Stderr output

<core_client_version>8.1.0</core_client_version>
<![CDATA[
<stderr_txt>
00:02:02 (801975): wrapper (7.7.26015): starting
00:02:02 (801975): wrapper: running run_atlas (--nthreads 9)
[2025-11-19 00:02:02] Arguments: --nthreads 9
[2025-11-19 00:02:02] Threads: 9
[2025-11-19 00:02:02] Checking for CVMFS
[2025-11-19 00:02:03] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-19 00:02:04] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-19 00:02:04] Running cvmfs_config stat atlas.cern.ch
[2025-11-19 00:02:05] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-19 00:02:05] 2.13.3.0 11393 19525 222228 153030 1 171 31960197 32935937 20162 16776704 0 59287674 99.353 97249800 41431 http://cvmfs-s1fnal.opensciencegrid.org:8000/cvmfs/atlas.cern.ch http://192.41.231.239:6081 1
[2025-11-19 00:02:05] CVMFS is ok
[2025-11-19 00:02:05] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-19 00:02:05] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-19 00:02:05] Further information can be found at the LHC@home message board.
[2025-11-19 00:02:05] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-19 00:02:05] Checking for apptainer binary...
[2025-11-19 00:02:05] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-19 00:02:05] Running /usr/bin/apptainer --version
[2025-11-19 00:02:05] apptainer version 1.4.4-1.el9
[2025-11-19 00:02:05] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-19 00:02:06] c6-5-37-2.aglt2.org
[2025-11-19 00:02:06] apptainer works
[2025-11-19 00:02:06] Set ATHENA_PROC_NUMBER=9
[2025-11-19 00:02:06] Set ATHENA_CORE_NUMBER=9
[2025-11-19 00:02:06] Starting ATLAS job with PandaID=6891564479
[2025-11-19 00:02:06] Running command: /usr/bin/apptainer exec -B /cvmfs,/tmp/boinchome/slots/5 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 13:12:02]  *** The last 200 lines of the pilot log: ***
[2025-11-20 13:12:02] 2025-11-20 18:11:07,391 | INFO     | .. there are 24 such processes running
[2025-11-20 13:12:02] 2025-11-20 18:11:07,410 | INFO     | monitor loop #7822: job 0:6891564479 is in state 'finished'
[2025-11-20 13:12:02] 2025-11-20 18:11:07,410 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:12:02] 2025-11-20 18:11:08,394 | INFO     | time since job start (133660s) is within the limit (172800.0s)
[2025-11-20 13:12:02] 2025-11-20 18:11:09,915 | INFO     | monitor loop #7823: job 0:6891564479 is in state 'finished'
[2025-11-20 13:12:02] 2025-11-20 18:11:09,915 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:12:02] 2025-11-20 18:11:10,402 | INFO     | time since job start (133662s) is within the limit (172800.0s)
[2025-11-20 13:12:02] 2025-11-20 18:11:12,426 | INFO     | monitor loop #7824: job 0:6891564479 is in state 'finished'
[2025-11-20 13:12:02] 2025-11-20 18:11:12,427 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:12:02] 2025-11-20 18:11:12,433 | INFO     | time since job start (133664s) is within the limit (172800.0s)
[2025-11-20 13:12:02] 2025-11-20 18:11:14,457 | INFO     | time since job start (133666s) is within the limit (172800.0s)
[2025-11-20 13:12:02] 2025-11-20 18:11:14,948 | INFO     | monitor loop #7825: job 0:6891564479 is in state 'finished'
[2025-11-20 13:12:02] 2025-11-20 18:11:14,949 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:12:02] 2025-11-20 18:11:16,466 | INFO     | time since job start (133668s) is within the limit (172800.0s)
[2025-11-20 13:12:02] 2025-11-20 18:11:17,113 | INFO     | CPU arch script returned: x86-64-v4
[2025-11-20 13:12:02] 2025-11-20 18:11:17,132 | INFO     | found 28 cores (14 cores per socket, 2 sockets) HT, CPU MHz: 2841.457964285714
