Stderr output

<core_client_version>8.2.4</core_client_version>
<![CDATA[
<stderr_txt>
2025-11-20 15:34:25 (7100): vboxwrapper version 26210
2025-11-20 15:34:25 (7100): BOINC client version: 8.2.4
2025-11-20 15:34:26 (7100): Detected: VirtualBox VboxManage Interface (Version: 6.1.50)
2025-11-20 15:34:26 (7100): Successfully copied 'init_data.xml' to the shared directory.
2025-11-20 15:34:26 (7100): Create VM. (boinc_a3eb0b654d3296e4, slot#0)
2025-11-20 15:34:27 (7100): Setting Memory Size for VM. (4800MB)
2025-11-20 15:34:27 (7100): Setting CPU Count for VM. (8)
2025-11-20 15:34:27 (7100): Setting Chipset Options for VM.
2025-11-20 15:34:27 (7100): Setting Graphics Controller Options for VM. (Driver: VBoxVGA, 16MB)
2025-11-20 15:34:28 (7100): Setting Boot Options for VM.
2025-11-20 15:34:28 (7100): Setting Network Configuration for NAT. (Driver: virtio)
2025-11-20 15:34:28 (7100): Enabling VM Network Access.
2025-11-20 15:34:29 (7100): Disabling USB Support for VM.
2025-11-20 15:34:29 (7100): Disabling COM Port Support for VM.
2025-11-20 15:34:29 (7100): Disabling LPT Port Support for VM.
2025-11-20 15:34:29 (7100): Disabling Audio Support for VM.
2025-11-20 15:34:30 (7100): Disabling Clipboard Support for VM.
2025-11-20 15:34:30 (7100): Disabling Drag and Drop Support for VM.
2025-11-20 15:34:30 (7100): Adding storage controller(s) to VM.
2025-11-20 15:34:30 (7100): Adding virtual disk drive to VM. (ATLAS_vbox_3.03_image.vdi)
2025-11-20 15:34:31 (7100): Adding VirtualBox Guest Additions to VM.
2025-11-20 15:34:31 (7100): Adding network bandwidth throttle group to VM. (Defaulting to 1024GB)
2025-11-20 15:34:31 (7100): forwarding host port 49724 to guest port 80
2025-11-20 15:34:32 (7100): Enabling remote desktop for VM.
2025-11-20 15:34:32 (7100): Required extension pack not installed, remote desktop not enabled.
2025-11-20 15:34:32 (7100): Enabling shared directory for VM.
2025-11-20 15:34:33 (7100): Starting VM using VBoxManage interface. (boinc_a3eb0b654d3296e4, slot#0)
2025-11-20 15:34:36 (7100): Successfully started VM. (PID = '7148')
2025-11-20 15:34:36 (7100): Reporting VM Process ID to BOINC.
2025-11-20 15:34:36 (7100): Guest Log: BIOS: VirtualBox 6.1.50
2025-11-20 15:34:36 (7100): Guest Log: CPUID EDX: 0x178bfbff
2025-11-20 15:34:36 (7100): Guest Log: BIOS: No PCI IDE controller, not probing IDE
2025-11-20 15:34:36 (7100): Guest Log: BIOS: AHCI 0-P#0: PCHS=16383/16/63 LCHS=1024/255/63 0x0000000002800000 sectors
2025-11-20 15:34:36 (7100): VM state change detected. (old = 'poweredoff', new = 'running')
2025-11-20 15:34:36 (7100): Detected: Web Application Enabled (http://localhost:49724)
2025-11-20 15:34:36 (7100): Preference change detected
2025-11-20 15:34:36 (7100): Setting CPU throttle for VM. (95%)
2025-11-20 15:34:36 (7100): Setting checkpoint interval to 900 seconds. (Higher value of (Preference: 60 seconds) or (Vbox_job.xml: 900 seconds))
2025-11-20 15:34:38 (7100): Guest Log: BIOS: Boot : bseqnr=1, bootseq=0032
2025-11-20 15:34:38 (7100): Guest Log: BIOS: Booting from Hard Disk...
