Stderr output

<core_client_version>8.2.2</core_client_version>
<![CDATA[
<stderr_txt>
04:36:02 (2806178): wrapper (7.7.26015): starting
04:36:02 (2806178): wrapper: running run_atlas (--nthreads 2)
[2025-11-21 04:36:02] Arguments: --nthreads 2
[2025-11-21 04:36:02] Threads: 2
[2025-11-21 04:36:02] Checking for CVMFS
[2025-11-21 04:36:02] Probing /cvmfs/atlas.cern.ch... OK
[2025-11-21 04:36:02] Probing /cvmfs/atlas-condb.cern.ch... OK
[2025-11-21 04:36:02] Running cvmfs_config stat atlas.cern.ch
[2025-11-21 04:36:03] VERSION PID UPTIME(M) MEM(K) REVISION EXPIRES(M) NOCATALOGS CACHEUSE(K) CACHEMAX(K) NOFDUSE NOFDMAX NOIOERR NOOPEN HITRATE(%) RX(K) SPEED(K/S) HOST PROXY ONLINE
[2025-11-21 04:36:03] 2.9.2.0 2377071 3659 56856 153106 3 81 36082325 36864001 0 130560 0 1175369 99.826 298901 3052 http://cvmfs-stratum-one.cern.ch:8000/cvmfs/atlas.cern.ch http://130.183.36.13:3128 1
[2025-11-21 04:36:03] CVMFS is ok
[2025-11-21 04:36:03] Efficiency of ATLAS tasks can be improved by the following measure(s):
[2025-11-21 04:36:03] The CVMFS client on this computer should be configured to use Cloudflare's openhtc.io.
[2025-11-21 04:36:03] Further information can be found at the LHC@home message board.
[2025-11-21 04:36:03] Using apptainer image /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7
[2025-11-21 04:36:03] Checking for apptainer binary...
[2025-11-21 04:36:03] Using apptainer found in PATH at /usr/bin/apptainer
[2025-11-21 04:36:03] Running /usr/bin/apptainer --version
[2025-11-21 04:36:03] apptainer version 1.4.1-1.1
[2025-11-21 04:36:03] Checking apptainer works with /usr/bin/apptainer exec -B /cvmfs /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 hostname
[2025-11-21 04:36:03] thA334a
[2025-11-21 04:36:03] apptainer works
[2025-11-21 04:36:03] Set ATHENA_PROC_NUMBER=2
[2025-11-21 04:36:03] Set ATHENA_CORE_NUMBER=2
[2025-11-21 04:36:03] Starting ATLAS job with PandaID=6891596339
[2025-11-21 04:36:03] Running command: /usr/bin/apptainer exec -B /cvmfs,/local/data/boinc/slots/0 /cvmfs/atlas.cern.ch/repo/containers/fs/singularity/x86_64-centos7 sh start_atlas.sh
[2025-11-21 16:37:22]  *** The last 200 lines of the pilot log: ***
[2025-11-21 16:37:22] 2025-11-21 15:36:31,595 | INFO     | queue monitored_payloads had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,596 | INFO     | queue finished_jobs had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,596 | INFO     | queue finished_payloads had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,596 | INFO     | queue finished_data_in had 1 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,596 | INFO     | queue finished_data_out had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,596 | INFO     | queue failed_jobs had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,596 | INFO     | queue failed_payloads had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,596 | INFO     | queue failed_data_in had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,597 | INFO     | queue failed_data_out had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,597 | INFO     | queue completed_jobs had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,597 | INFO     | queue completed_jobids has 1 job(s)
[2025-11-21 16:37:22] 2025-11-21 15:36:31,597 | INFO     | queue realtimelog_payloads had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,597 | INFO     | queue messages had 0 job(s) [purged]
[2025-11-21 16:37:22] 2025-11-21 15:36:31,597 | INFO     | job 6891596339 has completed (purged errors)
[2025-11-21 16:37:22] 2025-11-21 15:36:31,598 | INFO     | overall cleanup function is called
[2025-11-21 16:37:22] 2025-11-21 15:36:32,605 | INFO     | --- collectZombieJob: --- 10, [2816313]
[2025-11-21 16:37:22] 2025-11-21 15:36:32,606 | INFO     | zombie collector waiting for pid 2816313
[2025-11-21 16:37:22] 2025-11-21 15:36:32,606 | INFO     | harmless exception when collecting zombies: [Errno 10] No child processes
[2025-11-21 16:37:22] 2025-11-21 15:36:32,606 | INFO     | collected zombie processes
