Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
11:23:41 (23186): wrapper (7.7.26015): starting
11:23:41 (23186): wrapper: running run_atlas (--nthreads 4)
[2025-11-21 11:23:41] Arguments: --nthreads 4
[2025-11-21 11:23:41] Threads: 4
[2025-11-21 11:23:41] Checking for CVMFS
[2025-11-21 11:23:42] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 11:23:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 11:23:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 11:23:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 11:23:42] 2.9.2.0 3120 5 47632 153121 2 88 26611097 36864001 0 130560 0 59323 99.963 2944 8087 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 11:23:42] CVMFS is ok
[2025-11-21 11:23:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 11:23:42] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 11:23:42] Further information can be found at the LHC@home message board.
[2025-11-21 11:23:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 11:23:42] Checking for apptainer binary...
[2025-11-21 11:23:42] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 11:23:42] Running /usr/bin/apptainer --version
[2025-11-21 11:23:42] apptainer version 1.4.1-1.1
[2025-11-21 11:23:42] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 11:23:42] thA373a
[2025-11-21 11:23:42] apptainer works
[2025-11-21 11:23:42] Set ATHENA_PROC_NUMBER=4
[2025-11-21 11:23:42] Set ATHENA_CORE_NUMBER=4
[2025-11-21 11:23:42] Starting ATLAS job with PandaID=6891586492
[2025-11-21 11:23:42] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 18:17:50]  *** The last 200 lines of the pilot log: ***
[2025-11-21 18:17:50] 2025-11-21 17:17:20,296 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:17:50] 2025-11-21 17:17:20,296 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 18:17:50] 2025-11-21 17:17:20,296 | INFO     | aborting loop
[2025-11-21 18:17:50] 2025-11-21 17:17:20,788 | INFO     | all job control threads have been joined
[2025-11-21 18:17:50] 2025-11-21 17:17:20,904 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 18:17:50] 2025-11-21 17:17:21,037 | INFO     | all data control threads have been joined
[2025-11-21 18:17:50] 2025-11-21 17:17:21,301 | INFO     | [job] retrieve thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,302 | INFO     | [job] queue monitor thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,302 | INFO     | [job] job monitor thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,484 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,643 | INFO     | all payload control threads have been joined
[2025-11-21 18:17:50] 2025-11-21 17:17:21,671 | INFO     | [monitor] cgroup control has ended
[2025-11-21 18:17:50] 2025-11-21 17:17:21,777 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 18:17:50] 2025-11-21 17:17:21,791 | INFO     | [job] control thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,865 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,868 | INFO     | [job] validate thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,876 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,876 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:21,976 | INFO     | [payload] failed_post thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:22,042 | INFO     | [data] control thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:22,357 | INFO     | [payload] validate_post thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:22,474 | INFO     | [data] copytool_in thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:22,645 | INFO     | [payload] control thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:22,911 | INFO     | [data] copytool_out thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:25,784 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 18:17:50] 2025-11-21 17:17:26,156 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140554746828608)>', '<ExcThread(monitor, started 140553677174528)>']
[2025-11-21 18:17:50] 2025-11-21 17:17:31,182 | INFO     | all workflow threads have been joined
[2025-11-21 18:17:50] 2025-11-21 17:17:31,182 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 18:17:50] 2025-11-21 17:17:31,191 | INFO     | traces error code: 0
[2025-11-21 18:17:50] 2025-11-21 17:17:31,192 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 18:17:50] 2025-11-21 17:17:50,132 | INFO     | PID=26983 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-21 18:17:50] 2025-11-21 17:17:50,132 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 18:17:50] 2025-11-21 17:17:50,132 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 18:17:50] 2025-11-21 17:17:50,132 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 18:17:50] 2025-11-21 17:17:50,132 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 18:17:50] 2025-11-21 17:17:50,132 | CRITICAL | thread 'MainThread' is not alive
[2025-11-21 18:17:50] 2025-11-21 17:17:50,132 | INFO     | [monitor] control thread has ended
[2025-11-21 18:17:50] 2025-11-21 17:17:50,245 [wrapper] ==== pilot stdout END ====
