Stderr output

<core_client_version>8.0.4</core_client_version>
<![CDATA[
<stderr_txt>
05:04:37 (2586502): wrapper (7.7.26015): starting
05:04:37 (2586502): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 05:04:37] Arguments: --nthreads 12
[2025-11-20 05:04:37] Threads: 12
[2025-11-20 05:04:37] Checking for CVMFS
[2025-11-20 05:04:40] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:04:42] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:04:42] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:04:42] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:04:42] 2.13.3.0 2586732 0 25588 153078 3 1 5024977 6144000 0 130560 0 0 0.000 1292 1395 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-20 05:04:42] CVMFS is ok
[2025-11-20 05:04:42] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:04:42] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-20 05:04:42] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-20 05:04:42] Further information can be found at the LHC@home message board.
[2025-11-20 05:04:42] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:04:42] Checking for apptainer binary...
[2025-11-20 05:04:42] apptainer is not installed, using version from CVMFS
[2025-11-20 05:04:42] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:04:43] ace
[2025-11-20 05:04:43] apptainer works
[2025-11-20 05:04:43] Set ATHENA_PROC_NUMBER=12
[2025-11-20 05:04:43] Set ATHENA_CORE_NUMBER=12
[2025-11-20 05:04:43] Starting ATLAS job with PandaID=6891601604
[2025-11-20 05:04:43] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
05:48:23 (2613338): wrapper (7.7.26015): starting
05:48:23 (2613338): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 05:48:23] Arguments: --nthreads 12
[2025-11-20 05:48:23] Threads: 12
[2025-11-20 05:48:23] This job has been restarted, cleaning up previous attempt
[2025-11-20 05:48:23] Checking for CVMFS
[2025-11-20 05:48:25] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 05:48:27] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 05:48:27] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 05:48:27] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 05:48:27] 2.13.3.0 2613569 0 29656 153080 3 1 5047904 6144000 0 130560 0 0 100.000 0 0 http://s1fnal-cvmfs.openhtc.io:8080/cvmfs/atlas.cern.ch DIRECT 1
[2025-11-20 05:48:27] CVMFS is ok
[2025-11-20 05:48:27] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 05:48:27] Small home clusters do not require a local http proxy but it is suggested if
[2025-11-20 05:48:27] more than 10 cores throughout the same LAN segment are regularly running ATLAS like tasks.
[2025-11-20 05:48:27] Further information can be found at the LHC@home message board.
[2025-11-20 05:48:27] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 05:48:27] Checking for apptainer binary...
[2025-11-20 05:48:27] apptainer is not installed, using version from CVMFS
[2025-11-20 05:48:27] Checking apptainer works with /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 05:48:27] ace
[2025-11-20 05:48:27] apptainer works
[2025-11-20 05:48:27] Set ATHENA_PROC_NUMBER=12
[2025-11-20 05:48:27] Set ATHENA_CORE_NUMBER=12
[2025-11-20 05:48:27] Starting ATLAS job with PandaID=6891601604
[2025-11-20 05:48:27] Running command: /cvmfs/atlas.cern.ch/repo/containers/sw/apptainer/x86_64-el7/current/bin/apptainer exec -B /cvmfs,/var/lib/boinc-client/slots/11 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 12:31:24]  *** The last 200 lines of the pilot log: ***
[2025-11-20 12:31:24] 2025-11-20 18:30:46,660 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 12:31:24] 2025-11-20 18:30:46,660 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 12:31:24] 2025-11-20 18:30:46,664 | INFO     | fitting pss+swap vs Time
[2025-11-20 12:31:24] 2025-11-20 18:30:46,664 | INFO     | sum of square deviations: 19110203960.794952