[2025-11-21 16:37:22] 2025-11-21 15:36:32,606 | INFO     | will attempt to kill all subprocesses of pid=2816313
[2025-11-21 16:37:22] 2025-11-21 15:36:32,641 | INFO     | process IDs to be killed: [2816313] (in reverse order)
[2025-11-21 16:37:22] 2025-11-21 15:36:32,661 | WARNING  | found no corresponding commands to process id(s)
[2025-11-21 16:37:22] 2025-11-21 15:36:32,661 | INFO     | Do not look for orphan processes in BOINC jobs
[2025-11-21 16:37:22] 2025-11-21 15:36:32,662 | INFO     | did not find any defunct processes belonging to 2816313
[2025-11-21 16:37:22] 2025-11-21 15:36:32,663 | INFO     | did not find any defunct processes belonging to 2816313
[2025-11-21 16:37:22] 2025-11-21 15:36:32,664 | WARNING  | condor_chirp not found. condor_config_val not found. | If you're on a worker node/container, HTCondor may not expose configs to your env. Try: export CONDOR_CONFIG
[2025-11-21 16:37:22] 2025-11-21 15:36:32,664 | INFO     | ready for new job
[2025-11-21 16:37:22] 2025-11-21 15:36:32,664 | INFO     | pilot has finished with previous job - re-establishing logging
[2025-11-21 16:37:22] 2025-11-21 15:36:32,665 | INFO     | ***************************************
[2025-11-21 16:37:22] 2025-11-21 15:36:32,665 | INFO     | ***  PanDA Pilot version 3.11.1.15  ***
[2025-11-21 16:37:22] 2025-11-21 15:36:32,665 | INFO     | ***************************************
[2025-11-21 16:37:22] 2025-11-21 15:36:32,665 | INFO     | 
[2025-11-21 16:37:22] 2025-11-21 15:36:32,665 | INFO     | architecture information:
[2025-11-21 16:37:22] 2025-11-21 15:36:32,665 | INFO     | executing command: cat /etc/os-release
[2025-11-21 16:37:22] 2025-11-21 15:36:32,674 | INFO     | cat /etc/os-release:
[2025-11-21 16:37:22] NAME="CentOS Linux"
[2025-11-21 16:37:22] VERSION="7 (Core)"
[2025-11-21 16:37:22] ID="centos"
[2025-11-21 16:37:22] ID_LIKE="rhel fedora"
[2025-11-21 16:37:22] VERSION_ID="7"
[2025-11-21 16:37:22] PRETTY_NAME="CentOS Linux 7 (Core)"
[2025-11-21 16:37:22] ANSI_COLOR="0;31"
[2025-11-21 16:37:22] CPE_NAME="cpe:/o:centos:centos:7"
[2025-11-21 16:37:22] HOME_URL="https://www.centos.org/"
[2025-11-21 16:37:22] BUG_REPORT_URL="https://bugs.centos.org/"
[2025-11-21 16:37:22] 
[2025-11-21 16:37:22] CENTOS_MANTISBT_PROJECT="CentOS-7"
[2025-11-21 16:37:22] CENTOS_MANTISBT_PROJECT_VERSION="7"
[2025-11-21 16:37:22] REDHAT_SUPPORT_PRODUCT="centos"
[2025-11-21 16:37:22] REDHAT_SUPPORT_PRODUCT_VERSION="7"
[2025-11-21 16:37:22] 
[2025-11-21 16:37:22] 2025-11-21 15:36:32,674 | INFO     | ***************************************
[2025-11-21 16:37:22] 2025-11-21 15:36:33,177 | INFO     | executing command: df -mP /local/data/boinc/slots/0
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | INFO     | sufficient remaining disk space (485206523904 B)
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | WARNING  | since timefloor is set to 0, pilot was only allowed to run one job
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | INFO     | current server update state: UPDATING_FINAL
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | INFO     | update_server=False
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | WARNING  | setting graceful_stop since proceed_with_getjob() returned False (pilot will end)
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | WARNING  | job:queue_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | WARNING  | job:job_monitor:received graceful stop - abort after this iteration
[2025-11-21 16:37:22] 2025-11-21 15:36:33,189 | INFO     | aborting loop
[2025-11-21 16:37:22] 2025-11-21 15:36:33,506 | WARNING  | data:copytool_out:received graceful stop - abort after this iteration
[2025-11-21 16:37:22] 2025-11-21 15:36:33,531 | INFO     | all data control threads have been joined
[2025-11-21 16:37:22] 2025-11-21 15:36:34,195 | INFO     | [job] queue monitor thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,196 | INFO     | [job] job monitor thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,196 | INFO     | [job] retrieve thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,235 | INFO     | all payload control threads have been joined
