Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
05:04:25 (2614688): wrapper (7.7.26015): starting
05:04:25 (2614688): wrapper: running run_atlas (--nthreads 3)
[2025-11-19 05:04:25] Arguments: --nthreads 3
[2025-11-19 05:04:25] Threads: 3
[2025-11-19 05:04:25] Checking for CVMFS
[2025-11-19 05:04:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 05:04:25] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 05:04:25] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 05:04:25] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 05:04:25] 2.9.2.0 4099368 585 75000 153028 1 88 34205911 36864000 0 130560 0 8142513 99.983 153227 3734 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-19 05:04:25] CVMFS is ok
[2025-11-19 05:04:25] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 05:04:25] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 05:04:25] Further information can be found at the LHC@home message board.
[2025-11-19 05:04:25] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 05:04:25] Checking for apptainer binary...
[2025-11-19 05:04:25] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 05:04:25] Running /usr/bin/apptainer --version
[2025-11-19 05:04:25] apptainer version 1.4.1-1.1
[2025-11-19 05:04:25] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 05:04:25] thA335
[2025-11-19 05:04:25] apptainer works
[2025-11-19 05:04:25] Set ATHENA_PROC_NUMBER=3
[2025-11-19 05:04:25] Set ATHENA_CORE_NUMBER=3
[2025-11-19 05:04:25] Starting ATLAS job with PandaID=6891576640
[2025-11-19 05:04:25] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-19 05:08:44]  *** The last 200 lines of the pilot log: ***
[2025-11-19 05:08:44] 2025-11-19 04:07:52,528 | INFO     | current server update state: UPDATING_FINAL
[2025-11-19 05:08:44] 2025-11-19 04:07:52,528 | INFO     | update_server=False
[2025-11-19 05:08:44] 2025-11-19 04:07:52,528 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-19 05:08:44] 2025-11-19 04:07:52,528 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-19 05:08:44] 2025-11-19 04:07:52,772 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-19 05:08:44] 2025-11-19 04:07:52,892 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-19 05:08:44] 2025-11-19 04:07:52,892 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-19 05:08:44] 2025-11-19 04:07:52,894 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-19 05:08:44] 2025-11-19 04:07:52,894 | INFO     | will abort loop
[2025-11-19 05:08:44] 2025-11-19 04:07:53,168 | INFO     | all data control threads have been joined
[2025-11-19 05:08:44] 2025-11-19 04:07:53,468 | INFO     | all payload control threads have been joined
[2025-11-19 05:08:44] 2025-11-19 04:07:53,534 | INFO     | [job] retrieve thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:53,535 | INFO     | [job] queue monitor thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:53,900 | INFO     | [job] job monitor thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,038 | INFO     | all job control threads have been joined
[2025-11-19 05:08:44] 2025-11-19 04:07:54,110 | INFO     | [payload] execute_payloads thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,117 | INFO     | [payload] validate_post thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,174 | INFO     | [data] control thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,260 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,462 | INFO     | [job] validate thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,471 | INFO     | [payload] control thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,543 | INFO     | [job] create_data_payload thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,601 | INFO     | [payload] validate_pre thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,665 | INFO     | [payload] failed_post thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,701 | INFO     | [data] copytool_in thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:54,779 | INFO     | [data] copytool_out thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:55,044 | INFO     | [job] control thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:07:55,153 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-19 05:08:44] 2025-11-19 04:07:59,161 | INFO     | [data] queue_monitor thread has finished
[2025-11-19 05:08:44] 2025-11-19 04:08:22,628 | INFO     | PID=2618425 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-19 05:08:44] 2025-11-19 04:08:22,628 | INFO     | found 0 job(s) in 20 queues
[2025-11-19 05:08:44] 2025-11-19 04:08:22,628 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-19 05:08:44] 2025-11-19 04:08:22,629 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-19 05:08:44] 2025-11-19 04:08:37,681 | INFO     | [monitor] cgroup control has ended
[2025-11-19 05:08:44] 2025-11-19 04:08:39,031 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140349435410240)>', '<ExcThread(monitor, started 140348726703872)>']
[2025-11-19 05:08:44] 2025-11-19 04:08:39,719 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-19 05:08:44] 2025-11-19 04:08:39,719 | INFO     | [monitor] control thread has ended
[2025-11-19 05:08:44] 2025-11-19 04:08:44,058 | INFO     | all workflow threads have been joined