[2025-11-20 12:31:24] 2025-11-20 18:30:46,666 | INFO     | sum of deviations: 2374554521118.183
[2025-11-20 12:31:24] 2025-11-20 18:30:46,666 | INFO     | mean x: 1763651356.9772153
[2025-11-20 12:31:24] 2025-11-20 18:30:46,666 | INFO     | mean y: 13070329.13164557
[2025-11-20 12:31:24] 2025-11-20 18:30:46,666 | INFO     | intersect: -219130917457.60342
[2025-11-20 12:31:24] 2025-11-20 18:30:46,667 | INFO     | chi2: 15.474299899868258
[2025-11-20 12:31:24] 2025-11-20 18:30:46,667 | INFO     | sum of square deviations: 18393759413.459038
[2025-11-20 12:31:24] 2025-11-20 18:30:46,669 | INFO     | sum of deviations: 2922391009435.9526
[2025-11-20 12:31:24] 2025-11-20 18:30:46,669 | INFO     | mean x: 1763651204.4897435
[2025-11-20 12:31:24] 2025-11-20 18:30:46,669 | INFO     | mean y: 13186640.487179488
[2025-11-20 12:31:24] 2025-11-20 18:30:46,669 | INFO     | intersect: -280194807164.7588
[2025-11-20 12:31:24] 2025-11-20 18:30:46,669 | INFO     | chi2: 12.72098813678932
[2025-11-20 12:31:24] 2025-11-20 18:30:46,669 | INFO     | current chi2=12.72098813678932 (change=17.7928034282338 %)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,669 | INFO     | right removable region: 389
[2025-11-20 12:31:24] 2025-11-20 18:30:46,670 | INFO     | sum of square deviations: 18393571779.407627
[2025-11-20 12:31:24] 2025-11-20 18:30:46,672 | INFO     | sum of deviations: 1679417618051.4136
[2025-11-20 12:31:24] 2025-11-20 18:30:46,672 | INFO     | mean x: 1763651509.4846153
[2025-11-20 12:31:24] 2025-11-20 18:30:46,672 | INFO     | mean y: 13218172.902564103
[2025-11-20 12:31:24] 2025-11-20 18:30:46,672 | INFO     | intersect: -161016268250.57782
[2025-11-20 12:31:24] 2025-11-20 18:30:46,673 | INFO     | chi2: 11.075229707091681
[2025-11-20 12:31:24] 2025-11-20 18:30:46,673 | INFO     | current chi2=11.075229707091681 (change=28.428234047693678 %)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,673 | INFO     | sum of square deviations: 17695151211.906475
[2025-11-20 12:31:24] 2025-11-20 18:30:46,675 | INFO     | sum of deviations: 1075655457237.7965
[2025-11-20 12:31:24] 2025-11-20 18:30:46,675 | INFO     | mean x: 1763651661.9844155
[2025-11-20 12:31:24] 2025-11-20 18:30:46,675 | INFO     | mean y: 13350001.966233766
[2025-11-20 12:31:24] 2025-11-20 18:30:46,675 | INFO     | intersect: -107195766900.27101
[2025-11-20 12:31:24] 2025-11-20 18:30:46,675 | INFO     | chi2: 7.943832058777134
[2025-11-20 12:31:24] 2025-11-20 18:30:46,675 | INFO     | current chi2=7.943832058777134 (change=28.273884435186513 %)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,676 | INFO     | sum of square deviations: 17014637956.90522
[2025-11-20 12:31:24] 2025-11-20 18:30:46,677 | INFO     | sum of deviations: 483260016654.6
[2025-11-20 12:31:24] 2025-11-20 18:30:46,678 | INFO     | mean x: 1763651814.4842105
[2025-11-20 12:31:24] 2025-11-20 18:30:46,678 | INFO     | mean y: 13482760.35
[2025-11-20 12:31:24] 2025-11-20 18:30:46,678 | INFO     | intersect: -50078820549.26328
[2025-11-20 12:31:24] 2025-11-20 18:30:46,678 | INFO     | chi2: 5.026435802726801
[2025-11-20 12:31:24] 2025-11-20 18:30:46,678 | INFO     | current chi2=5.026435802726801 (change=36.72530127102705 %)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,678 | INFO     | sum of square deviations: 16351799451.903942
[2025-11-20 12:31:24] 2025-11-20 18:30:46,680 | INFO     | sum of deviations: 128627013178.92773
[2025-11-20 12:31:24] 2025-11-20 18:30:46,680 | INFO     | mean x: 1763651966.984
[2025-11-20 12:31:24] 2025-11-20 18:30:46,680 | INFO     | mean y: 13564091.821333334
[2025-11-20 12:31:24] 2025-11-20 18:30:46,680 | INFO     | intersect: -13859727680.594505
[2025-11-20 12:31:24] 2025-11-20 18:30:46,680 | INFO     | chi2: 3.7822513818425114
