Stderr output

<core_client_version>7.20.2</core_client_version>
<![CDATA[
<stderr_txt>
09:37:29 (1963675): wrapper (7.7.26015): starting
09:37:29 (1963675): wrapper: running run_atlas (--nthreads 12)
[2025-11-20 09:37:29] Arguments: --nthreads 12
[2025-11-20 09:37:29] Threads: 12
[2025-11-20 09:37:29] Checking for CVMFS
[2025-11-20 09:37:29] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-20 09:37:29] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-20 09:37:29] Running cvmfs_config stat atlas.cern.ch
[2025-11-20 09:37:29] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-20 09:37:29] 2.13.3.0 10248 18337 77136 153069 3 90 35102122 46080001 1043 130560 1 2674026 99.791 844897 3418 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://[2001:718:401:6025:1:0:2:0]:3128 1
[2025-11-20 09:37:29] CVMFS is ok
[2025-11-20 09:37:29] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-20 09:37:29] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-20 09:37:29] Further information can be found at the LHC@home message board.
[2025-11-20 09:37:29] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-20 09:37:29] Checking for apptainer binary...
[2025-11-20 09:37:29] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-20 09:37:29] Running /usr/bin/apptainer --version
[2025-11-20 09:37:29] apptainer version 1.4.3-1.el9
[2025-11-20 09:37:29] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-20 09:37:29] gpu01.farm.particle.cz
[2025-11-20 09:37:29] apptainer works
[2025-11-20 09:37:29] Set ATHENA_PROC_NUMBER=12
[2025-11-20 09:37:29] Set ATHENA_CORE_NUMBER=12
[2025-11-20 09:37:29] Starting ATLAS job with PandaID=6891565327
[2025-11-20 09:37:29] Running command: /usr/bin/apptainer exec -B /cvmfs,/var/lib/boinc/slots/1 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-20 13:29:01]  *** The last 200 lines of the pilot log: ***
[2025-11-20 13:29:01] 2025-11-20 12:28:20,555 | INFO     | extracted standard info from prmon json
[2025-11-20 13:29:01] 2025-11-20 12:28:20,555 | INFO     | extracted standard memory fields from prmon json
[2025-11-20 13:29:01] 2025-11-20 12:28:20,556 | WARNING  | GPU info not found in prmon json: 'gpu'
[2025-11-20 13:29:01] 2025-11-20 12:28:20,559 | INFO     | fitting pss+swap vs Time
[2025-11-20 13:29:01] 2025-11-20 12:28:20,559 | INFO     | sum of square deviations: 3626892872.255505
[2025-11-20 13:29:01] 2025-11-20 12:28:20,561 | INFO     | sum of deviations: 100404968746.0176
[2025-11-20 13:29:01] 2025-11-20 12:28:20,561 | INFO     | mean x: 1763634770.9427314
[2025-11-20 13:29:01] 2025-11-20 12:28:20,561 | INFO     | mean y: 3507388.616740088
[2025-11-20 13:29:01] 2025-11-20 12:28:20,561 | INFO     | intersect: -48820017400.46068
[2025-11-20 13:29:01] 2025-11-20 12:28:20,561 | INFO     | chi2: 3.32043821614382
[2025-11-20 13:29:01] 2025-11-20 12:28:20,562 | INFO     | sum of square deviations: 3392525835.211715
[2025-11-20 13:29:01] 2025-11-20 12:28:20,563 | INFO     | sum of deviations: 159775465144.18918
[2025-11-20 13:29:01] 2025-11-20 12:28:20,563 | INFO     | mean x: 1763634618.463964
[2025-11-20 13:29:01] 2025-11-20 12:28:20,563 | INFO     | mean y: 3545780.6486486485
[2025-11-20 13:29:01] 2025-11-20 12:28:20,563 | INFO     | intersect: -83057145632.44688
[2025-11-20 13:29:01] 2025-11-20 12:28:20,563 | INFO     | chi2: 1.6557568348861993
[2025-11-20 13:29:01] 2025-11-20 12:28:20,563 | INFO     | current chi2=1.6557568348861993 (change=50.13438808058572 %)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,564 | INFO     | sum of square deviations: 3168416867.7050776
[2025-11-20 13:29:01] 2025-11-20 12:28:20,565 | INFO     | sum of deviations: 154398137703.87106