[2025-11-20 13:12:02] 2025-11-20 18:11:17,152 | INFO     | using path: /tmp/boinchome/slots/5/PanDA_Pilot-6891564479/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 13:12:02] 2025-11-20 18:11:17,152 | INFO     | extracted standard info from prmon json
[2025-11-20 13:12:02] 2025-11-20 18:11:17,153 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 13:12:02] 2025-11-20 18:11:17,153 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 13:12:02] 2025-11-20 18:11:17,202 | INFO     | fitting pss+swap vs Time
[2025-11-20 13:12:02] 2025-11-20 18:11:17,206 | INFO     | sum of square deviations: 3247501518215.0913
[2025-11-20 13:12:02] 2025-11-20 18:11:17,515 | INFO     | monitor loop #7826: job 0:6891564479 is in state 'finished'
[2025-11-20 13:12:02] 2025-11-20 18:11:17,516 | INFO     | will abort job monitoring soon since job state=finished (job is still in queue)
[2025-11-20 13:12:02] 2025-11-20 18:11:17,623 | INFO     | sum of deviations: 16888598177938.797
[2025-11-20 13:12:02] 2025-11-20 18:11:17,635 | INFO     | mean x: 1763595491.203839
[2025-11-20 13:12:02] 2025-11-20 18:11:17,635 | INFO     | mean y: 3014990.908592322
[2025-11-20 13:12:02] 2025-11-20 18:11:17,635 | INFO     | intersect: -9168545186.139956
[2025-11-20 13:12:02] 2025-11-20 18:11:17,638 | INFO     | chi2: 28.545067178582798
[2025-11-20 13:12:02] 2025-11-20 18:11:17,650 | INFO     | sum of square deviations: 3225289705414.8687
[2025-11-20 13:12:02] 2025-11-20 18:11:18,118 | INFO     | sum of deviations: 17682956876555.637
[2025-11-20 13:12:02] 2025-11-20 18:11:18,119 | INFO     | mean x: 1763595338.7191937
[2025-11-20 13:12:02] 2025-11-20 18:11:18,119 | INFO     | mean y: 3020443.3811268895
[2025-11-20 13:12:02] 2025-11-20 18:11:18,119 | INFO     | intersect: -9666058359.031334
[2025-11-20 13:12:02] 2025-11-20 18:11:18,134 | INFO     | chi2: 25.140181881032223
[2025-11-20 13:12:02] 2025-11-20 18:11:18,134 | INFO     | current chi2=25.140181881032223 (change=11.92810399166004 %)
[2025-11-20 13:12:02] 2025-11-20 18:11:18,134 | INFO     | right removable region: 2182
[2025-11-20 13:12:02] 2025-11-20 18:11:18,147 | INFO     | sum of square deviations: 3225280891293.3022
[2025-11-20 13:12:02] 2025-11-20 18:11:18,478 | INFO     | sum of deviations: 15936487613098.252
[2025-11-20 13:12:02] 2025-11-20 18:11:18,479 | INFO     | mean x: 1763595643.7187357
[2025-11-20 13:12:02] 2025-11-20 18:11:18,479 | INFO     | mean y: 3021525.51672011
[2025-11-20 13:12:02] 2025-11-20 18:11:18,479 | INFO     | intersect: -8711109453.434284
[2025-11-20 13:12:02] 2025-11-20 18:11:18,490 | INFO     | chi2: 24.016551588573
[2025-11-20 13:12:02] 2025-11-20 18:11:18,490 | INFO     | current chi2=24.016551588573 (change=15.864441872491074 %)
[2025-11-20 13:12:02] 2025-11-20 18:11:18,490 | INFO     | left removable region: 10
[2025-11-20 13:12:02] 2025-11-20 18:11:18,503 | INFO     | sum of square deviations: 3176763170441.7417
[2025-11-20 13:12:02] 2025-11-20 18:11:18,519 | INFO     | time since job start (133670s) is within the limit (172800.0s)
[2025-11-20 13:12:02] 2025-11-20 18:11:18,768 | INFO     | sum of deviations: 16056272173196.357
[2025-11-20 13:12:02] 2025-11-20 18:11:18,769 | INFO     | mean x: 1763595613.252302
[2025-11-20 13:12:02] 2025-11-20 18:11:18,769 | INFO     | mean y: 3033646.2366482504
[2025-11-20 13:12:02] 2025-11-20 18:11:18,769 | INFO     | intersect: -8910684390.193665
[2025-11-20 13:12:02] 2025-11-20 18:11:18,775 | INFO     | chi2: 16.85355467308382
[2025-11-20 13:12:02] 2025-11-20 18:11:18,776 | INFO     | current memory leak: 5.05 B/s (using 2172 data points, chi2=16.85)
[2025-11-20 13:12:02] 2025-11-20 18:11:18,778 | INFO     | could have reported an average CPU frequency of 2890 MHz (76 samples)
[2025-11-20 13:12:02] 2025-11-20 18:11:18,778 | INFO     | ..............................