[2025-11-20 12:31:24] 2025-11-20 18:30:46,681 | INFO     | current chi2=3.7822513818425114 (change=24.752816303937063 %)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,681 | INFO     | left removable region: 40
[2025-11-20 12:31:24] 2025-11-20 18:30:46,681 | INFO     | sum of square deviations: 13181084350.0
[2025-11-20 12:31:24] 2025-11-20 18:30:46,682 | INFO     | sum of deviations: 108471438299.99998
[2025-11-20 12:31:24] 2025-11-20 18:30:46,683 | INFO     | mean x: 1763652394.0
[2025-11-20 12:31:24] 2025-11-20 18:30:46,683 | INFO     | mean y: 13846249.340974212
[2025-11-20 12:31:24] 2025-11-20 18:30:46,683 | INFO     | intersect: -14499824004.07928
[2025-11-20 12:31:24] 2025-11-20 18:30:46,683 | INFO     | chi2: 0.01470667853602961
[2025-11-20 12:31:24] 2025-11-20 18:30:46,683 | INFO     | current memory leak: 8.23 B/s (using 349 data points, chi2=0.01)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | could have reported an average CPU frequency of 2313 MHz (17 samples)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | ..............................
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . Timing measurements:
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . get job = 0 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . initial setup = 0 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . payload setup = 3 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . stage-in = 0 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . payload execution = 24092 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . stage-out = 3 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | . log creation = 0 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,684 | INFO     | ..............................
[2025-11-20 12:31:24] 2025-11-20 18:30:46,733 | INFO     | 
[2025-11-20 12:31:24] 2025-11-20 18:30:46,734 | INFO     | job summary report
[2025-11-20 12:31:24] 2025-11-20 18:30:46,734 | INFO     | --------------------------------------------------
[2025-11-20 12:31:24] 2025-11-20 18:30:46,734 | INFO     | PanDA job id: 6891601604
[2025-11-20 12:31:24] 2025-11-20 18:30:46,734 | INFO     | task id: 47493068
[2025-11-20 12:31:24] 2025-11-20 18:30:46,734 | INFO     | errors: (none)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,734 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 12:31:24] 2025-11-20 18:30:46,734 | INFO     | pilot state: finished 
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | transexitcode: 0
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | exeerrorcode: 0
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | exeerrordiag: 
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | exitcode: 0
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | exitmsg: OK
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | cpuconsumptiontime: 282475 s
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | nevents: 1000
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | neventsw: 0
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | pid: 2624360
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | pgrp: 2624360
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | corecount: 12
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | event service: False
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | sizes: {0: 2297207, 2: 2297469, 11: 2297497, 24100: 2333803, 24104: 2344409, 24106: 2344465, 24115: 2344903}
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | --------------------------------------------------
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | 
[2025-11-20 12:31:24] 2025-11-20 18:30:46,735 | INFO     | executing command: ls -lF /var/lib/boinc-client/slots/11
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,749 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | job 6891601604 has completed (purged errors)
[2025-11-20 12:31:24] 2025-11-20 18:30:46,750 | INFO     | overall cleanup function is called
