Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
23:28:52 (3186617): wrapper (7.7.26015): starting
23:28:52 (3186617): wrapper: running run_atlas (--nthreads 2)
[2025-11-22 23:28:52] Arguments: --nthreads 2
[2025-11-22 23:28:52] Threads: 2
[2025-11-22 23:28:52] Checking for CVMFS
[2025-11-22 23:28:52] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-22 23:28:52] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-22 23:28:52] Running cvmfs_config stat atlas.cern.ch
[2025-11-22 23:28:52] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-22 23:28:52] 2.9.2.0 3000266 1500 52540 153187 2 81 35194950 36864001 0 130560 0 481392 99.977 57976 24503 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-22 23:28:52] CVMFS is ok
[2025-11-22 23:28:52] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-22 23:28:52] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-22 23:28:52] Further information can be found at the LHC@home message board.
[2025-11-22 23:28:52] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-22 23:28:52] Checking for apptainer binary...
[2025-11-22 23:28:52] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-22 23:28:52] Running /usr/bin/apptainer --version
[2025-11-22 23:28:52] apptainer version 1.4.1-1.1
[2025-11-22 23:28:52] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-22 23:28:53] thA310
[2025-11-22 23:28:53] apptainer works
[2025-11-22 23:28:53] Set ATHENA_PROC_NUMBER=2
[2025-11-22 23:28:53] Set ATHENA_CORE_NUMBER=2
[2025-11-22 23:28:53] Starting ATLAS job with PandaID=6891583861
[2025-11-22 23:28:53] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-23 11:49:26]  *** The last 200 lines of the pilot log: ***
[2025-11-23 11:49:26] 2025-11-23 10:48:54,074 | INFO     | job 6891583861 has completed (purged errors)
[2025-11-23 11:49:26] 2025-11-23 10:48:54,074 | INFO     | overall cleanup function is called
[2025-11-23 11:49:26] 2025-11-23 10:48:54,465 | INFO     | PID=3190347 has CPU usage=4.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 11:49:26] 2025-11-23 10:48:55,080 | INFO     | --- collectZombieJob: --- 10, [3196819]
[2025-11-23 11:49:26] 2025-11-23 10:48:55,081 | INFO     | zombie collector waiting for pid 3196819
[2025-11-23 11:49:26] 2025-11-23 10:48:55,081 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-23 11:49:26] 2025-11-23 10:48:55,081 | INFO     | collected zombie processes
[2025-11-23 11:49:26] 2025-11-23 10:48:55,081 | INFO     | will attempt to kill all subprocesses of pid=3196819
[2025-11-23 11:49:26] 2025-11-23 10:48:55,121 | INFO     | process IDs to be killed: [3196819] (in reverse order)
[2025-11-23 11:49:26] 2025-11-23 10:48:55,144 | WARNING  | found no corresponding commands to process id(s)
[2025-11-23 11:49:26] 2025-11-23 10:48:55,144 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-23 11:49:26] 2025-11-23 10:48:55,145 | INFO     | did not find any defunct processes belonging to 3196819
[2025-11-23 11:49:26] 2025-11-23 10:48:55,146 | INFO     | did not find any defunct processes belonging to 3196819
[2025-11-23 11:49:26] 2025-11-23 10:48:55,146 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-23 11:49:26] 2025-11-23 10:48:55,146 | INFO     | ready for new job
[2025-11-23 11:49:26] 2025-11-23 10:48:55,146 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-23 11:49:26] 2025-11-23 10:48:55,148 | INFO     | ***************************************
[2025-11-23 11:49:26] 2025-11-23 10:48:55,148 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-23 11:49:26] 2025-11-23 10:48:55,148 | INFO     | ***************************************
[2025-11-23 11:49:26] 2025-11-23 10:48:55,148 | INFO     | 
[2025-11-23 11:49:26] 2025-11-23 10:48:55,148 | INFO     | architecture information:
[2025-11-23 11:49:26] 2025-11-23 10:48:55,148 | INFO     | executing command: cat /etc/os-release
[2025-11-23 11:49:26] 2025-11-23 10:48:55,157 | INFO     | cat /etc/os-release:
[2025-11-23 11:49:26] NAME="CentOS Linux"
[2025-11-23 11:49:26] VERSION="7 (Core)"
[2025-11-23 11:49:26] ID="centos"
[2025-11-23 11:49:26] ID_LIKE="rhel fedora"
[2025-11-23 11:49:26] VERSION_ID="7"
[2025-11-23 11:49:26] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-23 11:49:26] ANSI_COLOR="0;31"
[2025-11-23 11:49:26] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-23 11:49:26] HOME_URL="https://www.centos.org/"
[2025-11-23 11:49:26] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-23 11:49:26] 
[2025-11-23 11:49:26] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-23 11:49:26] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-23 11:49:26] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-23 11:49:26] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-23 11:49:26] 
