Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
18:18:15 (90406): wrapper (7.7.26015): starting
18:18:15 (90406): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 18:18:15] Arguments: --nthreads 4
[2025-11-21 18:18:15] Threads: 4
[2025-11-21 18:18:15] Checking for CVMFS
[2025-11-21 18:18:15] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 18:18:15] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 18:18:15] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 18:18:15] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 18:18:15] 2.9.2.0 3120 419 37364 153128 0 77 26639080 36864000 0 130560 0 214911 99.980 8203 8926 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 18:18:15] CVMFS is ok
[2025-11-21 18:18:15] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 18:18:15] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 18:18:15] Further information can be found at the LHC@home message board.
[2025-11-21 18:18:15] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 18:18:15] Checking for apptainer binary...
[2025-11-21 18:18:15] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 18:18:15] Running /usr/bin/apptainer --version
[2025-11-21 18:18:15] apptainer version 1.4.1-1.1
[2025-11-21 18:18:15] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 18:18:15] thA373a
[2025-11-21 18:18:15] apptainer works
[2025-11-21 18:18:15] Set ATHENA_PROC_NUMBER=4
[2025-11-21 18:18:15] Set ATHENA_CORE_NUMBER=4
[2025-11-21 18:18:15] Starting ATLAS job with PandaID=6891601827
[2025-11-21 18:18:15] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-22 01:13:01]  *** The last 200 lines of the pilot log: ***
[2025-11-22 01:13:01] 2025-11-22 00:12:28,262 | WARNING  | found no corresponding commands to process id(s)
[2025-11-22 01:13:01] 2025-11-22 00:12:28,263 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-22 01:13:01] 2025-11-22 00:12:28,265 | INFO     | did not find any defunct processes belonging to 100788
[2025-11-22 01:13:01] 2025-11-22 00:12:28,266 | INFO     | did not find any defunct processes belonging to 100788
[2025-11-22 01:13:01] 2025-11-22 00:12:28,267 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-22 01:13:01] 2025-11-22 00:12:28,267 | INFO     | ready for new job
[2025-11-22 01:13:01] 2025-11-22 00:12:28,267 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-22 01:13:01] 2025-11-22 00:12:28,268 | INFO     | ***************************************
[2025-11-22 01:13:01] 2025-11-22 00:12:28,268 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-22 01:13:01] 2025-11-22 00:12:28,268 | INFO     | ***************************************
[2025-11-22 01:13:01] 2025-11-22 00:12:28,268 | INFO     | 
[2025-11-22 01:13:01] 2025-11-22 00:12:28,269 | INFO     | architecture information:
[2025-11-22 01:13:01] 2025-11-22 00:12:28,269 | INFO     | executing command: cat /etc/os-release
[2025-11-22 01:13:01] 2025-11-22 00:12:28,284 | INFO     | cat /etc/os-release:
[2025-11-22 01:13:01] NAME="CentOS Linux"
[2025-11-22 01:13:01] VERSION="7 (Core)"
[2025-11-22 01:13:01] ID="centos"
[2025-11-22 01:13:01] ID_LIKE="rhel fedora"
[2025-11-22 01:13:01] VERSION_ID="7"
[2025-11-22 01:13:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-22 01:13:01] ANSI_COLOR="0;31"
[2025-11-22 01:13:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-22 01:13:01] HOME_URL="https://www.centos.org/"
[2025-11-22 01:13:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-22 01:13:01] 
[2025-11-22 01:13:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-22 01:13:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-22 01:13:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-22 01:13:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-22 01:13:01] 
[2025-11-22 01:13:01] 2025-11-22 00:12:28,284 | INFO     | ***************************************
[2025-11-22 01:13:01] 2025-11-22 00:12:28,787 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-22 01:13:01] 2025-11-22 00:12:28,803 | INFO     | sufficient remaining disk space (329748840448 B)
[2025-11-22 01:13:01] 2025-11-22 00:12:28,803 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | INFO     | current server update state: UPDATING_FINAL
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | INFO     | update_server=False