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . Timing measurements:
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . get job = 3 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . initial setup = 8 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . payload setup = 57 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . stage-in = 0 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . payload execution = 133475 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . stage-out = 14 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | . log creation = 5 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,783 | INFO     | ..............................
[2025-11-20 13:12:02] 2025-11-20 18:11:18,963 | INFO     | 
[2025-11-20 13:12:02] 2025-11-20 18:11:18,963 | INFO     | job summary report
[2025-11-20 13:12:02] 2025-11-20 18:11:18,963 | INFO     | --------------------------------------------------
[2025-11-20 13:12:02] 2025-11-20 18:11:18,963 | INFO     | PanDA job id: 6891564479
[2025-11-20 13:12:02] 2025-11-20 18:11:18,963 | INFO     | task id: 47493068
[2025-11-20 13:12:02] 2025-11-20 18:11:18,963 | INFO     | errors: (none)
[2025-11-20 13:12:02] 2025-11-20 18:11:18,963 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | pilot state: finished 
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | transexitcode: 0
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | exeerrorcode: 0
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | exeerrordiag: 
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | exitcode: 0
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | exitmsg: OK
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | cpuconsumptiontime: 252460 s
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | nevents: 1000
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | neventsw: 0
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | pid: 831028
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | pgrp: 831028
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | corecount: 9
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | event service: False
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | sizes: {0: 2296967, 1: 2297051, 2: 2297250, 13: 2297250, 24: 2297306, 32: 2297596, 35: 2297752, 133538: 2385051, 133554: 2395697, 133593: 2395887}
[2025-11-20 13:12:02] 2025-11-20 18:11:18,964 | INFO     | --------------------------------------------------
[2025-11-20 13:12:02] 2025-11-20 18:11:18,965 | INFO     | 
[2025-11-20 13:12:02] 2025-11-20 18:11:18,965 | INFO     | executing command: ls -lF /tmp/boinchome/slots/5
[2025-11-20 13:12:02] 2025-11-20 18:11:19,315 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,315 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,315 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,315 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,315 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,315 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,316 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 13:12:02] 2025-11-20 18:11:19,317 | INFO     | job 6891564479 has completed (purged errors)
[2025-11-20 13:12:02] 2025-11-20 18:11:19,317 | INFO     | overall cleanup function is called
[2025-11-20 13:12:02] 2025-11-20 18:11:20,412 | INFO     | --- collectZombieJob: --- 10, [831028]
[2025-11-20 13:12:02] 2025-11-20 18:11:20,413 | INFO     | zombie collector waiting for pid 831028
[2025-11-20 13:12:02] 2025-11-20 18:11:20,413 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 13:12:02] 2025-11-20 18:11:20,413 | INFO     | collected zombie processes
[2025-11-20 13:12:02] 2025-11-20 18:11:20,413 | INFO     | will attempt to kill all subprocesses of pid=831028
[2025-11-20 13:12:02] 2025-11-20 18:11:22,382 | INFO     | process IDs to be killed: [831028] (in reverse order)
[2025-11-20 13:12:02] 2025-11-20 18:11:22,599 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 13:12:02] 2025-11-20 18:11:22,599 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 13:12:02] 2025-11-20 18:11:22,670 | INFO     | did not find any defunct processes belonging to 831028
[2025-11-20 13:12:02] 2025-11-20 18:11:22,695 | INFO     | did not find any defunct processes belonging to 831028
[2025-11-20 13:12:02] 2025-11-20 18:11:22,701 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 13:12:02] 2025-11-20 18:11:22,701 | INFO     | ready for new job
[2025-11-20 13:12:02] 2025-11-20 18:11:22,701 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 13:12:02] 2025-11-20 18:11:22,716 | INFO     | ***************************************
[2025-11-20 13:12:02] 2025-11-20 18:11:22,717 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 13:12:02] 2025-11-20 18:11:22,717 | INFO     | ***************************************
[2025-11-20 13:12:02] 2025-11-20 18:11:22,717 | INFO     | 
[2025-11-20 13:12:02] 2025-11-20 18:11:22,720 | INFO     | architecture information:
[2025-11-20 13:12:02] 2025-11-20 18:11:22,724 | INFO     | executing command: cat /etc/os-release