[2025-11-20 13:29:01] 2025-11-20 12:28:20,565 | INFO     | mean x: 1763634465.9631336
[2025-11-20 13:29:01] 2025-11-20 12:28:20,565 | INFO     | mean y: 3542106.4838709678
[2025-11-20 13:29:01] 2025-11-20 12:28:20,565 | INFO     | intersect: -85939024324.90257
[2025-11-20 13:29:01] 2025-11-20 12:28:20,565 | INFO     | chi2: 1.6500931018823968
[2025-11-20 13:29:01] 2025-11-20 12:28:20,565 | INFO     | current chi2=1.6500931018823968 (change=0.34206309069482344 %)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,565 | INFO     | right removable region: 216
[2025-11-20 13:29:01] 2025-11-20 12:28:20,566 | INFO     | sum of square deviations: 3392436472.954968
[2025-11-20 13:29:01] 2025-11-20 12:28:20,567 | INFO     | sum of deviations: 43487995957.936966
[2025-11-20 13:29:01] 2025-11-20 12:28:20,567 | INFO     | mean x: 1763634923.4504504
[2025-11-20 13:29:01] 2025-11-20 12:28:20,567 | INFO     | mean y: 3544114.1306306305
[2025-11-20 13:29:01] 2025-11-20 12:28:20,567 | INFO     | intersect: -22604675386.434727
[2025-11-20 13:29:01] 2025-11-20 12:28:20,567 | INFO     | chi2: 1.739188021068924
[2025-11-20 13:29:01] 2025-11-20 12:28:20,568 | INFO     | current chi2=1.739188021068924 (change=47.62173219748313 %)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,568 | INFO     | sum of square deviations: 3168333300.442411
[2025-11-20 13:29:01] 2025-11-20 12:28:20,569 | INFO     | sum of deviations: 30173394342.811024
[2025-11-20 13:29:01] 2025-11-20 12:28:20,569 | INFO     | mean x: 1763635075.9493089
[2025-11-20 13:29:01] 2025-11-20 12:28:20,569 | INFO     | mean y: 3553158.073732719
[2025-11-20 13:29:01] 2025-11-20 12:28:20,569 | INFO     | intersect: -16792298659.66315
[2025-11-20 13:29:01] 2025-11-20 12:28:20,569 | INFO     | chi2: 1.7074419814705262
[2025-11-20 13:29:01] 2025-11-20 12:28:20,570 | INFO     | current chi2=1.7074419814705262 (change=1.82533683614531 %)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,570 | INFO     | left removable region: 20
[2025-11-20 13:29:01] 2025-11-20 12:28:20,570 | INFO     | sum of square deviations: 2334659166.8163424
[2025-11-20 13:29:01] 2025-11-20 12:28:20,571 | INFO     | sum of deviations: 65383325032.34687
[2025-11-20 13:29:01] 2025-11-20 12:28:20,571 | INFO     | mean x: 1763635045.4693878
[2025-11-20 13:29:01] 2025-11-20 12:28:20,571 | INFO     | mean y: 3606156.224489796
[2025-11-20 13:29:01] 2025-11-20 12:28:20,571 | INFO     | intersect: -49387896061.8952
[2025-11-20 13:29:01] 2025-11-20 12:28:20,571 | INFO     | chi2: 0.006475446198047236
[2025-11-20 13:29:01] 2025-11-20 12:28:20,571 | INFO     | current memory leak: 28.01 B/s (using 196 data points, chi2=0.01)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | could have reported an average CPU frequency of 3209 MHz (11 samples)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | ..............................
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | . Timing measurements:
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | . get job = 0 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | . initial setup = 1 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | . payload setup = 3 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | . stage-in = 0 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | . payload execution = 13817 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,572 | INFO     | . stage-out = 1 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,573 | INFO     | . log creation = 0 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,573 | INFO     | ..............................