[2025-11-21 16:37:22] 2025-11-21 15:36:34,243 | INFO     | [payload] validate_pre thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,250 | INFO     | [payload] run_realtimelog thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,279 | INFO     | [data] copytool_in thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,501 | INFO     | [job] validate thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,537 | INFO     | [data] control thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:34,834 | INFO     | all job control threads have been joined
[2025-11-21 16:37:22] 2025-11-21 15:36:34,861 | WARNING  | data:queue_monitoring:received graceful stop - abort after this iteration
[2025-11-21 16:37:22] 2025-11-21 15:36:34,887 | INFO     | [payload] execute_payloads thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:35,077 | INFO     | [payload] failed_post thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:35,203 | INFO     | [job] create_data_payload thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:35,241 | INFO     | [payload] control thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:35,513 | INFO     | [data] copytool_out thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:35,723 | INFO     | [payload] validate_post thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:35,840 | INFO     | [job] control thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:36:38,869 | INFO     | [data] queue_monitor thread has finished
[2025-11-21 16:37:22] 2025-11-21 15:37:02,929 | INFO     | PID=2809888 has CPU usage=2.4% CMD=/cvmfs/atlas.cern.ch/repo/ATLASLocalRootBase/x86_64/python/3.9.20-x86_64-centos7/bin/python3 pilot3/pilot.py -q BOINC_MCORE -i P
[2025-11-21 16:37:22] 2025-11-21 15:37:02,930 | INFO     | found 0 job(s) in 20 queues
[2025-11-21 16:37:22] 2025-11-21 15:37:02,930 | WARNING  | pilot monitor received instruction that args.graceful_stop has been set
[2025-11-21 16:37:22] 2025-11-21 15:37:02,930 | WARNING  | will wait for a maximum of 300 s for threads to finish
[2025-11-21 16:37:22] 2025-11-21 15:37:15,647 | INFO     | [monitor] cgroup control has ended
[2025-11-21 16:37:22] 2025-11-21 15:37:16,253 | INFO     | only monitor.control thread still running - safe to abort: ['<_MainThread(MainThread, started 140539307206464)>', '<ExcThread(monitor, started 140538812544768)>']
[2025-11-21 16:37:22] 2025-11-21 15:37:17,005 | WARNING  | job_aborted has been set - aborting pilot monitoring
[2025-11-21 16:37:22] 2025-11-21 15:37:17,006 | INFO     | [monitor] control thread has ended
[2025-11-21 16:37:22] 2025-11-21 15:37:21,271 | INFO     | all workflow threads have been joined
[2025-11-21 16:37:22] 2025-11-21 15:37:21,273 | INFO     | end of generic workflow (traces error code: 0)
[2025-11-21 16:37:22] 2025-11-21 15:37:21,273 | INFO     | traces error code: 0
[2025-11-21 16:37:22] 2025-11-21 15:37:21,274 | INFO     | pilot has finished (exit code=0, shell exit code=0)
[2025-11-21 16:37:22] 2025-11-21 15:37:21,316 [wrapper] ==== pilot stdout END ====
[2025-11-21 16:37:22] 2025-11-21 15:37:21,318 [wrapper] ==== wrapper stdout RESUME ====
[2025-11-21 16:37:22] 2025-11-21 15:37:21,321 [wrapper] pilotpid: 2809888
[2025-11-21 16:37:22] 2025-11-21 15:37:21,323 [wrapper] Pilot exit status: 0
[2025-11-21 16:37:22] 2025-11-21 15:37:21,329 [wrapper] pandaids: 6891596339
[2025-11-21 16:37:22] 2025-11-21 15:37:21,342 [wrapper] cleanup supervisor_pilot 2888157 2809889
[2025-11-21 16:37:22] 2025-11-21 15:37:21,344 [wrapper] Test setup, not cleaning
[2025-11-21 16:37:22] 2025-11-21 15:37:21,346 [wrapper] apfmon messages muted
[2025-11-21 16:37:22] 2025-11-21 15:37:21,348 [wrapper] ==== wrapper stdout END ====
[2025-11-21 16:37:22] 2025-11-21 15:37:21,350 [wrapper] ==== wrapper stderr END ====
[2025-11-21 16:37:22]  *** Error codes and diagnostics ***
[2025-11-21 16:37:22]     "exeErrorCode": 0,
[2025-11-21 16:37:22]     "exeErrorDiag": "",
[2025-11-21 16:37:22]     "pilotErrorCode": 0,