[2025-11-20 12:31:24] 2025-11-20 18:30:46,859 | INFO     | PID=2617771 has CPU usage=7.6% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 12:31:24] 2025-11-20 18:30:47,766 | INFO     | --- collectZombieJob: --- 10, [2624360]
[2025-11-20 12:31:24] 2025-11-20 18:30:47,766 | INFO     | zombie collector waiting for pid 2624360
[2025-11-20 12:31:24] 2025-11-20 18:30:47,766 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 12:31:24] 2025-11-20 18:30:47,766 | INFO     | collected zombie processes
[2025-11-20 12:31:24] 2025-11-20 18:30:47,766 | INFO     | will attempt to kill all subprocesses of pid=2624360
[2025-11-20 12:31:24] 2025-11-20 18:30:47,846 | INFO     | process IDs to be killed: [2624360] (in reverse order)
[2025-11-20 12:31:24] 2025-11-20 18:30:47,883 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 12:31:24] 2025-11-20 18:30:47,883 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 12:31:24] 2025-11-20 18:30:47,886 | INFO     | did not find any defunct processes belonging to 2624360
[2025-11-20 12:31:24] 2025-11-20 18:30:47,889 | INFO     | did not find any defunct processes belonging to 2624360
[2025-11-20 12:31:24] 2025-11-20 18:30:47,889 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 12:31:24] 2025-11-20 18:30:47,889 | INFO     | ready for new job
[2025-11-20 12:31:24] 2025-11-20 18:30:47,889 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 12:31:24] 2025-11-20 18:30:47,892 | INFO     | ***************************************
[2025-11-20 12:31:24] 2025-11-20 18:30:47,892 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 12:31:24] 2025-11-20 18:30:47,892 | INFO     | ***************************************
[2025-11-20 12:31:24] 2025-11-20 18:30:47,892 | INFO     | 
[2025-11-20 12:31:24] 2025-11-20 18:30:47,893 | INFO     | architecture information:
[2025-11-20 12:31:24] 2025-11-20 18:30:47,893 | INFO     | executing command: cat /etc/os-release
[2025-11-20 12:31:24] 2025-11-20 18:30:47,905 | INFO     | cat /etc/os-release:
[2025-11-20 12:31:24] NAME="CentOS Linux"
[2025-11-20 12:31:24] VERSION="7 (Core)"
[2025-11-20 12:31:24] ID="centos"
[2025-11-20 12:31:24] ID_LIKE="rhel fedora"
[2025-11-20 12:31:24] VERSION_ID="7"
[2025-11-20 12:31:24] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 12:31:24] ANSI_COLOR="0;31"
[2025-11-20 12:31:24] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 12:31:24] HOME_URL="https://www.centos.org/"
[2025-11-20 12:31:24] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 12:31:24] 
[2025-11-20 12:31:24] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 12:31:24] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 12:31:24] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 12:31:24] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 12:31:24] 
[2025-11-20 12:31:24] 2025-11-20 18:30:47,905 | INFO     | ***************************************
[2025-11-20 12:31:24] 2025-11-20 18:30:48,406 | INFO     | executing command: df -mP /var/lib/boinc-client/slots/11
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | INFO     | sufficient remaining disk space (18314428416 B)
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | INFO     | update_server=False
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | INFO     | aborting loop
[2025-11-20 12:31:24] 2025-11-20 18:30:48,426 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 12:31:24] 2025-11-20 18:30:49,022 | INFO     | all data control threads have been joined
[2025-11-20 12:31:24] 2025-11-20 18:30:49,132 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 12:31:24] 2025-11-20 18:30:49,281 | INFO     | all payload control threads have been joined
