Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:52:35 (3509635): wrapper (7.7.26015): starting
04:52:35 (3509635): wrapper: running run_atlas (--nthreads 2)
[2025-11-21 04:52:35] Arguments: --nthreads 2
[2025-11-21 04:52:35] Threads: 2
[2025-11-21 04:52:35] Checking for CVMFS
[2025-11-21 04:52:35] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 04:52:36] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 04:52:36] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 04:52:36] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 04:52:36] 2.9.2.0 3391840 777 49920 153106 3 81 32191790 36864000 0 130560 0 244945 99.980 13465 569 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 04:52:36] CVMFS is ok
[2025-11-21 04:52:36] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 04:52:36] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 04:52:36] Further information can be found at the LHC@home message board.
[2025-11-21 04:52:36] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 04:52:36] Checking for apptainer binary...
[2025-11-21 04:52:36] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 04:52:36] Running /usr/bin/apptainer --version
[2025-11-21 04:52:36] apptainer version 1.4.1-1.1
[2025-11-21 04:52:36] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 04:52:36] thA369
[2025-11-21 04:52:36] apptainer works
[2025-11-21 04:52:36] Set ATHENA_PROC_NUMBER=2
[2025-11-21 04:52:36] Set ATHENA_CORE_NUMBER=2
[2025-11-21 04:52:36] Starting ATLAS job with PandaID=6891601663
[2025-11-21 04:52:36] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 17:58:23]  *** The last 200 lines of the pilot log: ***
[2025-11-21 17:58:23] 2025-11-21 16:42:44,321 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 17:58:23] 2025-11-21 16:42:44,321 | INFO     | ready for new job
[2025-11-21 17:58:23] 2025-11-21 16:42:44,321 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 17:58:23] 2025-11-21 16:42:44,322 | INFO     | ***************************************
[2025-11-21 17:58:23] 2025-11-21 16:42:44,323 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 17:58:23] 2025-11-21 16:42:44,323 | INFO     | ***************************************
[2025-11-21 17:58:23] 2025-11-21 16:42:44,323 | INFO     | 
[2025-11-21 17:58:23] 2025-11-21 16:42:44,323 | INFO     | architecture information:
[2025-11-21 17:58:23] 2025-11-21 16:42:44,323 | INFO     | executing command: cat /etc/os-release
[2025-11-21 17:58:23] 2025-11-21 16:42:44,331 | INFO     | cat /etc/os-release:
[2025-11-21 17:58:23] NAME="CentOS Linux"
[2025-11-21 17:58:23] VERSION="7 (Core)"
[2025-11-21 17:58:23] ID="centos"
[2025-11-21 17:58:23] ID_LIKE="rhel fedora"
[2025-11-21 17:58:23] VERSION_ID="7"
[2025-11-21 17:58:23] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 17:58:23] ANSI_COLOR="0;31"
[2025-11-21 17:58:23] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 17:58:23] HOME_URL="https://www.centos.org/"
[2025-11-21 17:58:23] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 17:58:23] 
[2025-11-21 17:58:23] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 17:58:23] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 17:58:23] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 17:58:23] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 17:58:23] 
[2025-11-21 17:58:23] 2025-11-21 16:42:44,331 | INFO     | ***************************************
[2025-11-21 17:58:23] 2025-11-21 16:42:44,834 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 17:58:23] 2025-11-21 16:42:44,843 | INFO     | sufficient remaining disk space (325682462720 B)
[2025-11-21 17:58:23] 2025-11-21 16:42:44,843 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 17:58:23] 2025-11-21 16:42:44,843 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 17:58:23] 2025-11-21 16:42:44,844 | INFO     | update_server=False
[2025-11-21 17:58:23] 2025-11-21 16:42:44,844 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 17:58:23] 2025-11-21 16:42:44,844 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:58:23] 2025-11-21 16:42:44,844 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 17:58:23] 2025-11-21 16:42:44,844 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 17:58:23] 2025-11-21 16:42:44,844 | INFO     | aborting loop