2025-11-20 15:34:40 (7100): Guest Log: BIOS: KBD: unsupported int 16h function 03
2025-11-20 15:34:40 (7100): Guest Log: BIOS: AX=0305 BX=0000 CX=0000 DX=0000 
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=81
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=81
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=82
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=82
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=83
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=83
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=84
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=84
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=85
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=85
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=86
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=86
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=87
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=87
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=88
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=88
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=89
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=89
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8a
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8a
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8b
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8b
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8c
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8c
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8d
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8d
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8e
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8e
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk_ext: function 41, unmapped device for ELDL=8f
2025-11-20 15:34:40 (7100): Guest Log: int13_harddisk: function 02, unmapped device for ELDL=8f
2025-11-20 15:34:47 (7100): Guest Log: vgdrvHeartbeatInit: Setting up heartbeat to trigger every 2000 milliseconds
2025-11-20 15:34:47 (7100): Guest Log: vboxguest: misc device minor 58, IRQ 20, I/O port d020, MMIO at 00000000f0000000 (size 0x400000)
2025-11-20 15:34:51 (7100): Guest Log: VBoxService 5.2.32 r132073 (verbosity: 0) linux.amd64 (Jul 12 2019 10:32:28) release log
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000094 main     Log opened 2025-11-20T15:34:49.738301000Z
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000153 main     OS Product: Linux
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000171 main     OS Release: 3.10.0-957.27.2.el7.x86_64
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000189 main     OS Version: #1 SMP Mon Jul 29 17:46:05 UTC 2019
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000204 main     Executable: /opt/VBoxGuestAdditions-5.2.32/sbin/VBoxService
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000205 main     Process ID: 1370
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000205 main     Package type: LINUX_64BITS_GENERIC
2025-11-20 15:34:51 (7100): Guest Log: 00:00:00.000723 main     5.2.32 r132073 started. Verbose level = 0
2025-11-20 15:34:51 (7100): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch...
2025-11-20 15:34:51 (7100): Guest Log: [INFO] Mounting shared directory
2025-11-20 15:34:52 (7100): Guest Log: [INFO] Checking for init_data.xml
2025-11-20 15:35:00 (7100): Guest Log: [INFO] Probing /cvmfs/atlas.cern.ch... OK
2025-11-20 15:35:00 (7100): Guest Log: [INFO] Detected branch: prod
2025-11-20 15:35:01 (7100): Guest Log: This is the prod version of the ATLAS job wrapper
2025-11-20 15:35:01 (7100): Guest Log: Copying input files
2025-11-20 15:35:01 (7100): Guest Log: 00:00:10.005316 timesync vgsvcTimeSyncWorker: Radical guest time change: -39 588 395 913 000ns (GuestNow=1 763 613 301 344 784 000 ns GuestLast=1 763 652 889 740 697 000 ns fSetTimeLastLoop=true )
2025-11-20 15:35:02 (7100): Guest Log: Copied input files into RunAtlas.
2025-11-20 15:35:02 (7100): Guest Log: This VM did not configure a local http proxy via BOINC.
2025-11-20 15:35:02 (7100): Guest Log: Small home clusters do not require a local http proxy but it is suggested if
2025-11-20 15:35:02 (7100): Guest Log: more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
2025-11-20 15:35:02 (7100): Guest Log: Further information can be found at the LHC@home message board.