[2025-11-21 16:37:22]     "pilotErrorDiag": "",
[2025-11-21 16:37:22]  *** Listing of results directory ***
[2025-11-21 16:37:22] total 1319872
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc    576529 Nov 18 19:36 pilot3.tar.gz
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc      5112 Nov 18 19:48 queuedata.json
[2025-11-21 16:37:22] -rwx------ 1 boinc boinc     36292 Nov 18 19:49 runpilot2-wrapper.sh
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc       100 Nov 21 04:36 wrapper_26015_x86_64-pc-linux-gnu
[2025-11-21 16:37:22] -rwxr-xr-x 1 boinc boinc      7986 Nov 21 04:36 run_atlas
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc       105 Nov 21 04:36 job.xml
[2025-11-21 16:37:22] -rw-r--r-- 2 boinc boinc 411497673 Nov 21 04:36 EVNT.47493065._000779.pool.root.1
[2025-11-21 16:37:22] -rw-r--r-- 2 boinc boinc    590096 Nov 21 04:36 input.tar.gz
[2025-11-21 16:37:22] -rw-r--r-- 2 boinc boinc     15120 Nov 21 04:36 start_atlas.sh
[2025-11-21 16:37:22] drwxrwx--x 2 boinc boinc      4096 Nov 21 04:36 shared
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc         0 Nov 21 04:36 boinc_setup_complete
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc      6206 Nov 21 04:36 init_data.xml
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc         0 Nov 21 04:36 boinc_lockfile
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc      2773 Nov 21 04:36 pandaJob.out
[2025-11-21 16:37:22] -rw------- 1 boinc boinc    989817 Nov 21 04:36 agis_schedconf.cvmfs.json
[2025-11-21 16:37:22] drwx------ 5 boinc boinc      4096 Nov 21 04:36 pilot3
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc       532 Nov 21 16:32 boinc_task_state.xml
[2025-11-21 16:37:22] -rw------- 1 boinc boinc 921602886 Nov 21 16:36 HITS.47493068._006437.pool.root.1
[2025-11-21 16:37:22] -rw------- 1 boinc boinc      1022 Nov 21 16:36 memory_monitor_summary.json
[2025-11-21 16:37:22] -rw------- 1 boinc boinc   1526164 Nov 21 16:36 agis_ddmendpoints.agis.ALL.json
[2025-11-21 16:37:22] -rw------- 1 boinc boinc   1206830 Nov 21 16:36 log.47493068._006437.job.log.tgz.1
[2025-11-21 16:37:22] -rw------- 1 boinc boinc      8563 Nov 21 16:36 heartbeat.json
[2025-11-21 16:37:22] -rw------- 1 boinc boinc        95 Nov 21 16:37 pilot_heartbeat.json
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc        28 Nov 21 16:37 wrapper_checkpoint.txt
[2025-11-21 16:37:22] -rw------- 1 boinc boinc      4752 Nov 21 16:37 pilotlog.txt
[2025-11-21 16:37:22] -rw------- 1 boinc boinc   6061137 Nov 21 16:37 log.47493068._006437.job.log.1
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc      8192 Nov 21 16:37 boinc_mmap_file
[2025-11-21 16:37:22] -rw------- 1 boinc boinc       353 Nov 21 16:37 output.list
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc       620 Nov 21 16:37 runtime_log
[2025-11-21 16:37:22] -rw------- 1 boinc boinc   7290880 Nov 21 16:37 result.tar.gz
[2025-11-21 16:37:22] -rw------- 1 boinc boinc       666 Nov 21 16:37 yfMMDm8wff8nsSi4ap6QjLDmwznN0nGgGQJmNLGKDmaKGKDmlxH8cm.diag
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc      8783 Nov 21 16:37 runtime_log.err
[2025-11-21 16:37:22] -rw-r--r-- 1 boinc boinc     12365 Nov 21 16:37 stderr.txt
[2025-11-21 16:37:22] HITS file was successfully produced:
[2025-11-21 16:37:22] -rw------- 1 boinc boinc 921602886 Nov 21 16:36 shared/HITS.pool.root.1
[2025-11-21 16:37:22]  *** Contents of shared directory: ***
[2025-11-21 16:37:22] total 1309580
[2025-11-21 16:37:22] -rw-r--r-- 2 boinc boinc 411497673 Nov 21 04:36 ATLAS.root_0
[2025-11-21 16:37:22] -rw-r--r-- 2 boinc boinc    590096 Nov 21 04:36 input.tar.gz
[2025-11-21 16:37:22] -rw-r--r-- 2 boinc boinc     15120 Nov 21 04:36 start_atlas.sh
[2025-11-21 16:37:22] -rw------- 1 boinc boinc 921602886 Nov 21 16:36 HITS.pool.root.1
[2025-11-21 16:37:22] -rw------- 1 boinc boinc   7290880 Nov 21 16:37 result.tar.gz
16:37:43 (2806178): run_atlas exited; CPU time 85631.794087
16:37:43 (2806178): called boinc_finish(0)

</stderr_txt>
]]>

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