[2025-11-20 13:29:01] 2025-11-20 12:28:20,646 | INFO     | 
[2025-11-20 13:29:01] 2025-11-20 12:28:20,646 | INFO     | job summary report
[2025-11-20 13:29:01] 2025-11-20 12:28:20,646 | INFO     | --------------------------------------------------
[2025-11-20 13:29:01] 2025-11-20 12:28:20,646 | INFO     | PanDA job id: 6891565327
[2025-11-20 13:29:01] 2025-11-20 12:28:20,646 | INFO     | task id: 47493068
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | errors: (none)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | status: LOG_TRANSFER = DONE 
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | pilot state: finished 
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | transexitcode: 0
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | exeerrorcode: 0
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | exeerrordiag: 
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | exitcode: 0
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | exitmsg: OK
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | cpuconsumptiontime: 161406 s
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | nevents: 1000
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | neventsw: 0
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | pid: 1975229
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | pgrp: 1975229
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | corecount: 12
[2025-11-20 13:29:01] 2025-11-20 12:28:20,647 | INFO     | event service: False
[2025-11-20 13:29:01] 2025-11-20 12:28:20,648 | INFO     | sizes: {0: 2297194, 3: 2297456, 11: 2297484, 13825: 2328868, 13827: 2337918, 13830: 2338108}
[2025-11-20 13:29:01] 2025-11-20 12:28:20,648 | INFO     | --------------------------------------------------
[2025-11-20 13:29:01] 2025-11-20 12:28:20,648 | INFO     | 
[2025-11-20 13:29:01] 2025-11-20 12:28:20,648 | INFO     | executing command: ls -lF /var/lib/boinc/slots/1
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue jobs had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue payloads had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue data_in had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue data_out had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue current_data_in had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue validated_jobs had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue validated_payloads had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,664 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-20 13:29:01] 2025-11-20 12:28:20,665 | INFO     | job 6891565327 has completed (purged errors)
[2025-11-20 13:29:01] 2025-11-20 12:28:20,666 | INFO     | overall cleanup function is called
[2025-11-20 13:29:01] 2025-11-20 12:28:21,045 | WARNING  | process 1975229 can no longer be monitored (due to stat problems) - aborting
[2025-11-20 13:29:01] 2025-11-20 12:28:21,112 | INFO     | using path: /var/lib/boinc/slots/1/memory_monitor_summary.json (trf name=prmon)
[2025-11-20 13:29:01] 2025-11-20 12:28:21,197 | INFO     | number of running child processes to parent process 1975229: 1
[2025-11-20 13:29:01] 2025-11-20 12:28:21,197 | INFO     | maximum number of monitored processes: 17
[2025-11-20 13:29:01] 2025-11-20 12:28:21,197 | INFO     | aborting job monitoring since job object (job id=6891565327) has expired
[2025-11-20 13:29:01] 2025-11-20 12:28:21,684 | INFO     | --- collectZombieJob: --- 10, [1975229]
[2025-11-20 13:29:01] 2025-11-20 12:28:21,684 | INFO     | zombie collector waiting for pid 1975229
[2025-11-20 13:29:01] 2025-11-20 12:28:21,684 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-20 13:29:01] 2025-11-20 12:28:21,684 | INFO     | collected zombie processes
[2025-11-20 13:29:01] 2025-11-20 12:28:21,684 | INFO     | will attempt to kill all subprocesses of pid=1975229
