Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:03:59 (32220): wrapper (7.7.26015): starting
04:03:59 (32220): wrapper: running run_atlas (--nthreads 3)
[2025-11-20 04:03:59] Arguments: --nthreads 3
[2025-11-20 04:03:59] Threads: 3
[2025-11-20 04:03:59] Checking for CVMFS
[2025-11-20 04:03:59] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 04:03:59] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 04:03:59] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 04:03:59] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 04:03:59] 2.9.2.0 3958803 1960 74872 153065 3 81 32592715 36864001 0 130560 0 729632 99.702 259690 8864 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-20 04:03:59] CVMFS is ok
[2025-11-20 04:04:00] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 04:04:00] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 04:04:00] Further information can be found at the LHC@home message board.
[2025-11-20 04:04:00] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 04:04:00] Checking for apptainer binary...
[2025-11-20 04:04:00] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 04:04:00] Running /usr/bin/apptainer --version
[2025-11-20 04:04:00] apptainer version 1.4.1-1.1
[2025-11-20 04:04:00] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 04:04:00] atlasA223b
[2025-11-20 04:04:00] apptainer works
[2025-11-20 04:04:00] Set ATHENA_PROC_NUMBER=3
[2025-11-20 04:04:00] Set ATHENA_CORE_NUMBER=3
[2025-11-20 04:04:00] Starting ATLAS job with PandaID=6891584413
[2025-11-20 04:04:00] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 12:15:56]  *** The last 200 lines of the pilot log: ***
[2025-11-20 12:15:56] 2025-11-20 11:15:26,212 | INFO     | zombie collector waiting for pid 42393
[2025-11-20 12:15:56] 2025-11-20 11:15:26,212 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 12:15:56] 2025-11-20 11:15:26,212 | INFO     | collected zombie processes
[2025-11-20 12:15:56] 2025-11-20 11:15:26,212 | INFO     | will attempt to kill all subprocesses of pid=42393
[2025-11-20 12:15:56] 2025-11-20 11:15:26,269 | INFO     | process IDs to be killed: [42393] (in reverse order)
[2025-11-20 12:15:56] 2025-11-20 11:15:26,299 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 12:15:56] 2025-11-20 11:15:26,299 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 12:15:56] 2025-11-20 11:15:26,301 | INFO     | did not find any defunct processes belonging to 42393
[2025-11-20 12:15:56] 2025-11-20 11:15:26,302 | INFO     | did not find any defunct processes belonging to 42393
[2025-11-20 12:15:56] 2025-11-20 11:15:26,303 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 12:15:56] 2025-11-20 11:15:26,303 | INFO     | ready for new job
[2025-11-20 12:15:56] 2025-11-20 11:15:26,303 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 12:15:56] 2025-11-20 11:15:26,304 | INFO     | ***************************************
[2025-11-20 12:15:56] 2025-11-20 11:15:26,304 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 12:15:56] 2025-11-20 11:15:26,304 | INFO     | ***************************************
[2025-11-20 12:15:56] 2025-11-20 11:15:26,304 | INFO     | 
[2025-11-20 12:15:56] 2025-11-20 11:15:26,304 | INFO     | architecture information:
[2025-11-20 12:15:56] 2025-11-20 11:15:26,305 | INFO     | executing command: cat /etc/os-release
[2025-11-20 12:15:56] 2025-11-20 11:15:26,314 | INFO     | cat /etc/os-release:
[2025-11-20 12:15:56] NAME="CentOS Linux"
[2025-11-20 12:15:56] VERSION="7 (Core)"
[2025-11-20 12:15:56] ID="centos"
[2025-11-20 12:15:56] ID_LIKE="rhel fedora"
[2025-11-20 12:15:56] VERSION_ID="7"
[2025-11-20 12:15:56] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 12:15:56] ANSI_COLOR="0;31"
[2025-11-20 12:15:56] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 12:15:56] HOME_URL="https://www.centos.org/"
[2025-11-20 12:15:56] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 12:15:56] 
[2025-11-20 12:15:56] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 12:15:56] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 12:15:56] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 12:15:56] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 12:15:56] 
[2025-11-20 12:15:56] 2025-11-20 11:15:26,314 | INFO     | ***************************************
[2025-11-20 12:15:56] 2025-11-20 11:15:26,817 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-20 12:15:56] 2025-11-20 11:15:26,831 | INFO     | sufficient remaining disk space (369728946176 B)