[2025-11-19 05:08:44] 2025-11-19 04:08:44,059 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-19 05:08:44] 2025-11-19 04:08:44,060 | INFO     | traces error code: 0
[2025-11-19 05:08:44] 2025-11-19 04:08:44,060 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-19 05:08:44] 2025-11-19 04:08:44,105 [wrapper] ==== pilot stdout END ====
[2025-11-19 05:08:44] 2025-11-19 04:08:44,108 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-19 05:08:44] 2025-11-19 04:08:44,111 [wrapper] pilotpid: 2618425
[2025-11-19 05:08:44] 2025-11-19 04:08:44,114 [wrapper] Pilot exit status: 0
[2025-11-19 05:08:44] 2025-11-19 04:08:44,121 [wrapper] pandaids: 6891576640
[2025-11-19 05:08:44] 2025-11-19 04:08:44,136 [wrapper] cleanup supervisor_pilot 2618431 2618426
[2025-11-19 05:08:44] 2025-11-19 04:08:44,138 [wrapper] Test setup, not cleaning
[2025-11-19 05:08:44] 2025-11-19 04:08:44,141 [wrapper] apfmon messages muted
[2025-11-19 05:08:44] 2025-11-19 04:08:44,144 [wrapper] ==== wrapper stdout END ====
[2025-11-19 05:08:44] 2025-11-19 04:08:44,146 [wrapper] ==== wrapper stderr END ====
[2025-11-19 05:08:44]  *** Error codes and diagnostics ***
[2025-11-19 05:08:44]     "exeErrorCode": 65,
[2025-11-19 05:08:44]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 05:08:44]     "pilotErrorCode": 1305,
[2025-11-19 05:08:44]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (8); Logfile error in log.EVNTtoHITS: \"problem in C++; program state has been reset\"",
[2025-11-19 05:08:44]  *** Listing of results directory ***
[2025-11-19 05:08:44] total 402916
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:24 pilot3.tar.gz
[2025-11-19 05:08:44] -rwx------ 1 boinc boinc     36292 Nov 18 17:43 runpilot2-wrapper.sh
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc      5112 Nov 18 17:43 queuedata.json
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc       100 Nov 19 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-19 05:08:44] -rwxr-xr-x 1 boinc boinc      7986 Nov 19 05:04 run_atlas
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc       105 Nov 19 05:04 job.xml
[2025-11-19 05:08:44] -rw-r--r-- 2 boinc boinc 408395941 Nov 19 05:04 EVNT.47493065._000374.pool.root.1
[2025-11-19 05:08:44] -rw-r--r-- 2 boinc boinc    590094 Nov 19 05:04 input.tar.gz
[2025-11-19 05:08:44] -rw-r--r-- 2 boinc boinc     15120 Nov 19 05:04 start_atlas.sh
[2025-11-19 05:08:44] drwxrwx--x 2 boinc boinc      4096 Nov 19 05:04 shared
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc         0 Nov 19 05:04 boinc_setup_complete
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc      6194 Nov 19 05:04 init_data.xml
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc         0 Nov 19 05:04 boinc_lockfile
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc      2773 Nov 19 05:04 pandaJob.out
[2025-11-19 05:08:44] -rw------- 1 boinc boinc    992806 Nov 19 05:04 agis_schedconf.cvmfs.json
[2025-11-19 05:08:44] -rw------- 1 boinc boinc   1525063 Nov 19 05:04 agis_ddmendpoints.agis.ALL.json
[2025-11-19 05:08:44] drwx------ 5 boinc boinc      4096 Nov 19 05:04 pilot3
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc       523 Nov 19 05:05 boinc_task_state.xml
[2025-11-19 05:08:44] -rw------- 1 boinc boinc       945 Nov 19 05:05 memory_monitor_summary.json
[2025-11-19 05:08:44] -rw------- 1 boinc boinc     55742 Nov 19 05:05 log.47493068._003735.job.log.tgz.1
[2025-11-19 05:08:44] -rw------- 1 boinc boinc        95 Nov 19 05:07 pilot_heartbeat.json
[2025-11-19 05:08:44] -rw------- 1 boinc boinc      8403 Nov 19 05:07 heartbeat.json
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc      8192 Nov 19 05:08 boinc_mmap_file
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc        22 Nov 19 05:08 wrapper_checkpoint.txt
[2025-11-19 05:08:44] -rw------- 1 boinc boinc      4938 Nov 19 05:08 pilotlog.txt
[2025-11-19 05:08:44] -rw------- 1 boinc boinc     93551 Nov 19 05:08 log.47493068._003735.job.log.1
[2025-11-19 05:08:44] -rw------- 1 boinc boinc       186 Nov 19 05:08 output.list
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc       620 Nov 19 05:08 runtime_log
[2025-11-19 05:08:44] -rw------- 1 boinc boinc    163840 Nov 19 05:08 result.tar.gz
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc      8624 Nov 19 05:08 runtime_log.err
[2025-11-19 05:08:44] -rw------- 1 boinc boinc       649 Nov 19 05:08 OAQMDmDzdf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmqrFKDmCwiQNn.diag
[2025-11-19 05:08:44] -rw-r--r-- 1 boinc boinc      8123 Nov 19 05:08 stderr.txt
[2025-11-19 05:08:44] No HITS result produced
[2025-11-19 05:08:44]  *** Contents of shared directory: ***
[2025-11-19 05:08:44] total 399584
[2025-11-19 05:08:44] -rw-r--r-- 2 boinc boinc 408395941 Nov 19 05:04 ATLAS.root_0
[2025-11-19 05:08:44] -rw-r--r-- 2 boinc boinc    590094 Nov 19 05:04 input.tar.gz
[2025-11-19 05:08:44] -rw-r--r-- 2 boinc boinc     15120 Nov 19 05:04 start_atlas.sh
[2025-11-19 05:08:44] -rw------- 1 boinc boinc    163840 Nov 19 05:08 result.tar.gz
05:08:45 (2614688): run_atlas exited; CPU time 31.580057
05:08:45 (2614688): called boinc_finish(0)

</stderr_txt>
]]>

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