[2025-11-20 12:31:24] 2025-11-20 18:30:49,418 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 12:31:24] 2025-11-20 18:30:49,430 | INFO     | [job] job monitor thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:49,431 | INFO     | [job] retrieve thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:49,431 | INFO     | [job] queue monitor thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:49,654 | INFO     | [payload] failed_post thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:49,656 | INFO     | [payload] validate_post thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:49,754 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:49,822 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:50,027 | INFO     | [data] control thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:50,084 | INFO     | all job control threads have been joined
[2025-11-20 12:31:24] 2025-11-20 18:30:50,262 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:50,286 | INFO     | [payload] control thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:50,786 | INFO     | [data] copytool_in thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:50,838 | INFO     | [job] validate thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:50,870 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:51,086 | INFO     | [job] control thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:51,422 | INFO     | [data] copytool_out thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:30:53,138 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 12:31:24] 2025-11-20 18:31:18,415 | INFO     | [monitor] cgroup control has ended
[2025-11-20 12:31:24] 2025-11-20 18:31:18,884 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140081582933824)>', '<ExcThread(monitor, started 140081188808448)>']
[2025-11-20 12:31:24] 2025-11-20 18:31:19,032 | INFO     | PID=2617771 has CPU usage=0.7% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 12:31:24] 2025-11-20 18:31:19,032 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 12:31:24] 2025-11-20 18:31:19,033 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 12:31:24] 2025-11-20 18:31:19,033 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 12:31:24] 2025-11-20 18:31:19,033 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 12:31:24] 2025-11-20 18:31:19,033 | INFO     | [monitor] control thread has ended
[2025-11-20 12:31:24] 2025-11-20 18:31:23,910 | INFO     | all workflow threads have been joined
[2025-11-20 12:31:24] 2025-11-20 18:31:23,910 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 12:31:24] 2025-11-20 18:31:23,910 | INFO     | traces error code: 0
[2025-11-20 12:31:24] 2025-11-20 18:31:23,911 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 12:31:24] 2025-11-20 18:31:24,010 [wrapper] ==== pilot stdout END ====
[2025-11-20 12:31:24] 2025-11-20 18:31:24,012 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 12:31:24] 2025-11-20 18:31:24,014 [wrapper] pilotpid: 2617771
[2025-11-20 12:31:24] 2025-11-20 18:31:24,016 [wrapper] Pilot exit status: 0
[2025-11-20 12:31:24] 2025-11-20 18:31:24,025 [wrapper] pandaids: 6891601604 6891601604
[2025-11-20 12:31:24] 2025-11-20 18:31:24,047 [wrapper] cleanup supervisor_pilot 2737000 2617772
[2025-11-20 12:31:24] 2025-11-20 18:31:24,049 [wrapper] Test setup, not cleaning
[2025-11-20 12:31:24] 2025-11-20 18:31:24,051 [wrapper] apfmon messages muted
[2025-11-20 12:31:24] 2025-11-20 18:31:24,053 [wrapper] ==== wrapper stdout END ====
[2025-11-20 12:31:24] 2025-11-20 18:31:24,054 [wrapper] ==== wrapper stderr END ====
[2025-11-20 12:31:24]  *** Error codes and diagnostics ***
[2025-11-20 12:31:24]     "exeErrorCode": 0,
[2025-11-20 12:31:24]     "exeErrorDiag": "",
[2025-11-20 12:31:24]     "pilotErrorCode": 0,
[2025-11-20 12:31:24]     "pilotErrorDiag": "",
[2025-11-20 12:31:24]  *** Listing of results directory ***
[2025-11-20 12:31:24] total 1706684
[2025-11-20 12:31:24] drwx------ 5 boinc boinc      4096 Nov  5 11:16 pilot3