[2025-11-20 13:12:02] 2025-11-20 18:11:22,789 | INFO     | cat /etc/os-release:
[2025-11-20 13:12:02] NAME="CentOS Linux"
[2025-11-20 13:12:02] VERSION="7 (Core)"
[2025-11-20 13:12:02] ID="centos"
[2025-11-20 13:12:02] ID_LIKE="rhel fedora"
[2025-11-20 13:12:02] VERSION_ID="7"
[2025-11-20 13:12:02] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 13:12:02] ANSI_COLOR="0;31"
[2025-11-20 13:12:02] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 13:12:02] HOME_URL="https://www.centos.org/"
[2025-11-20 13:12:02] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 13:12:02] 
[2025-11-20 13:12:02] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 13:12:02] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 13:12:02] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 13:12:02] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 13:12:02] 
[2025-11-20 13:12:02] 2025-11-20 18:11:22,789 | INFO     | ***************************************
[2025-11-20 13:12:02] 2025-11-20 18:11:23,293 | INFO     | executing command: df -mP /tmp/boinchome/slots/5
[2025-11-20 13:12:02] 2025-11-20 18:11:23,485 | INFO     | sufficient remaining disk space (70046973952 B)
[2025-11-20 13:12:02] 2025-11-20 18:11:23,485 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 13:12:02] 2025-11-20 18:11:23,485 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 13:12:02] 2025-11-20 18:11:23,485 | INFO     | update_server=False
[2025-11-20 13:12:02] 2025-11-20 18:11:23,485 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 13:12:02] 2025-11-20 18:11:23,485 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 13:12:02] 2025-11-20 18:11:23,538 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:12:02] 2025-11-20 18:11:23,538 | INFO     | aborting loop
[2025-11-20 13:12:02] 2025-11-20 18:11:23,584 | INFO     | all job control threads have been joined
[2025-11-20 13:12:02] 2025-11-20 18:11:23,766 | INFO     | all payload control threads have been joined
[2025-11-20 13:12:02] 2025-11-20 18:11:24,012 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:12:02] 2025-11-20 18:11:24,128 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 13:12:02] 2025-11-20 18:11:24,386 | INFO     | all data control threads have been joined
[2025-11-20 13:12:02] 2025-11-20 18:11:24,510 | INFO     | [job] retrieve thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:24,544 | INFO     | [job] job monitor thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:24,591 | INFO     | [job] control thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:24,676 | INFO     | [job] validate thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:24,680 | INFO     | [data] copytool_in thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:24,776 | INFO     | [payload] control thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:24,779 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:25,020 | INFO     | [job] queue monitor thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:25,084 | INFO     | [payload] validate_post thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:25,109 | INFO     | [payload] failed_post thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:25,196 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:25,196 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:25,374 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:25,400 | INFO     | [data] control thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:26,136 | INFO     | [data] copytool_out thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:27,495 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 13:12:02] 2025-11-20 18:11:32,057 | INFO     | [monitor] cgroup control has ended
[2025-11-20 13:12:02] 2025-11-20 18:11:34,046 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140572670814016)>', '<ExcThread(monitor, started 140572174042880)>']
[2025-11-20 13:12:02] 2025-11-20 18:11:39,079 | INFO     | all workflow threads have been joined
[2025-11-20 13:12:02] 2025-11-20 18:11:39,079 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 13:12:02] 2025-11-20 18:11:39,103 | INFO     | traces error code: 0
[2025-11-20 13:12:02] 2025-11-20 18:11:39,103 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 13:12:02] 2025-11-20 18:11:59,676 | INFO     | PID=811433 has CPU usage=3.0% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i PR
[2025-11-20 13:12:02] 2025-11-20 18:11:59,677 | INFO     | .. there are 24 such processes running
[2025-11-20 13:12:02] 2025-11-20 18:11:59,677 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 13:12:02] 2025-11-20 18:11:59,678 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 13:12:02] 2025-11-20 18:11:59,678 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 13:12:02] 2025-11-20 18:11:59,678 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 13:12:02] 2025-11-20 18:11:59,678 | INFO     | [monitor] control thread has ended
[2025-11-20 13:12:02] 2025-11-20 18:12:00,108 [wrapper] ==== pilot stdout END ====