[2025-11-23 11:49:26] 2025-11-23 10:48:55,157 | INFO     | ***************************************
[2025-11-23 11:49:26] 2025-11-23 10:48:55,661 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-23 11:49:26] 2025-11-23 10:48:55,673 | INFO     | sufficient remaining disk space (486144999424 B)
[2025-11-23 11:49:26] 2025-11-23 10:48:55,674 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-23 11:49:26] 2025-11-23 10:48:55,674 | INFO     | current server update state: UPDATING_FINAL
[2025-11-23 11:49:26] 2025-11-23 10:48:55,674 | INFO     | update_server=False
[2025-11-23 11:49:26] 2025-11-23 10:48:55,674 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-23 11:49:26] 2025-11-23 10:48:55,674 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:49:26] 2025-11-23 10:48:55,878 | WARNING  | job monitor detected an abort_job request (signal=args.signal)
[2025-11-23 11:49:26] 2025-11-23 10:48:55,878 | WARNING  | cannot recover job monitoring - aborting pilot
[2025-11-23 11:49:26] 2025-11-23 10:48:55,878 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-23 11:49:26] 2025-11-23 10:48:55,878 | INFO     | will abort loop
[2025-11-23 11:49:26] 2025-11-23 10:48:56,183 | INFO     | all payload control threads have been joined
[2025-11-23 11:49:26] 2025-11-23 10:48:56,426 | INFO     | all data control threads have been joined
[2025-11-23 11:49:26] 2025-11-23 10:48:56,680 | INFO     | [job] queue monitor thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:56,680 | INFO     | [job] retrieve thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:56,712 | INFO     | [payload] validate_post thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:56,884 | INFO     | [job] job monitor thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:56,899 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-23 11:49:26] 2025-11-23 10:48:56,923 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-23 11:49:26] 2025-11-23 10:48:56,940 | INFO     | all job control threads have been joined
[2025-11-23 11:49:26] 2025-11-23 10:48:56,943 | INFO     | [data] copytool_in thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,189 | INFO     | [payload] control thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,342 | INFO     | [payload] execute_payloads thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,432 | INFO     | [data] control thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,557 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,730 | INFO     | [job] validate thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,759 | INFO     | [payload] failed_post thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,760 | INFO     | [job] create_data_payload thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,770 | INFO     | [payload] validate_pre thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:57,941 | INFO     | [job] control thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:48:58,906 | INFO     | [data] copytool_out thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:49:00,929 | INFO     | [data] queue_monitor thread has finished
[2025-11-23 11:49:26] 2025-11-23 10:49:05,880 | INFO     | [monitor] cgroup control has ended
[2025-11-23 11:49:26] 2025-11-23 10:49:05,887 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140592787220288)>', '<ExcThread(monitor, started 140592424134400)>']
[2025-11-23 11:49:26] 2025-11-23 10:49:10,913 | INFO     | all workflow threads have been joined
[2025-11-23 11:49:26] 2025-11-23 10:49:10,914 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-23 11:49:26] 2025-11-23 10:49:10,914 | INFO     | traces error code: 0
[2025-11-23 11:49:26] 2025-11-23 10:49:10,915 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-23 11:49:26] 2025-11-23 10:49:26,577 | INFO     | PID=3190347 has CPU usage=0.5% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-23 11:49:26] 2025-11-23 10:49:26,577 | INFO     | found 0 job(s) in 20 queues
[2025-11-23 11:49:26] 2025-11-23 10:49:26,577 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-23 11:49:26] 2025-11-23 10:49:26,577 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-23 11:49:26] 2025-11-23 10:49:26,577 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-23 11:49:26] 2025-11-23 10:49:26,577 | INFO     | [monitor] control thread has ended
[2025-11-23 11:49:26] 2025-11-23 10:49:26,617 [wrapper] ==== pilot stdout END ====
[2025-11-23 11:49:26] 2025-11-23 10:49:26,620 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-23 11:49:26] 2025-11-23 10:49:26,622 [wrapper] pilotpid: 3190347
[2025-11-23 11:49:26] 2025-11-23 10:49:26,624 [wrapper] Pilot exit status: 0