[2025-11-21 18:17:50] 2025-11-21 17:17:50,249 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 18:17:50] 2025-11-21 17:17:50,254 [wrapper] pilotpid: 26983
[2025-11-21 18:17:50] 2025-11-21 17:17:50,258 [wrapper] Pilot exit status: 0
[2025-11-21 18:17:50] 2025-11-21 17:17:50,271 [wrapper] pandaids: 6891586492
[2025-11-21 18:17:50] 2025-11-21 17:17:50,295 [wrapper] cleanup supervisor_pilot   87411 26984
[2025-11-21 18:17:50] 2025-11-21 17:17:50,299 [wrapper] Test setup, not cleaning
[2025-11-21 18:17:50] 2025-11-21 17:17:50,304 [wrapper] apfmon messages muted
[2025-11-21 18:17:50] 2025-11-21 17:17:50,307 [wrapper] ==== wrapper stdout END ====
[2025-11-21 18:17:50] 2025-11-21 17:17:50,311 [wrapper] ==== wrapper stderr END ====
[2025-11-21 18:17:50]  *** Error codes and diagnostics ***
[2025-11-21 18:17:50]     "exeErrorCode": 65,
[2025-11-21 18:17:50]     "exeErrorDiag": "Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 241; Run: 284500; Evt: 123543000; Current algorithm: ISF_Kernel_FullG4; Current Function: unknown\"",
[2025-11-21 18:17:50]     "pilotErrorCode": 1305,
[2025-11-21 18:17:50]     "pilotErrorDiag": "Failed to execute payload:PyJobTransforms.transform.execute  CRITICAL Transform executor raised TransformValidationException: Non-zero return code from EVNTtoHITS (65); Logfile error in log.EVNTtoHITS: \"Segmentation fault: Event counter: 241; Run: 284500; Evt: 123543000; Current algor",
[2025-11-21 18:17:50]  *** Listing of results directory ***
[2025-11-21 18:17:50] total 414624
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc    576529 Nov 18 18:24 pilot3.tar.gz
[2025-11-21 18:17:50] -rwx------ 1 boinc boinc     36292 Nov 18 18:31 runpilot2-wrapper.sh
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:31 queuedata.json
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc       100 Nov 21 11:23 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 18:17:50] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 11:23 run_atlas
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc       105 Nov 21 11:23 job.xml
[2025-11-21 18:17:50] -rw-r--r-- 2 boinc boinc 411341885 Nov 21 11:23 EVNT.47493065._000492.pool.root.1
[2025-11-21 18:17:50] -rw-r--r-- 2 boinc boinc    590097 Nov 21 11:23 input.tar.gz
[2025-11-21 18:17:50] -rw-r--r-- 2 boinc boinc     15120 Nov 21 11:23 start_atlas.sh
[2025-11-21 18:17:50] drwxrwx--x 2 boinc boinc      4096 Nov 21 11:23 shared
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc         0 Nov 21 11:23 boinc_setup_complete
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc         0 Nov 21 11:23 boinc_lockfile
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc      2773 Nov 21 11:23 pandaJob.out
[2025-11-21 18:17:50] -rw------- 1 boinc boinc    989817 Nov 21 11:23 agis_schedconf.cvmfs.json
[2025-11-21 18:17:50] drwx------ 5 boinc boinc      4096 Nov 21 11:23 pilot3
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc      6384 Nov 21 12:24 init_data.xml
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc       531 Nov 21 18:12 boinc_task_state.xml
[2025-11-21 18:17:50] -rw------- 1 boinc boinc      1053 Nov 21 18:15 memory_monitor_summary.json
[2025-11-21 18:17:50] -rw------- 1 boinc boinc   1179898 Nov 21 18:15 log.47493068._004913.job.log.tgz.1
[2025-11-21 18:17:50] -rw------- 1 boinc boinc   1526164 Nov 21 18:15 agis_ddmendpoints.agis.ALL.json
[2025-11-21 18:17:50] -rw------- 1 boinc boinc        95 Nov 21 18:17 pilot_heartbeat.json
[2025-11-21 18:17:50] -rw------- 1 boinc boinc      9742 Nov 21 18:17 heartbeat.json
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc        28 Nov 21 18:17 wrapper_checkpoint.txt
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc      8192 Nov 21 18:17 boinc_mmap_file
[2025-11-21 18:17:50] -rw------- 1 boinc boinc       815 Nov 21 18:17 pilotlog.txt
[2025-11-21 18:17:50] -rw------- 1 boinc boinc   3485304 Nov 21 18:17 log.47493068._004913.job.log.1
[2025-11-21 18:17:50] -rw------- 1 boinc boinc       186 Nov 21 18:17 output.list
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc       620 Nov 21 18:17 runtime_log
[2025-11-21 18:17:50] -rw------- 1 boinc boinc   4689920 Nov 21 18:17 result.tar.gz
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc      8631 Nov 21 18:17 runtime_log.err
[2025-11-21 18:17:50] -rw------- 1 boinc boinc       672 Nov 21 18:17 MOCMDm5ief8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmUaFKDmI9uP0n.diag
[2025-11-21 18:17:50] -rw-r--r-- 1 boinc boinc      7772 Nov 21 18:17 stderr.txt
[2025-11-21 18:17:50] No HITS result produced
[2025-11-21 18:17:50]  *** Contents of shared directory: ***
[2025-11-21 18:17:50] total 406884
[2025-11-21 18:17:50] -rw-r--r-- 2 boinc boinc 411341885 Nov 21 11:23 ATLAS.root_0
[2025-11-21 18:17:50] -rw-r--r-- 2 boinc boinc    590097 Nov 21 11:23 input.tar.gz
[2025-11-21 18:17:50] -rw-r--r-- 2 boinc boinc     15120 Nov 21 11:23 start_atlas.sh
[2025-11-21 18:17:50] -rw------- 1 boinc boinc   4689920 Nov 21 18:17 result.tar.gz
18:17:52 (23186): run_atlas exited; CPU time 96957.692119
18:17:52 (23186): called boinc_finish(0)

</stderr_txt>
]]>

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