[2025-11-20 13:29:01] 2025-11-20 12:28:21,770 | INFO     | process IDs to be killed: [1975229] (in reverse order)
[2025-11-20 13:29:01] 2025-11-20 12:28:21,809 | WARNING  | found no corresponding commands to process id(s)
[2025-11-20 13:29:01] 2025-11-20 12:28:21,809 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-20 13:29:01] 2025-11-20 12:28:21,813 | INFO     | did not find any defunct processes belonging to 1975229
[2025-11-20 13:29:01] 2025-11-20 12:28:21,816 | INFO     | did not find any defunct processes belonging to 1975229
[2025-11-20 13:29:01] 2025-11-20 12:28:21,816 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-20 13:29:01] 2025-11-20 12:28:21,816 | INFO     | ready for new job
[2025-11-20 13:29:01] 2025-11-20 12:28:21,816 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-20 13:29:01] 2025-11-20 12:28:21,818 | INFO     | ***************************************
[2025-11-20 13:29:01] 2025-11-20 12:28:21,818 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-20 13:29:01] 2025-11-20 12:28:21,818 | INFO     | ***************************************
[2025-11-20 13:29:01] 2025-11-20 12:28:21,818 | INFO     | 
[2025-11-20 13:29:01] 2025-11-20 12:28:21,819 | INFO     | architecture information:
[2025-11-20 13:29:01] 2025-11-20 12:28:21,819 | INFO     | executing command: cat /etc/os-release
[2025-11-20 13:29:01] 2025-11-20 12:28:21,831 | INFO     | cat /etc/os-release:
[2025-11-20 13:29:01] NAME="CentOS Linux"
[2025-11-20 13:29:01] VERSION="7 (Core)"
[2025-11-20 13:29:01] ID="centos"
[2025-11-20 13:29:01] ID_LIKE="rhel fedora"
[2025-11-20 13:29:01] VERSION_ID="7"
[2025-11-20 13:29:01] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-20 13:29:01] ANSI_COLOR="0;31"
[2025-11-20 13:29:01] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-20 13:29:01] HOME_URL="https://www.centos.org/"
[2025-11-20 13:29:01] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-20 13:29:01] 
[2025-11-20 13:29:01] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-20 13:29:01] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-20 13:29:01] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-20 13:29:01] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-20 13:29:01] 
[2025-11-20 13:29:01] 2025-11-20 12:28:21,831 | INFO     | ***************************************
[2025-11-20 13:29:01] 2025-11-20 12:28:22,334 | INFO     | executing command: df -mP /var/lib/boinc/slots/1
[2025-11-20 13:29:01] 2025-11-20 12:28:22,347 | INFO     | sufficient remaining disk space (52063895552 B)
[2025-11-20 13:29:01] 2025-11-20 12:28:22,347 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-20 13:29:01] 2025-11-20 12:28:22,347 | INFO     | current server update state: UPDATING_FINAL
[2025-11-20 13:29:01] 2025-11-20 12:28:22,347 | INFO     | update_server=False
[2025-11-20 13:29:01] 2025-11-20 12:28:22,347 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-20 13:29:01] 2025-11-20 12:28:22,348 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:29:01] 2025-11-20 12:28:22,348 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-20 13:29:01] 2025-11-20 12:28:22,348 | INFO     | aborting loop
[2025-11-20 13:29:01] 2025-11-20 12:28:22,673 | INFO     | all job control threads have been joined
[2025-11-20 13:29:01] 2025-11-20 12:28:23,056 | INFO     | all payload control threads have been joined
[2025-11-20 13:29:01] 2025-11-20 12:28:23,120 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-20 13:29:01] 2025-11-20 12:28:23,290 | INFO     | all data control threads have been joined