[2025-11-20 13:12:02] 2025-11-20 18:12:00,122 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 13:12:02] 2025-11-20 18:12:00,141 [wrapper] pilotpid: 811433
[2025-11-20 13:12:02] 2025-11-20 18:12:00,157 [wrapper] Pilot exit status: 0
[2025-11-20 13:12:02] 2025-11-20 18:12:00,262 [wrapper] pandaids: 6891564479
[2025-11-20 13:12:02] 2025-11-20 18:12:01,244 [wrapper] cleanup supervisor_pilot 3321855 811434
[2025-11-20 13:12:02] 2025-11-20 18:12:01,257 [wrapper] Test setup, not cleaning
[2025-11-20 13:12:02] 2025-11-20 18:12:01,304 [wrapper] apfmon messages muted
[2025-11-20 13:12:02] 2025-11-20 18:12:01,321 [wrapper] ==== wrapper stdout END ====
[2025-11-20 13:12:02] 2025-11-20 18:12:01,336 [wrapper] ==== wrapper stderr END ====
[2025-11-20 13:12:02]  *** Error codes and diagnostics ***
[2025-11-20 13:12:02]     "exeErrorCode": 0,
[2025-11-20 13:12:02]     "exeErrorDiag": "",
[2025-11-20 13:12:02]     "pilotErrorCode": 0,
[2025-11-20 13:12:02]     "pilotErrorDiag": "",
[2025-11-20 13:12:02]  *** Listing of results directory ***
[2025-11-20 13:12:02] total 1352084
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas    576529 Nov 18 10:15 pilot3.tar.gz
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas      5112 Nov 18 10:27 queuedata.json
[2025-11-20 13:12:02] -rwx------. 1 boincer umatlas     36292 Nov 18 10:27 runpilot2-wrapper.sh
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas       100 Nov 19 00:01 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 13:12:02] -rwxr-xr-x. 1 boincer umatlas      7986 Nov 19 00:01 run_atlas
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas       105 Nov 19 00:01 job.xml
[2025-11-20 13:12:02] -rw-r--r--. 2 boincer umatlas 412623311 Nov 19 00:02 EVNT.47493065._000123.pool.root.1
[2025-11-20 13:12:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:02 start_atlas.sh
[2025-11-20 13:12:02] drwxrwx--x. 2 boincer umatlas      4096 Nov 19 00:02 shared
[2025-11-20 13:12:02] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 00:02 input.tar.gz
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas         0 Nov 19 00:02 boinc_lockfile
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas      2770 Nov 19 00:02 pandaJob.out
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas    992806 Nov 19 00:03 agis_schedconf.cvmfs.json
[2025-11-20 13:12:02] drwx------. 5 boincer umatlas      4096 Nov 19 00:03 pilot3
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas       533 Nov 20 12:42 boinc_task_state.xml
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas      6842 Nov 20 13:03 init_data.xml
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas 928762989 Nov 20 13:08 HITS.47493068._001221.pool.root.1
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas      1071 Nov 20 13:10 memory_monitor_summary.json
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas   1526164 Nov 20 13:10 agis_ddmendpoints.agis.ALL.json
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas   3090954 Nov 20 13:10 log.47493068._001221.job.log.tgz.1
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas      8655 Nov 20 13:11 heartbeat.json
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas      8192 Nov 20 13:11 boinc_mmap_file
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas        95 Nov 20 13:11 pilot_heartbeat.json
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas       822 Nov 20 13:11 pilotlog.txt
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas        29 Nov 20 13:12 wrapper_checkpoint.txt
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas  16522783 Nov 20 13:12 log.47493068._001221.job.log.1
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas       353 Nov 20 13:12 output.list
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas       620 Nov 20 13:12 runtime_log
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas  19630080 Nov 20 13:12 result.tar.gz
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas       669 Nov 20 13:12 uvUNDmYncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmoDFKDmI0QkSn.diag
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas      8710 Nov 20 13:12 runtime_log.err
[2025-11-20 13:12:02] -rw-r--r--. 1 boincer umatlas     21771 Nov 20 13:12 stderr.txt
[2025-11-20 13:12:02] HITS file was successfully produced:
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas 928762989 Nov 20 13:08 shared/HITS.pool.root.1
[2025-11-20 13:12:02]  *** Contents of shared directory: ***
[2025-11-20 13:12:02] total 1329728
[2025-11-20 13:12:02] -rw-r--r--. 2 boincer umatlas 412623311 Nov 19 00:02 ATLAS.root_0
[2025-11-20 13:12:02] -rw-r--r--. 2 boincer umatlas     15120 Nov 19 00:02 start_atlas.sh
[2025-11-20 13:12:02] -rw-r--r--. 2 boincer umatlas    590099 Nov 19 00:02 input.tar.gz
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas 928762989 Nov 20 13:08 HITS.pool.root.1
[2025-11-20 13:12:02] -rw-------. 1 boincer umatlas  19630080 Nov 20 13:12 result.tar.gz
13:12:04 (801975): run_atlas exited; CPU time 255321.312327
13:12:04 (801975): called boinc_finish(0)

</stderr_txt>
]]>

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