[2025-11-21 17:58:23] 2025-11-21 16:42:44,968 | INFO     | all payload control threads have been joined
[2025-11-21 17:58:23] 2025-11-21 16:42:45,012 | INFO     | all job control threads have been joined
[2025-11-21 17:58:23] 2025-11-21 16:42:45,235 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 17:58:23] 2025-11-21 16:42:45,510 | INFO     | all data control threads have been joined
[2025-11-21 17:58:23] 2025-11-21 16:42:45,848 | INFO     | [job] queue monitor thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:45,848 | INFO     | [job] retrieve thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:45,849 | INFO     | [job] job monitor thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:45,962 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:45,973 | INFO     | [payload] control thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,017 | INFO     | [job] control thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,198 | INFO     | [payload] validate_post thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,349 | INFO     | [data] copytool_in thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,506 | INFO     | [job] validate thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,511 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,515 | INFO     | [data] control thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,595 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:46,894 | INFO     | [payload] failed_post thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:47,065 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:47,240 | INFO     | [data] copytool_out thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:48,849 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 17:58:23] 2025-11-21 16:42:59,662 | INFO     | [monitor] cgroup control has ended
[2025-11-21 17:58:23] 2025-11-21 16:43:00,142 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140532613752640)>', '<ExcThread(monitor, started 140531531249408)>']
[2025-11-21 17:58:23] 2025-11-21 16:43:05,151 | INFO     | all workflow threads have been joined
[2025-11-21 17:58:23] 2025-11-21 16:43:05,151 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 17:58:23] 2025-11-21 16:43:05,151 | INFO     | traces error code: 0
[2025-11-21 17:58:23] 2025-11-21 16:43:05,151 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 17:58:23] 2025-11-21 16:43:15,072 | INFO     | PID=3513351 has CPU usage=2.1% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 17:58:23] 2025-11-21 16:43:15,073 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 17:58:23] 2025-11-21 16:43:15,073 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 17:58:23] 2025-11-21 16:43:15,073 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 17:58:23] 2025-11-21 16:43:15,073 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 17:58:23] 2025-11-21 16:43:15,073 | INFO     | [monitor] control thread has ended
[2025-11-21 17:58:23] 2025-11-21 16:43:15,116 [wrapper] ==== pilot stdout END ====
[2025-11-21 17:58:23] 2025-11-21 16:43:15,119 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 17:58:23] 2025-11-21 16:43:15,121 [wrapper] pilotpid: 3513351
[2025-11-21 17:58:23] 2025-11-21 16:43:15,123 [wrapper] Pilot exit status: 0
[2025-11-21 17:58:23] 2025-11-21 16:43:15,128 [wrapper] pandaids: 6891601663
[2025-11-21 17:58:23] 2025-11-21 16:43:15,143 [wrapper] cleanup supervisor_pilot 3644848 3513352
[2025-11-21 17:58:23] 2025-11-21 16:43:15,145 [wrapper] Test setup, not cleaning
[2025-11-21 17:58:23] 2025-11-21 16:43:15,147 [wrapper] apfmon messages muted
[2025-11-21 17:58:23] 2025-11-21 16:43:15,149 [wrapper] ==== wrapper stdout END ====
[2025-11-21 17:58:23] 2025-11-21 16:43:15,151 [wrapper] ==== wrapper stderr END ====
[2025-11-21 17:58:23]  *** Error codes and diagnostics ***
[2025-11-21 17:58:23]     "exeErrorCode": 0,
[2025-11-21 17:58:23]     "exeErrorDiag": "",
[2025-11-21 17:58:23]     "pilotErrorCode": 0,