2025-11-20 15:36:11 (7100): Guest Log: Running cvmfs_config stat atlas.cern.ch
2025-11-20 15:36:11 (7100): Guest Log: VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
2025-11-20 15:36:11 (7100): Guest Log: 2.6.3.0 1652 1 32220 153069 4 1 3117639 4096000 0 65024 0 0 n/a 0 0 http://s1swinburne-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
2025-11-20 15:36:11 (7100): Guest Log: copied the webapp to /var/www
2025-11-20 15:36:11 (7100): Guest Log: ATHENA_PROC_NUMBER=8
2025-11-20 15:36:11 (7100): Guest Log: ATHENA_CORE_NUMBER=8
2025-11-20 15:36:12 (7100): Guest Log: Apptainer command /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/data,/home/atlas/RunAtlas /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 
2025-11-20 15:36:12 (7100): Guest Log:  *** Starting ATLAS job. (PandaID=6891565320 taskID=47493068) ***
2025-11-20 17:14:37 (7100): Status Report: Elapsed Time: '6000.000000'
2025-11-20 17:14:37 (7100): Status Report: CPU Time: '40349.783451'
2025-11-20 18:54:39 (7100): Status Report: Elapsed Time: '12000.000000'
2025-11-20 18:54:39 (7100): Status Report: CPU Time: '87983.206791'
2025-11-20 20:34:40 (7100): Status Report: Elapsed Time: '18000.000000'
2025-11-20 20:34:40 (7100): Status Report: CPU Time: '135510.861454'
2025-11-20 22:14:42 (7100): Status Report: Elapsed Time: '24000.000000'
2025-11-20 22:14:42 (7100): Status Report: CPU Time: '182343.516061'
2025-11-20 22:49:00 (7100): Guest Log:  *** Job finished ***
2025-11-20 22:49:00 (7100): Guest Log:  *** The last 20 lines of the pilot log: ***
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:23,670 | INFO     | [payload] validate_pre thread has finished
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:25,400 | INFO     | [data] queue_monitor thread has finished
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:53,047 | INFO     | [monitor] cgroup control has ended
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:54,049 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 139974794209088)>', '<ExcThread(monitor, started 139973890127616)>']
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:54,519 | WARNING  | job_aborted has been set - aborting pilot monitoring
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:54,519 | INFO     | [monitor] control thread has ended
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,068 | INFO     | all workflow threads have been joined
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,068 | INFO     | end of generic workflow (traces error code: 0)
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,068 | INFO     | traces error code: 0
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,068 | INFO     | pilot has finished (exit code=0, shell exit code=0)
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,149 [wrapper] ==== pilot stdout END ====
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,153 [wrapper] ==== wrapper stdout RESUME ====
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,158 [wrapper] pilotpid: 6105
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,163 [wrapper] Pilot exit status: 0
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,179 [wrapper] pandaids: 6891565320
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,209 [wrapper] cleanup supervisor_pilot 28728 6106
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,219 [wrapper] Test setup, not cleaning
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,224 [wrapper] apfmon messages muted
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,229 [wrapper] ==== wrapper stdout END ====
2025-11-20 22:49:00 (7100): Guest Log: 2025-11-20 11:48:59,233 [wrapper] ==== wrapper stderr END ====
2025-11-20 22:49:00 (7100): Guest Log:  *** Error codes and diagnostics ***
2025-11-20 22:49:00 (7100): Guest Log:     "exeErrorCode": 0,
2025-11-20 22:49:00 (7100): Guest Log:     "exeErrorDiag": "",
2025-11-20 22:49:00 (7100): Guest Log:     "pilotErrorCode": 0,
2025-11-20 22:49:00 (7100): Guest Log:     "pilotErrorDiag": "",
2025-11-20 22:49:00 (7100): Guest Log:  *** Listing of results directory ***
2025-11-20 22:49:00 (7100): Guest Log: total 906252