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc    576529 Nov 18 12:50 pilot3.tar.gz
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc      5112 Nov 18 13:15 queuedata.json
[2025-11-20 12:31:24] -rwx------ 1 boinc boinc     36292 Nov 18 13:15 runpilot2-wrapper.sh
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc       100 Nov 20 05:04 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 12:31:24] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 05:04 run_atlas
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc       105 Nov 20 05:04 job.xml
[2025-11-20 12:31:24] -rw-r--r-- 2 boinc boinc     15120 Nov 20 05:04 start_atlas.sh
[2025-11-20 12:31:24] drwxrwx--x 2 boinc boinc      4096 Nov 20 05:04 shared
[2025-11-20 12:31:24] -rw-r--r-- 2 boinc boinc    590101 Nov 20 05:04 input.tar.gz
[2025-11-20 12:31:24] -rw-r--r-- 3 boinc boinc 407962941 Nov 20 05:04 EVNT.47493065._000836.pool.root.1
[2025-11-20 12:31:24] -rw-r--r-- 3 boinc boinc 407962941 Nov 20 05:04 ATLAS.root_0
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc         0 Nov 20 05:04 boinc_lockfile
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc      6998 Nov 20 05:48 init_data.xml
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc      2772 Nov 20 05:48 pandaJob.out
[2025-11-20 12:31:24] -rw------- 1 boinc boinc    989448 Nov 20 05:48 agis_schedconf.cvmfs.json
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc       532 Nov 20 12:24 boinc_task_state.xml
[2025-11-20 12:31:24] -rw------- 1 boinc boinc 916658459 Nov 20 12:30 HITS.47493068._007008.pool.root.1
[2025-11-20 12:31:24] -rw------- 1 boinc boinc      1062 Nov 20 12:30 memory_monitor_summary.json
[2025-11-20 12:31:24] -rw------- 1 boinc boinc   1526164 Nov 20 12:30 agis_ddmendpoints.agis.ALL.json
[2025-11-20 12:31:24] -rw------- 1 boinc boinc   2141038 Nov 20 12:30 log.47493068._007008.job.log.tgz.1
[2025-11-20 12:31:24] -rw------- 1 boinc boinc      8647 Nov 20 12:30 heartbeat.json
[2025-11-20 12:31:24] -rw------- 1 boinc boinc        97 Nov 20 12:31 pilot_heartbeat.json
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc      8192 Nov 20 12:31 boinc_mmap_file
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc        29 Nov 20 12:31 wrapper_checkpoint.txt
[2025-11-20 12:31:24] -rw------- 1 boinc boinc      4756 Nov 20 12:31 pilotlog.txt
[2025-11-20 12:31:24] -rw------- 1 boinc boinc   3424558 Nov 20 12:31 log.47493068._007008.job.log.1
[2025-11-20 12:31:24] -rw------- 1 boinc boinc       353 Nov 20 12:31 output.list
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc       620 Nov 20 12:31 runtime_log
[2025-11-20 12:31:24] -rw------- 1 boinc boinc   5580800 Nov 20 12:31 result.tar.gz
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc      8840 Nov 20 12:31 runtime_log.err
[2025-11-20 12:31:24] -rw------- 1 boinc boinc       777 Nov 20 12:31 HBAMDmuLgf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmHmFKDmcKM67m.diag
[2025-11-20 12:31:24] -rw-r--r-- 1 boinc boinc     23536 Nov 20 12:31 stderr.txt
[2025-11-20 12:31:24] HITS file was successfully produced:
[2025-11-20 12:31:24] -rw------- 1 boinc boinc 916658459 Nov 20 12:30 shared/HITS.pool.root.1
[2025-11-20 12:31:24]  *** Contents of shared directory: ***
[2025-11-20 12:31:24] total 1299636
[2025-11-20 12:31:24] -rw-r--r-- 2 boinc boinc     15120 Nov 20 05:04 start_atlas.sh
[2025-11-20 12:31:24] -rw-r--r-- 2 boinc boinc    590101 Nov 20 05:04 input.tar.gz
[2025-11-20 12:31:24] -rw-r--r-- 3 boinc boinc 407962941 Nov 20 05:04 ATLAS.root_0
[2025-11-20 12:31:24] -rw------- 1 boinc boinc 916658459 Nov 20 12:30 HITS.pool.root.1
[2025-11-20 12:31:24] -rw------- 1 boinc boinc   5580800 Nov 20 12:31 result.tar.gz
12:31:25 (2613338): run_atlas exited; CPU time 282284.690167
12:31:25 (2613338): called boinc_finish(0)

</stderr_txt>
]]>

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