[2025-11-20 13:29:01] 2025-11-20 12:28:23,353 | INFO     | [job] retrieve thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:23,353 | INFO     | [job] queue monitor thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:23,354 | INFO     | [job] job monitor thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:23,440 | INFO     | [payload] execute_payloads thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:23,522 | INFO     | [payload] failed_post thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:23,661 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-20 13:29:01] 2025-11-20 12:28:23,678 | INFO     | [job] control thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:23,976 | INFO     | [payload] validate_post thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:24,061 | INFO     | [payload] control thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:24,239 | INFO     | [job] validate thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:24,282 | INFO     | [data] copytool_in thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:24,296 | INFO     | [data] control thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:24,567 | INFO     | [job] create_data_payload thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:24,657 | INFO     | [payload] validate_pre thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:25,125 | INFO     | [data] copytool_out thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:27,667 | INFO     | [data] queue_monitor thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:33,316 | INFO     | job.realtimelogging is not enabled
[2025-11-20 13:29:01] 2025-11-20 12:28:34,321 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-20 13:29:01] 2025-11-20 12:28:53,285 | INFO     | PID=1967537 has CPU usage=4.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-20 13:29:01] 2025-11-20 12:28:53,285 | INFO     | .. there are 2 such processes running
[2025-11-20 13:29:01] 2025-11-20 12:28:53,286 | INFO     | found 0 job(s) in 20 queues
[2025-11-20 13:29:01] 2025-11-20 12:28:53,286 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-20 13:29:01] 2025-11-20 12:28:53,286 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-20 13:29:01] 2025-11-20 12:28:55,741 | INFO     | [monitor] cgroup control has ended
[2025-11-20 13:29:01] 2025-11-20 12:28:56,103 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140314438129472)>', '<ExcThread(monitor, started 140313939134208)>']
[2025-11-20 13:29:01] 2025-11-20 12:28:56,301 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-20 13:29:01] 2025-11-20 12:28:56,301 | INFO     | [monitor] control thread has ended
[2025-11-20 13:29:01] 2025-11-20 12:29:01,120 | INFO     | all workflow threads have been joined
[2025-11-20 13:29:01] 2025-11-20 12:29:01,120 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-20 13:29:01] 2025-11-20 12:29:01,120 | INFO     | traces error code: 0
[2025-11-20 13:29:01] 2025-11-20 12:29:01,120 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-20 13:29:01] 2025-11-20 12:29:01,211 [wrapper] ==== pilot stdout END ====
[2025-11-20 13:29:01] 2025-11-20 12:29:01,213 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-20 13:29:01] 2025-11-20 12:29:01,215 [wrapper] pilotpid: 1967537
[2025-11-20 13:29:01] 2025-11-20 12:29:01,217 [wrapper] Pilot exit status: 0
[2025-11-20 13:29:01] 2025-11-20 12:29:01,224 [wrapper] pandaids: 6891565327
[2025-11-20 13:29:01] 2025-11-20 12:29:01,249 [wrapper] cleanup supervisor_pilot 2152635 1967538
[2025-11-20 13:29:01] 2025-11-20 12:29:01,251 [wrapper] Test setup, not cleaning
[2025-11-20 13:29:01] 2025-11-20 12:29:01,253 [wrapper] apfmon messages muted
[2025-11-20 13:29:01] 2025-11-20 12:29:01,255 [wrapper] ==== wrapper stdout END ====
[2025-11-20 13:29:01] 2025-11-20 12:29:01,256 [wrapper] ==== wrapper stderr END ====
[2025-11-20 13:29:01]  *** Error codes and diagnostics ***
[2025-11-20 13:29:01]     "exeErrorCode": 0,
[2025-11-20 13:29:01]     "exeErrorDiag": "",
[2025-11-20 13:29:01]     "pilotErrorCode": 0,
[2025-11-20 13:29:01]     "pilotErrorDiag": "",
[2025-11-20 13:29:01]  *** Listing of results directory ***
[2025-11-20 13:29:01] total 1314464