[2025-11-20 12:15:56] 2025-11-20 11:15:26,831 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 12:15:56] 2025-11-20 11:15:26,831 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 12:15:56] 2025-11-20 11:15:26,831 | INFO     | update_server=False
[2025-11-20 12:15:56] 2025-11-20 11:15:26,831 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 12:15:56] 2025-11-20 11:15:26,832 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:15:56] 2025-11-20 11:15:26,832 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:15:56] 2025-11-20 11:15:26,832 | INFO     | aborting loop
[2025-11-20 12:15:56] 2025-11-20 11:15:26,832 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 12:15:56] 2025-11-20 11:15:26,832 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 12:15:56] 2025-11-20 11:15:27,253 | INFO     | all payload control threads have been joined
[2025-11-20 12:15:56] 2025-11-20 11:15:27,399 | INFO     | all data control threads have been joined
[2025-11-20 12:15:56] 2025-11-20 11:15:27,834 | INFO     | [job] job monitor thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:27,837 | INFO     | [job] retrieve thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:27,837 | INFO     | [job] queue monitor thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,200 | INFO     | [payload] failed_post thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,209 | INFO     | [data] copytool_in thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,210 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,259 | INFO     | [payload] control thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,272 | INFO     | all job control threads have been joined
[2025-11-20 12:15:56] 2025-11-20 11:15:28,347 | INFO     | [job] validate thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,405 | INFO     | [data] control thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,573 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,713 | INFO     | [payload] validate_post thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:28,838 | INFO     | [data] copytool_out thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:29,145 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:29,239 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:29,277 | INFO     | [job] control thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:30,839 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 12:15:56] 2025-11-20 11:15:39,486 | INFO     | [monitor] cgroup control has ended
[2025-11-20 12:15:56] 2025-11-20 11:15:41,110 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140346161092416)>', '<ExcThread(monitor, started 140345673234176)>']
[2025-11-20 12:15:56] 2025-11-20 11:15:46,136 | INFO     | all workflow threads have been joined
[2025-11-20 12:15:56] 2025-11-20 11:15:46,137 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 12:15:56] 2025-11-20 11:15:46,137 | INFO     | traces error code: 0
[2025-11-20 12:15:56] 2025-11-20 11:15:46,137 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 12:15:56] 2025-11-20 11:15:56,709 | INFO     | PID=35940 has CPU usage=0.8% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR 
[2025-11-20 12:15:56] 2025-11-20 11:15:56,709 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 12:15:56] 2025-11-20 11:15:56,710 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 12:15:56] 2025-11-20 11:15:56,710 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 12:15:56] 2025-11-20 11:15:56,710 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 12:15:56] 2025-11-20 11:15:56,710 | INFO     | [monitor] control thread has ended
[2025-11-20 12:15:56] 2025-11-20 11:15:56,757 [wrapper] ==== pilot stdout END ====
[2025-11-20 12:15:56] 2025-11-20 11:15:56,760 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 12:15:56] 2025-11-20 11:15:56,762 [wrapper] pilotpid: 35940
[2025-11-20 12:15:56] 2025-11-20 11:15:56,765 [wrapper] Pilot exit status: 0
[2025-11-20 12:15:56] 2025-11-20 11:15:56,773 [wrapper] pandaids: 6891584413
[2025-11-20 12:15:56] 2025-11-20 11:15:56,792 [wrapper] cleanup supervisor_pilot   94980 35941
[2025-11-20 12:15:56] 2025-11-20 11:15:56,795 [wrapper] Test setup, not cleaning
[2025-11-20 12:15:56] 2025-11-20 11:15:56,798 [wrapper] apfmon messages muted
[2025-11-20 12:15:56] 2025-11-20 11:15:56,800 [wrapper] ==== wrapper stdout END ====