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | INFO     | aborting loop
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | WARNING  | aborting monitor loop since graceful_stop has been set (timing out remaining threads)
[2025-11-22 01:13:01] 2025-11-22 00:12:28,804 | INFO     | found 0 job(s) in 20 queues
[2025-11-22 01:13:01] 2025-11-22 00:12:28,805 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-22 01:13:01] 2025-11-22 00:12:28,805 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-22 01:13:01] 2025-11-22 00:12:29,437 | INFO     | all data control threads have been joined
[2025-11-22 01:13:01] 2025-11-22 00:12:29,664 | INFO     | all payload control threads have been joined
[2025-11-22 01:13:01] 2025-11-22 00:12:29,682 | INFO     | all job control threads have been joined
[2025-11-22 01:13:01] 2025-11-22 00:12:29,809 | INFO     | [job] retrieve thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:29,810 | INFO     | [job] queue monitor thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:29,810 | INFO     | [job] job monitor thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:29,865 | INFO     | [payload] execute_payloads thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:29,973 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-22 01:13:01] 2025-11-22 00:12:30,208 | INFO     | [job] create_data_payload thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:30,257 | INFO     | [job] validate thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:30,365 | INFO     | [payload] validate_pre thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:30,443 | INFO     | [data] control thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:30,510 | INFO     | [payload] validate_post thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:30,670 | INFO     | [payload] control thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:30,688 | INFO     | [job] control thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:31,045 | INFO     | [data] copytool_in thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:31,291 | INFO     | [payload] failed_post thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:31,979 | INFO     | [data] copytool_out thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:32,811 | INFO     | [data] queue_monitor thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:39,034 | INFO     | job.realtimelogging is not enabled
[2025-11-22 01:13:01] 2025-11-22 00:12:40,039 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-22 01:13:01] 2025-11-22 00:12:54,446 | INFO     | [monitor] cgroup control has ended
[2025-11-22 01:13:01] 2025-11-22 00:12:56,195 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139890457085760)>', '<ExcThread(monitor, started 139889148417792)>']
[2025-11-22 01:13:01] 2025-11-22 00:12:56,924 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-22 01:13:01] 2025-11-22 00:12:56,925 | INFO     | [monitor] control thread has ended
[2025-11-22 01:13:01] 2025-11-22 00:13:01,207 | INFO     | all workflow threads have been joined
[2025-11-22 01:13:01] 2025-11-22 00:13:01,207 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-22 01:13:01] 2025-11-22 00:13:01,207 | INFO     | traces error code: 0
[2025-11-22 01:13:01] 2025-11-22 00:13:01,207 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-22 01:13:01] 2025-11-22 00:13:01,289 [wrapper] ==== pilot stdout END ====
[2025-11-22 01:13:01] 2025-11-22 00:13:01,293 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-22 01:13:01] 2025-11-22 00:13:01,297 [wrapper] pilotpid: 94201
[2025-11-22 01:13:01] 2025-11-22 00:13:01,301 [wrapper] Pilot exit status: 0
[2025-11-22 01:13:01] 2025-11-22 00:13:01,313 [wrapper] pandaids: 6891601827
[2025-11-22 01:13:01] 2025-11-22 00:13:01,337 [wrapper] cleanup supervisor_pilot  152463 94202
[2025-11-22 01:13:01] 2025-11-22 00:13:01,342 [wrapper] Test setup, not cleaning
[2025-11-22 01:13:01] 2025-11-22 00:13:01,346 [wrapper] apfmon messages muted
[2025-11-22 01:13:01] 2025-11-22 00:13:01,350 [wrapper] ==== wrapper stdout END ====
[2025-11-22 01:13:01] 2025-11-22 00:13:01,354 [wrapper] ==== wrapper stderr END ====
[2025-11-22 01:13:01]  *** Error codes and diagnostics ***