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc    576529 Nov 18 16:15 pilot3.tar.gz
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc      5112 Nov 18 16:27 queuedata.json
[2025-11-20 13:29:01] -rwx------ 1 boinc boinc     36292 Nov 18 16:27 runpilot2-wrapper.sh
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc       100 Nov 20 09:37 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-20 13:29:01] -rwxr-xr-x 1 boinc boinc      7986 Nov 20 09:37 run_atlas
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc       105 Nov 20 09:37 job.xml
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc      9445 Nov 20 09:37 init_data.xml
[2025-11-20 13:29:01] -rw-r--r-- 2 boinc boinc 409573603 Nov 20 09:37 EVNT.47493065._000144.pool.root.1
[2025-11-20 13:29:01] -rw-r--r-- 2 boinc boinc     15120 Nov 20 09:37 start_atlas.sh
[2025-11-20 13:29:01] drwxrwx--x 2 boinc boinc      4096 Nov 20 09:37 shared
[2025-11-20 13:29:01] -rw-r--r-- 2 boinc boinc    590103 Nov 20 09:37 input.tar.gz
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc         0 Nov 20 09:37 boinc_lockfile
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc      2770 Nov 20 09:37 pandaJob.out
[2025-11-20 13:29:01] -rw------- 1 boinc boinc    989427 Nov 20 09:37 agis_schedconf.cvmfs.json
[2025-11-20 13:29:01] drwx------ 5 boinc boinc      4096 Nov 20 09:37 pilot3
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc       532 Nov 20 13:22 boinc_task_state.xml
[2025-11-20 13:29:01] -rw------- 1 boinc boinc 924562386 Nov 20 13:27 HITS.47493068._001431.pool.root.1
[2025-11-20 13:29:01] -rw------- 1 boinc boinc        95 Nov 20 13:27 pilot_heartbeat.json
[2025-11-20 13:29:01] -rw------- 1 boinc boinc      1036 Nov 20 13:28 memory_monitor_summary.json
[2025-11-20 13:29:01] -rw------- 1 boinc boinc   1525063 Nov 20 13:28 agis_ddmendpoints.agis.ALL.json
[2025-11-20 13:29:01] -rw------- 1 boinc boinc   1963111 Nov 20 13:28 log.47493068._001431.job.log.tgz.1
[2025-11-20 13:29:01] -rw------- 1 boinc boinc      8601 Nov 20 13:28 heartbeat.json
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc      8192 Nov 20 13:28 boinc_mmap_file
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc        29 Nov 20 13:28 wrapper_checkpoint.txt
[2025-11-20 13:29:01] -rw------- 1 boinc boinc      4895 Nov 20 13:29 pilotlog.txt
[2025-11-20 13:29:01] -rw------- 1 boinc boinc   2010056 Nov 20 13:29 log.47493068._001431.job.log.1
[2025-11-20 13:29:01] -rw------- 1 boinc boinc       353 Nov 20 13:29 output.list
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc       620 Nov 20 13:29 runtime_log
[2025-11-20 13:29:01] -rw------- 1 boinc boinc   3993600 Nov 20 13:29 result.tar.gz
[2025-11-20 13:29:01] -rw------- 1 boinc boinc       667 Nov 20 13:29 x0jNDmYncf8n9Rq4apOajLDm4fhM0noT9bVo0NGKDmwDFKDm85ItJm.diag
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc      8741 Nov 20 13:29 runtime_log.err
[2025-11-20 13:29:01] -rw-r--r-- 1 boinc boinc     21270 Nov 20 13:29 stderr.txt
[2025-11-20 13:29:01] HITS file was successfully produced:
[2025-11-20 13:29:01] -rw------- 1 boinc boinc 924562386 Nov 20 13:27 shared/HITS.pool.root.1
[2025-11-20 13:29:01]  *** Contents of shared directory: ***
[2025-11-20 13:29:01] total 1307376
[2025-11-20 13:29:01] -rw-r--r-- 2 boinc boinc 409573603 Nov 20 09:37 ATLAS.root_0
[2025-11-20 13:29:01] -rw-r--r-- 2 boinc boinc     15120 Nov 20 09:37 start_atlas.sh
[2025-11-20 13:29:01] -rw-r--r-- 2 boinc boinc    590103 Nov 20 09:37 input.tar.gz
[2025-11-20 13:29:01] -rw------- 1 boinc boinc 924562386 Nov 20 13:27 HITS.pool.root.1
[2025-11-20 13:29:01] -rw------- 1 boinc boinc   3993600 Nov 20 13:29 result.tar.gz
13:29:03 (1963675): run_atlas exited; CPU time 161224.545324
13:29:03 (1963675): called boinc_finish(0)

</stderr_txt>
]]>

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