2025-11-20 22:49:00 (7100): Guest Log: -rw-r--r--. 1 atlas atlas    576529 Nov 18 15:15 pilot3.tar.gz
2025-11-20 22:49:00 (7100): Guest Log: -rw-r--r--. 1 atlas atlas      5112 Nov 18 15:27 queuedata.json
2025-11-20 22:49:00 (7100): Guest Log: -rwx------. 1 atlas atlas     36292 Nov 18 15:27 runpilot2-wrapper.sh
2025-11-20 22:49:00 (7100): Guest Log: -rwxr-xr-x. 1 atlas atlas     15120 Nov 20 04:35 start_atlas.sh
2025-11-20 22:49:00 (7100): Guest Log: -rwxr-xr-x. 1 atlas atlas    590101 Nov 20 04:35 input.tar.gz
2025-11-20 22:49:00 (7100): Guest Log: -rwxr-xr-x. 1 atlas atlas      8647 Nov 20 04:35 init_data.xml
2025-11-20 22:49:00 (7100): Guest Log: lrwxrwxrwx. 1 atlas atlas        20 Nov 20 04:35 EVNT.47493065._000143.pool.root.1 -> /data/./ATLAS.root_0
2025-11-20 22:49:00 (7100): Guest Log: -rw-r--r--. 1 atlas atlas      2773 Nov 20 04:36 pandaJob.out
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas    989427 Nov 20 04:37 agis_schedconf.cvmfs.json
2025-11-20 22:49:00 (7100): Guest Log: drwx------. 5 atlas atlas      4096 Nov 20 04:37 pilot3
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas        95 Nov 20 11:47 pilot_heartbeat.json
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas 913749620 Nov 20 11:47 HITS.47493068._001424.pool.root.1
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas      1039 Nov 20 11:48 memory_monitor_summary.json
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas   1525063 Nov 20 11:48 agis_ddmendpoints.agis.ALL.json
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas   1732532 Nov 20 11:48 log.47493068._001424.job.log.tgz.1
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas      8643 Nov 20 11:48 heartbeat.json
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas      4612 Nov 20 11:48 pilotlog.txt
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas   3466527 Nov 20 11:48 log.47493068._001424.job.log.1
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas       353 Nov 20 11:48 output.list
2025-11-20 22:49:00 (7100): Guest Log: -rw-r--r--. 1 atlas atlas       620 Nov 20 11:48 runtime_log
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas   5222400 Nov 20 11:48 result.tar.gz
2025-11-20 22:49:00 (7100): Guest Log: -rw-r--r--. 1 atlas atlas      8637 Nov 20 11:48 runtime_log.err
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas       660 Nov 20 11:48 jbiNDmYncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmvDFKDmuhYGhm.diag
2025-11-20 22:49:00 (7100): Guest Log: Looking for outputfile HITS.47493068._001424.pool.root.1
2025-11-20 22:49:00 (7100): Guest Log: HITS file was successfully produced
2025-11-20 22:49:00 (7100): Guest Log: -rw-------. 1 atlas atlas 913749620 Nov 20 11:47 /home/atlas/RunAtlas/HITS.47493068._001424.pool.root.1
2025-11-20 22:49:03 (7100): Guest Log: Successfully finished the ATLAS job!
2025-11-20 22:49:03 (7100): Guest Log: Copying the results back to the shared directory!
2025-11-20 22:49:03 (7100): Guest Log:  *** Contents of shared directory: ***
2025-11-20 22:49:03 (7100): Guest Log: total 1297188
2025-11-20 22:49:03 (7100): Guest Log: -rwxrwxrwx. 1 root root 408720006 Nov 20 04:34 ATLAS.root_0
2025-11-20 22:49:03 (7100): Guest Log: -rwxrwxrwx. 1 root root 913749620 Nov 20  2025 HITS.pool.root.1
2025-11-20 22:49:03 (7100): Guest Log: -rwxrwxrwx. 1 root root      8647 Nov 20 04:34 init_data.xml
2025-11-20 22:49:03 (7100): Guest Log: -rwxrwxrwx. 1 root root    590101 Nov 19 01:43 input.tar.gz
2025-11-20 22:49:03 (7100): Guest Log: -rwxrwxrwx. 1 root root   5222400 Nov 20  2025 result.tar.gz
2025-11-20 22:49:03 (7100): Guest Log: -rwxrwxrwx. 1 root root     15120 Nov 19 01:44 start_atlas.sh
2025-11-20 22:49:03 (7100): Guest Log:  *** Success! Shutting down the machine. ***
2025-11-20 22:49:03 (7100): VM Completion File Detected.
2025-11-20 22:49:03 (7100): Powering off VM.
2025-11-20 22:49:04 (7100): Successfully stopped VM.
2025-11-20 22:49:04 (7100): Deregistering VM. (boinc_a3eb0b654d3296e4, slot#0)
2025-11-20 22:49:04 (7100): Removing network bandwidth throttle group from VM.
2025-11-20 22:49:04 (7100): Removing VM from VirtualBox.
2025-11-20 22:49:09 (7100): called boinc_finish(0)

</stderr_txt>
]]>

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