[2025-11-22 01:13:01]     "exeErrorCode": 0,
[2025-11-22 01:13:01]     "exeErrorDiag": "",
[2025-11-22 01:13:01]     "pilotErrorCode": 0,
[2025-11-22 01:13:01]     "pilotErrorDiag": "",
[2025-11-22 01:13:01]  *** Listing of results directory ***
[2025-11-22 01:13:01] total 1312048
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-22 01:13:01] -rwx------ 1 boinc boinc     36292 Nov 18 20:20 runpilot2-wrapper.sh
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc      5112 Nov 18 20:20 queuedata.json
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc       100 Nov 21 18:18 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-22 01:13:01] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 18:18 run_atlas
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc       105 Nov 21 18:18 job.xml
[2025-11-22 01:13:01] -rw-r--r-- 2 boinc boinc 409650914 Nov 21 18:18 EVNT.47493065._000900.pool.root.1
[2025-11-22 01:13:01] drwxrwx--x 2 boinc boinc      4096 Nov 21 18:18 shared
[2025-11-22 01:13:01] -rw-r--r-- 2 boinc boinc    590096 Nov 21 18:18 input.tar.gz
[2025-11-22 01:13:01] -rw-r--r-- 2 boinc boinc     15120 Nov 21 18:18 start_atlas.sh
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc         0 Nov 21 18:18 boinc_setup_complete
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc      6377 Nov 21 18:18 init_data.xml
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc         0 Nov 21 18:18 boinc_lockfile
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc      2772 Nov 21 18:18 pandaJob.out
[2025-11-22 01:13:01] -rw------- 1 boinc boinc    989817 Nov 21 18:18 agis_schedconf.cvmfs.json
[2025-11-22 01:13:01] drwx------ 5 boinc boinc      4096 Nov 21 18:18 pilot3
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc       531 Nov 22 01:08 boinc_task_state.xml
[2025-11-22 01:13:01] -rw------- 1 boinc boinc        95 Nov 22 01:11 pilot_heartbeat.json
[2025-11-22 01:13:01] -rw------- 1 boinc boinc 920449627 Nov 22 01:11 HITS.47493068._007142.pool.root.1
[2025-11-22 01:13:01] -rw------- 1 boinc boinc      1032 Nov 22 01:12 memory_monitor_summary.json
[2025-11-22 01:13:01] -rw------- 1 boinc boinc   1526164 Nov 22 01:12 agis_ddmendpoints.agis.ALL.json
[2025-11-22 01:13:01] -rw------- 1 boinc boinc   1260494 Nov 22 01:12 log.47493068._007142.job.log.tgz.1
[2025-11-22 01:13:01] -rw------- 1 boinc boinc      8579 Nov 22 01:12 heartbeat.json
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc        28 Nov 22 01:12 wrapper_checkpoint.txt
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc      8192 Nov 22 01:12 boinc_mmap_file
[2025-11-22 01:13:01] -rw------- 1 boinc boinc      4628 Nov 22 01:13 pilotlog.txt
[2025-11-22 01:13:01] -rw------- 1 boinc boinc   3498309 Nov 22 01:13 log.47493068._007142.job.log.1
[2025-11-22 01:13:01] -rw------- 1 boinc boinc       353 Nov 22 01:13 output.list
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc       620 Nov 22 01:13 runtime_log
[2025-11-22 01:13:01] -rw------- 1 boinc boinc   4782080 Nov 22 01:13 result.tar.gz
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc      8783 Nov 22 01:13 runtime_log.err
[2025-11-22 01:13:01] -rw------- 1 boinc boinc       668 Nov 22 01:13 2rXLDmbQgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDm5RGKDm10xokn.diag
[2025-11-22 01:13:01] -rw-r--r-- 1 boinc boinc     10193 Nov 22 01:13 stderr.txt
[2025-11-22 01:13:01] HITS file was successfully produced:
[2025-11-22 01:13:01] -rw------- 1 boinc boinc 920449627 Nov 22 01:11 shared/HITS.pool.root.1
[2025-11-22 01:13:01]  *** Contents of shared directory: ***
[2025-11-22 01:13:01] total 1304208
[2025-11-22 01:13:01] -rw-r--r-- 2 boinc boinc 409650914 Nov 21 18:18 ATLAS.root_0
[2025-11-22 01:13:01] -rw-r--r-- 2 boinc boinc    590096 Nov 21 18:18 input.tar.gz
[2025-11-22 01:13:01] -rw-r--r-- 2 boinc boinc     15120 Nov 21 18:18 start_atlas.sh
[2025-11-22 01:13:01] -rw------- 1 boinc boinc 920449627 Nov 22 01:11 HITS.pool.root.1
[2025-11-22 01:13:01] -rw------- 1 boinc boinc   4782080 Nov 22 01:13 result.tar.gz
01:13:03 (90406): run_atlas exited; CPU time 97369.674142
01:13:03 (90406): called boinc_finish(0)

</stderr_txt>
]]>

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