[2025-11-20 12:15:56] 2025-11-20 11:15:56,803 [wrapper] ==== wrapper stderr END ====
[2025-11-20 12:15:56]  *** Error codes and diagnostics ***
[2025-11-20 12:15:56]     "exeErrorCode": 0,
[2025-11-20 12:15:56]     "exeErrorDiag": "",
[2025-11-20 12:15:56]     "pilotErrorCode": 0,
[2025-11-20 12:15:56]     "pilotErrorDiag": "",
[2025-11-20 12:15:56]  *** Listing of results directory ***
[2025-11-20 12:15:56] total 1319772
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc    576529 Nov 18 17:45 pilot3.tar.gz
[2025-11-20 12:15:56] -rwx------ 1 boinc boinc     36292 Nov 18 18:13 runpilot2-wrapper.sh
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc      5112 Nov 18 18:13 queuedata.json
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc       100 Nov 20 04:03 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 12:15:56] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 04:03 run_atlas
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc       105 Nov 20 04:03 job.xml
[2025-11-20 12:15:56] -rw-r--r-- 2 boinc boinc 411181472 Nov 20 04:03 EVNT.47493065._000458.pool.root.1
[2025-11-20 12:15:56] -rw-r--r-- 2 boinc boinc    590099 Nov 20 04:03 input.tar.gz
[2025-11-20 12:15:56] -rw-r--r-- 2 boinc boinc     15120 Nov 20 04:03 start_atlas.sh
[2025-11-20 12:15:56] drwxrwx--x 2 boinc boinc      4096 Nov 20 04:03 shared
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc         0 Nov 20 04:03 boinc_setup_complete
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc      6448 Nov 20 04:03 init_data.xml
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc         0 Nov 20 04:03 boinc_lockfile
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc      2770 Nov 20 04:04 pandaJob.out
[2025-11-20 12:15:56] -rw------- 1 boinc boinc    989435 Nov 20 04:04 agis_schedconf.cvmfs.json
[2025-11-20 12:15:56] drwx------ 5 boinc boinc      4096 Nov 20 04:04 pilot3
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc       531 Nov 20 12:10 boinc_task_state.xml
[2025-11-20 12:15:56] -rw------- 1 boinc boinc        95 Nov 20 12:14 pilot_heartbeat.json
[2025-11-20 12:15:56] -rw------- 1 boinc boinc 925723232 Nov 20 12:15 HITS.47493068._004571.pool.root.1
[2025-11-20 12:15:56] -rw------- 1 boinc boinc      1020 Nov 20 12:15 memory_monitor_summary.json
[2025-11-20 12:15:56] -rw------- 1 boinc boinc   1525063 Nov 20 12:15 agis_ddmendpoints.agis.ALL.json
[2025-11-20 12:15:56] -rw------- 1 boinc boinc   1177464 Nov 20 12:15 log.47493068._004571.job.log.tgz.1
[2025-11-20 12:15:56] -rw------- 1 boinc boinc      8564 Nov 20 12:15 heartbeat.json
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc        28 Nov 20 12:15 wrapper_checkpoint.txt
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc      8192 Nov 20 12:15 boinc_mmap_file
[2025-11-20 12:15:56] -rw------- 1 boinc boinc       745 Nov 20 12:15 pilotlog.txt
[2025-11-20 12:15:56] -rw------- 1 boinc boinc   4137234 Nov 20 12:15 log.47493068._004571.job.log.1
[2025-11-20 12:15:56] -rw------- 1 boinc boinc       353 Nov 20 12:15 output.list
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc       620 Nov 20 12:15 runtime_log
[2025-11-20 12:15:56] -rw------- 1 boinc boinc   5335040 Nov 20 12:15 result.tar.gz
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc      8798 Nov 20 12:15 runtime_log.err
[2025-11-20 12:15:56] -rw------- 1 boinc boinc       669 Nov 20 12:15 DxoMDmASef8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmKYFKDm3If5Hn.diag
[2025-11-20 12:15:56] -rw-r--r-- 1 boinc boinc     10723 Nov 20 12:15 stderr.txt
[2025-11-20 12:15:56] HITS file was successfully produced:
[2025-11-20 12:15:56] -rw------- 1 boinc boinc 925723232 Nov 20 12:15 shared/HITS.pool.root.1
[2025-11-20 12:15:56]  *** Contents of shared directory: ***
[2025-11-20 12:15:56] total 1311392
[2025-11-20 12:15:56] -rw-r--r-- 2 boinc boinc 411181472 Nov 20 04:03 ATLAS.root_0
[2025-11-20 12:15:56] -rw-r--r-- 2 boinc boinc    590099 Nov 20 04:03 input.tar.gz
[2025-11-20 12:15:56] -rw-r--r-- 2 boinc boinc     15120 Nov 20 04:03 start_atlas.sh
[2025-11-20 12:15:56] -rw------- 1 boinc boinc 925723232 Nov 20 12:15 HITS.pool.root.1
[2025-11-20 12:15:56] -rw------- 1 boinc boinc   5335040 Nov 20 12:15 result.tar.gz
12:15:57 (32220): run_atlas exited; CPU time 87050.412971
12:15:57 (32220): called boinc_finish(0)

</stderr_txt>
]]>

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