[2025-11-23 11:49:26] 2025-11-23 10:49:26,630 [wrapper] pandaids: 6891583861
[2025-11-23 11:49:26] 2025-11-23 10:49:26,642 [wrapper] cleanup supervisor_pilot 3276104 3190348
[2025-11-23 11:49:26] 2025-11-23 10:49:26,644 [wrapper] Test setup, not cleaning
[2025-11-23 11:49:26] 2025-11-23 10:49:26,646 [wrapper] apfmon messages muted
[2025-11-23 11:49:26] 2025-11-23 10:49:26,648 [wrapper] ==== wrapper stdout END ====
[2025-11-23 11:49:26] 2025-11-23 10:49:26,650 [wrapper] ==== wrapper stderr END ====
[2025-11-23 11:49:26]  *** Error codes and diagnostics ***
[2025-11-23 11:49:26]     "exeErrorCode": 0,
[2025-11-23 11:49:26]     "exeErrorDiag": "",
[2025-11-23 11:49:26]     "pilotErrorCode": 0,
[2025-11-23 11:49:26]     "pilotErrorDiag": "",
[2025-11-23 11:49:26]  *** Listing of results directory ***
[2025-11-23 11:49:26] total 1302296
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-23 11:49:26] -rwx------ 1 boinc boinc     36292 Nov 18 18:15 runpilot2-wrapper.sh
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:15 queuedata.json
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc       100 Nov 22 23:28 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-23 11:49:26] -rwxr-xr-x 1 boinc boinc      7986 Nov 22 23:28 run_atlas
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc       105 Nov 22 23:28 job.xml
[2025-11-23 11:49:26] -rw-r--r-- 2 boinc boinc 405891842 Nov 22 23:28 EVNT.47493065._000448.pool.root.1
[2025-11-23 11:49:26] drwxrwx--x 2 boinc boinc      4096 Nov 22 23:28 shared
[2025-11-23 11:49:26] -rw-r--r-- 2 boinc boinc    590097 Nov 22 23:28 input.tar.gz
[2025-11-23 11:49:26] -rw-r--r-- 2 boinc boinc     15120 Nov 22 23:28 start_atlas.sh
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc         0 Nov 22 23:28 boinc_setup_complete
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc      6206 Nov 22 23:28 init_data.xml
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc         0 Nov 22 23:28 boinc_lockfile
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc      2773 Nov 22 23:28 pandaJob.out
[2025-11-23 11:49:26] -rw------- 1 boinc boinc    989784 Nov 22 23:29 agis_schedconf.cvmfs.json
[2025-11-23 11:49:26] drwx------ 5 boinc boinc      4096 Nov 22 23:29 pilot3
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc       532 Nov 23 11:44 boinc_task_state.xml
[2025-11-23 11:49:26] -rw------- 1 boinc boinc 908865167 Nov 23 11:48 HITS.47493068._004475.pool.root.1
[2025-11-23 11:49:26] -rw------- 1 boinc boinc        95 Nov 23 11:48 pilot_heartbeat.json
[2025-11-23 11:49:26] -rw------- 1 boinc boinc      1028 Nov 23 11:48 memory_monitor_summary.json
[2025-11-23 11:49:26] -rw------- 1 boinc boinc   1526164 Nov 23 11:48 agis_ddmendpoints.agis.ALL.json
[2025-11-23 11:49:26] -rw------- 1 boinc boinc   1215132 Nov 23 11:48 log.47493068._004475.job.log.tgz.1
[2025-11-23 11:49:26] -rw------- 1 boinc boinc      8561 Nov 23 11:48 heartbeat.json
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc      8192 Nov 23 11:49 boinc_mmap_file
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc        28 Nov 23 11:49 wrapper_checkpoint.txt
[2025-11-23 11:49:26] -rw------- 1 boinc boinc       747 Nov 23 11:49 pilotlog.txt
[2025-11-23 11:49:26] -rw------- 1 boinc boinc   6226022 Nov 23 11:49 log.47493068._004475.job.log.1
[2025-11-23 11:49:26] -rw------- 1 boinc boinc       353 Nov 23 11:49 output.list
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc       620 Nov 23 11:49 runtime_log
[2025-11-23 11:49:26] -rw------- 1 boinc boinc   7464960 Nov 23 11:49 result.tar.gz
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc      8778 Nov 23 11:49 runtime_log.err
[2025-11-23 11:49:26] -rw------- 1 boinc boinc       665 Nov 23 11:49 ePRKDm8Tef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmZYFKDmla5yyn.diag
[2025-11-23 11:49:26] -rw-r--r-- 1 boinc boinc     11487 Nov 23 11:49 stderr.txt
[2025-11-23 11:49:26] HITS file was successfully produced:
[2025-11-23 11:49:26] -rw------- 1 boinc boinc 908865167 Nov 23 11:48 shared/HITS.pool.root.1
[2025-11-23 11:49:26]  *** Contents of shared directory: ***
[2025-11-23 11:49:26] total 1291840
[2025-11-23 11:49:26] -rw-r--r-- 2 boinc boinc 405891842 Nov 22 23:28 ATLAS.root_0
[2025-11-23 11:49:26] -rw-r--r-- 2 boinc boinc    590097 Nov 22 23:28 input.tar.gz
[2025-11-23 11:49:26] -rw-r--r-- 2 boinc boinc     15120 Nov 22 23:28 start_atlas.sh
[2025-11-23 11:49:26] -rw------- 1 boinc boinc 908865167 Nov 23 11:48 HITS.pool.root.1
[2025-11-23 11:49:26] -rw------- 1 boinc boinc   7464960 Nov 23 11:49 result.tar.gz
11:49:27 (3186617): run_atlas exited; CPU time 88042.688418
11:49:27 (3186617): called boinc_finish(0)

</stderr_txt>
]]>

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