20 14:13 runtime_log.err
[2025-11-20 14:13:02] -rw-r--r-- 1 boinc boinc     10087 Nov 20 14:13 stderr.txt
[2025-11-20 14:13:02] HITS file was successfully produced:
[2025-11-20 14:13:02] -rw------- 1 boinc boinc 934695757 Nov 20 14:11 shared/HITS.pool.root.1
[2025-11-20 14:13:02]  *** Contents of shared directory: ***
[2025-11-20 14:13:02] total 1321464
[2025-11-20 14:13:02] -rw-r--r-- 2 boinc boinc 412434103 Nov 20 05:50 ATLAS.root_0
[2025-11-20 14:13:02] -rw-r--r-- 2 boinc boinc    590102 Nov 20 05:50 input.tar.gz
[2025-11-20 14:13:02] -rw-r--r-- 2 boinc boinc     15120 Nov 20 05:50 start_atlas.sh
[2025-11-20 14:13:02] -rw------- 1 boinc boinc 934695757 Nov 20 14:11 HITS.pool.root.1
[2025-11-20 14:13:02] -rw------- 1 boinc boinc   5427200 Nov 20 14:13 result.tar.gz
14:13:04 (1823134): run_atlas exited; CPU time 88984.393306
14:13:04 (1823134): called boinc_finish(0)

</stderr_txt>
]]>

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