[2025-11-21 17:58:23]     "pilotErrorDiag": "",
[2025-11-21 17:58:23]  *** Listing of results directory ***
[2025-11-21 17:58:23] total 1306932
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:50 pilot3.tar.gz
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc      5112 Nov 18 20:15 queuedata.json
[2025-11-21 17:58:23] -rwx------ 1 boinc boinc     36292 Nov 18 20:17 runpilot2-wrapper.sh
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc       100 Nov 21 04:52 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 17:58:23] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 04:52 run_atlas
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc       105 Nov 21 04:52 job.xml
[2025-11-21 17:58:23] -rw-r--r-- 2 boinc boinc 411759489 Nov 21 04:52 EVNT.47493065._000842.pool.root.1
[2025-11-21 17:58:23] drwxrwx--x 2 boinc boinc      4096 Nov 21 04:52 shared
[2025-11-21 17:58:23] -rw-r--r-- 2 boinc boinc    590099 Nov 21 04:52 input.tar.gz
[2025-11-21 17:58:23] -rw-r--r-- 2 boinc boinc     15120 Nov 21 04:52 start_atlas.sh
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc         0 Nov 21 04:52 boinc_setup_complete
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc      6205 Nov 21 04:52 init_data.xml
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc         0 Nov 21 04:52 boinc_lockfile
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc      2773 Nov 21 04:52 pandaJob.out
[2025-11-21 17:58:23] -rw------- 1 boinc boinc    989817 Nov 21 04:52 agis_schedconf.cvmfs.json
[2025-11-21 17:58:23] drwx------ 5 boinc boinc      4096 Nov 21 04:52 pilot3
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc       531 Nov 21 17:38 boinc_task_state.xml
[2025-11-21 17:58:23] -rw------- 1 boinc boinc 907200704 Nov 21 17:42 HITS.47493068._007067.pool.root.1
[2025-11-21 17:58:23] -rw------- 1 boinc boinc      1024 Nov 21 17:42 memory_monitor_summary.json
[2025-11-21 17:58:23] -rw------- 1 boinc boinc   1526164 Nov 21 17:42 agis_ddmendpoints.agis.ALL.json
[2025-11-21 17:58:23] -rw------- 1 boinc boinc   1252230 Nov 21 17:42 log.47493068._007067.job.log.tgz.1
[2025-11-21 17:58:23] -rw------- 1 boinc boinc      8560 Nov 21 17:42 heartbeat.json
[2025-11-21 17:58:23] -rw------- 1 boinc boinc       747 Nov 21 17:43 pilotlog.txt
[2025-11-21 17:58:23] -rw------- 1 boinc boinc        95 Nov 21 17:43 pilot_heartbeat.json
[2025-11-21 17:58:23] -rw------- 1 boinc boinc   6464443 Nov 21 17:43 log.47493068._007067.job.log.1
[2025-11-21 17:58:23] -rw------- 1 boinc boinc       353 Nov 21 17:43 output.list
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc       620 Nov 21 17:43 runtime_log
[2025-11-21 17:58:23] -rw------- 1 boinc boinc   7731200 Nov 21 17:43 result.tar.gz
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc      8778 Nov 21 17:43 runtime_log.err
[2025-11-21 17:58:23] -rw------- 1 boinc boinc       666 Nov 21 17:43 GdQNDmdNgf8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmsQGKDmdVQugn.diag
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc      8192 Nov 21 17:58 boinc_mmap_file
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc      9745 Nov 21 17:58 stderr.txt
[2025-11-21 17:58:23] -rw-r--r-- 1 boinc boinc        28 Nov 21 17:58 wrapper_checkpoint.txt
[2025-11-21 17:58:23] HITS file was successfully produced:
[2025-11-21 17:58:23] -rw------- 1 boinc boinc 907200704 Nov 21 17:42 shared/HITS.pool.root.1
[2025-11-21 17:58:23]  *** Contents of shared directory: ***
[2025-11-21 17:58:23] total 1296208
[2025-11-21 17:58:23] -rw-r--r-- 2 boinc boinc 411759489 Nov 21 04:52 ATLAS.root_0
[2025-11-21 17:58:23] -rw-r--r-- 2 boinc boinc    590099 Nov 21 04:52 input.tar.gz
[2025-11-21 17:58:23] -rw-r--r-- 2 boinc boinc     15120 Nov 21 04:52 start_atlas.sh
[2025-11-21 17:58:23] -rw------- 1 boinc boinc 907200704 Nov 21 17:42 HITS.pool.root.1
[2025-11-21 17:58:23] -rw------- 1 boinc boinc   7731200 Nov 21 17:43 result.tar.gz
17:58:25 (3509635): run_atlas exited; CPU time 91757.752198
17:58:25 (3509635): called boinc_finish(0)

</stderr_txt>
]]>

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